Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47307 * 2 1 4 4 N 1.46898 * 109.47480 * 240.00372 * 2 1 3 5 5 C 1.46900 * 111.00393 * 72.13145 * 4 2 1 6 6 C 1.53041 * 109.46215 * 247.60448 * 5 4 2 7 7 C 1.53189 * 109.31516 * 178.60059 * 6 5 4 8 8 N 1.46926 * 108.76623 * 54.65011 * 7 6 5 9 9 C 1.36934 * 120.62831 * 126.40621 * 8 7 6 10 10 H 1.07997 * 120.00659 * 333.13512 * 9 8 7 11 11 C 1.38811 * 119.99763 * 153.13665 * 9 8 7 12 12 N 1.31619 * 120.00197 * 336.16138 * 11 9 8 13 13 Si 1.86803 * 120.00121 * 156.17256 * 11 9 8 14 14 H 1.48500 * 109.47094 * 359.97438 * 13 11 9 15 15 H 1.48491 * 109.47432 * 119.99706 * 13 11 9 16 16 H 1.48507 * 109.46902 * 239.99652 * 13 11 9 17 17 C 1.46924 * 118.74110 * 306.38783 * 8 7 6 18 18 C 1.53037 * 109.46062 * 127.54436 * 5 4 2 19 19 C 1.52999 * 109.47377 * 119.99958 * 2 1 3 20 20 H 1.09001 * 115.55930 * 37.27504 * 19 2 1 21 21 C 1.53069 * 117.51432 * 251.57571 * 19 2 1 22 22 C 1.52987 * 59.98641 * 252.52199 * 21 19 2 23 23 H 1.09001 * 117.50134 * 252.50202 * 22 21 19 24 24 C 1.50703 * 117.50030 * 107.50107 * 22 21 19 25 25 O 1.20826 * 119.99845 * 337.57869 * 24 22 21 26 26 O 1.34225 * 119.99888 * 157.30277 * 24 22 21 27 27 H 1.08998 * 109.47325 * 300.92857 * 1 2 3 28 28 H 1.09006 * 109.47161 * 60.92901 * 1 2 3 29 29 H 1.08998 * 109.46692 * 180.92907 * 1 2 3 30 30 H 1.00902 * 110.99508 * 308.18183 * 4 2 1 31 31 H 1.08996 * 109.45780 * 7.57363 * 5 4 2 32 32 H 1.09003 * 109.49731 * 298.56521 * 6 5 4 33 33 H 1.08997 * 109.49994 * 58.65644 * 6 5 4 34 34 H 1.09005 * 109.59850 * 294.86522 * 7 6 5 35 35 H 1.08995 * 109.70471 * 174.50382 * 7 6 5 36 36 H 0.97000 * 120.00014 * 179.97438 * 12 11 9 37 37 H 1.08998 * 109.58672 * 293.82347 * 17 8 7 38 38 H 1.08995 * 109.58773 * 173.39051 * 17 8 7 39 39 H 1.08998 * 109.49907 * 301.33933 * 18 5 4 40 40 H 1.09003 * 109.49739 * 61.43858 * 18 5 4 41 41 H 1.09001 * 117.49294 * 145.03099 * 21 19 2 42 42 H 1.09005 * 117.53417 * 359.97438 * 21 19 2 43 43 H 0.96706 * 117.00041 * 180.27373 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 1.7986 0.1197 -2.4034 6 6 0.7528 -0.5588 -3.2911 7 6 0.4991 0.3080 -4.5284 8 7 1.7822 0.5652 -5.1965 9 6 1.9455 0.2818 -6.5262 10 1 1.3518 -0.4918 -6.9905 11 6 2.8742 0.9887 -7.2776 12 7 3.2510 2.1909 -6.8965 13 14 3.5890 0.2341 -8.8297 14 1 3.0066 -1.1160 -9.0373 15 1 3.2660 1.0974 -9.9940 16 1 5.0633 0.1209 -8.6914 17 6 2.8866 1.1325 -4.4109 18 6 3.1132 0.2565 -3.1747 19 6 2.0400 -0.7212 1.2492 20 1 1.4591 -1.5891 1.5613 21 6 2.6803 0.1324 2.3467 22 6 3.5533 -0.7674 1.4699 23 1 3.9680 -1.6660 1.9268 24 6 4.4274 -0.0991 0.4402 25 8 4.1524 1.0076 0.0409 26 8 5.5145 -0.7311 -0.0293 27 1 -0.3634 0.5282 0.8815 28 1 -0.3634 0.4994 -0.8982 29 1 -0.3633 -1.0275 0.0167 30 1 1.5912 -1.6012 -1.2926 31 1 1.4427 1.1085 -2.1141 32 1 1.1187 -1.5376 -3.6013 33 1 -0.1762 -0.6773 -2.7335 34 1 0.0486 1.2535 -4.2263 35 1 -0.1706 -0.2139 -5.2118 36 1 3.9002 2.6848 -7.4214 37 1 2.6307 2.1451 -4.0992 38 1 3.7930 1.1522 -5.0160 39 1 3.8645 0.7185 -2.5342 40 1 3.4568 -0.7300 -3.4860 41 1 2.5203 -0.1743 3.3804 42 1 2.7387 1.2079 2.1789 43 1 6.0466 -0.2607 -0.6857 