Wall clock time and date at job start Tue Mar 31 2020 05:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46347 * 2 1 4 4 N 1.46897 * 109.47369 * 239.99677 * 2 1 3 5 5 C 1.46901 * 110.99750 * 84.99775 * 4 2 1 6 6 C 1.53044 * 109.45998 * 204.99908 * 5 4 2 7 7 C 1.53191 * 109.30964 * 178.61628 * 6 5 4 8 8 N 1.46924 * 108.77613 * 54.63852 * 7 6 5 9 9 C 1.36944 * 120.63102 * 126.41267 * 8 7 6 10 10 H 1.07992 * 119.99624 * 206.36452 * 9 8 7 11 11 C 1.38812 * 120.00030 * 26.36477 * 9 8 7 12 12 N 1.31614 * 120.00021 * 23.92013 * 11 9 8 13 13 Si 1.86796 * 119.99946 * 203.92341 * 11 9 8 14 14 H 1.48494 * 109.47595 * 94.77139 * 13 11 9 15 15 H 1.48501 * 109.47124 * 214.77410 * 13 11 9 16 16 H 1.48509 * 109.46779 * 334.77201 * 13 11 9 17 17 C 1.46927 * 118.73767 * 306.38307 * 8 7 6 18 18 C 1.53042 * 109.45794 * 84.93155 * 5 4 2 19 19 C 1.53002 * 109.46921 * 119.99549 * 2 1