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593219685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = -71.313802 kcal Electronic energy + Delta-G solvation = -23565.403871 eV Core-core repulsion = 20224.644263 eV Total energy + Delta-G solvation = -3340.759608 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38691 -39.81795 -38.48389 -36.79043 -36.20272 -34.11609 -32.16643 -31.44571 -29.45889 -26.60500 -26.29621 -24.51417 -23.85111 -22.80731 -21.91810 -21.20346 -20.50254 -18.94569 -18.70524 -17.44569 -17.01772 -16.59859 -16.19837 -15.85247 -15.65235 -15.37922 -15.29869 -14.82735 -14.76481 -14.22361 -14.05441 -13.74595 -13.51095 -13.21437 -13.03913 -12.94015 -12.62596 -12.59132 -12.53164 -12.27343 -12.13826 -11.97783 -11.90074 -11.81274 -11.46330 -11.35009 -11.19966 -11.14108 -10.99431 -10.56462 -9.23236 -8.75875 -7.91828 -5.32346 1.37187 1.43824 1.46325 1.57530 2.29419 2.49993 2.77402 3.21579 3.44857 3.60390 3.66741 3.94301 3.97830 4.00961 4.15561 4.32135 4.39918 4.46234 4.51042 4.52713 4.58294 4.70599 4.76326 4.82268 4.92082 4.97788 5.01347 5.06672 5.09178 5.17337 5.23970 5.27164 5.32302 5.39723 5.45554 5.63035 5.67079 5.85752 6.19136 6.34674 6.65380 7.10392 7.22442 7.82954 8.36291 9.15548 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024038 B = 0.004621 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.533236 B = 6058.030872 C = 6777.329520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.103 3.897 3 H 0.062 0.938 4 N -0.677 5.677 5 C 0.118 3.882 6 C -0.133 4.133 7 C 0.142 3.858 8 N -0.608 5.608 9 C -0.267 4.267 10 H 0.068 0.932 11 C -0.049 4.049 12 N -0.933 5.933 13 Si 0.963 3.037 14 H -0.264 1.264 15 H -0.291 1.291 16 H -0.290 1.290 17 C 0.182 3.818 18 C -0.101 4.101 19 C -0.102 4.102 20 H 0.145 0.855 21 C -0.129 4.129 22 C -0.165 4.165 23 H 0.149 0.851 24 C 0.514 3.486 25 O -0.546 6.546 26 O -0.520 6.520 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.345 0.655 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.007 0.993 35 H 0.056 0.944 36 H 0.250 0.750 37 H -0.014 1.014 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.142 0.858 42 H 0.088 0.912 43 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.545 -8.982 20.931 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.007 4.007 3 H 0.081 0.919 4 N -0.308 5.308 5 C 0.009 3.991 6 C -0.173 4.173 7 C 0.016 3.984 8 N -0.331 5.331 9 C -0.397 4.397 10 H 0.086 0.914 11 C -0.245 4.245 12 N -0.579 5.579 13 Si 0.791 3.209 14 H -0.189 1.189 15 H -0.218 1.218 16 H -0.217 1.217 17 C 0.056 3.944 18 C -0.141 4.141 19 C -0.120 4.120 20 H 0.163 0.837 21 C -0.167 4.167 22 C -0.184 4.184 23 H 0.167 0.833 24 C 0.359 3.641 25 O -0.437 6.437 26 O -0.332 6.332 27 H 0.091 0.909 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.165 0.835 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.025 0.975 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.004 0.996 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.160 0.840 42 H 0.106 0.894 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -2.111 -8.592 21.119 22.897 hybrid contribution 0.147 0.644 -1.923 2.034 sum -1.964 -7.948 19.195 20.868 Atomic orbital electron populations 1.22455 0.95589 1.03031 1.02187 1.21320 0.93441 0.97300 0.88620 0.91934 1.60527 1.63074 1.05862 1.01295 1.21064 0.93887 0.95108 0.89076 1.22420 0.98862 0.99267 0.96770 1.21011 0.87663 0.95968 0.93732 1.44340 1.08138 1.74458 1.06183 1.19534 1.20984 1.12867 0.86362 0.91433 1.25755 1.02740 0.94976 1.00990 1.70282 1.34879 1.10628 1.42069 0.85282 0.77959 0.78501 0.79162 1.18852 1.21822 1.21661 1.20490 0.91300 0.92023 0.90608 1.21852 0.97458 0.99133 0.95612 1.22526 0.90757 1.02463 0.96279 0.83738 1.23292 0.98643 0.97489 0.97240 1.21726 0.92404 1.04114 1.00115 0.83291 1.22546 0.78627 0.82983 0.79928 1.90684 1.71427 1.22638 1.58910 1.84405 1.38312 1.52187 1.58318 0.90919 0.93881 0.90762 0.83526 0.94223 0.91940 0.90068 0.97539 0.92543 0.94121 0.99630 0.93710 0.93289 0.93475 0.83966 0.89375 0.72189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.97 71.98 0.65 -2.61 16 2 C 0.10 2.34 1.61 44.91 0.07 2.41 16 3 H 0.06 1.88 6.23 -2.38 -0.01 1.86 16 4 N -0.68 -18.13 5.14 -469.34 -2.41 -20.55 16 5 C 0.12 4.10 1.94 44.94 0.09 4.18 16 6 C -0.13 -4.45 5.14 30.67 0.16 -4.30 16 7 C 0.14 6.13 6.52 86.36 0.56 6.69 16 8 N -0.61 -32.10 2.99 -699.11 -2.09 -34.19 16 9 C -0.27 -15.31 9.54 84.03 0.80 -14.51 16 10 H 0.07 3.75 7.93 -2.91 -0.02 3.73 16 11 C -0.05 -2.83 4.73 84.86 0.40 -2.43 16 12 N -0.93 -57.82 11.57 21.65 0.25 -57.57 16 13 Si 0.96 46.12 29.62 68.60 2.03 48.15 16 14 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 17 C 0.18 9.53 5.36 86.36 0.46 10.00 16 18 C -0.10 -4.23 5.69 30.67 0.17 -4.06 16 19 C -0.10 -1.63 5.33 -10.77 -0.06 -1.69 16 20 H 0.14 1.49 8.13 -2.39 -0.02 1.47 16 21 C -0.13 -1.86 9.70 30.61 0.30 -1.56 16 22 C -0.16 -2.95 6.28 -11.54 -0.07 -3.02 16 23 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 24 C 0.51 13.42 6.93 71.24 0.49 13.91 16 25 O -0.55 -18.24 14.58 21.96 0.32 -17.92 16 26 O -0.52 -12.27 13.42 -51.37 -0.69 -12.96 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.04 0.98 6.60 -2.38 -0.02 0.96 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.35 8.09 8.08 -89.69 -0.72 7.36 16 31 H 0.04 1.53 7.09 -2.39 -0.02 1.51 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 2.19 7.22 -2.39 -0.02 2.17 16 34 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 35 H 0.06 2.35 7.93 -2.39 -0.02 2.33 16 36 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 37 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 38 H 0.04 2.62 6.19 -2.39 -0.01 2.60 16 39 H 0.05 2.07 7.66 -2.39 -0.02 2.05 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 1.66 7.78 -2.38 -0.02 1.64 16 43 H 0.42 7.91 9.10 -74.05 -0.67 7.24 16 Total: -1.00 -72.78 339.78 1.05 -71.73 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.38 Total: 20.28 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.03 Total: 3.02 kcal Atomic # 7 Polarization: -108.05 SS G_CDS: -4.25 Total: -112.30 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.37 Total: -30.88 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -72.78 1.05 -71.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593219685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.416 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds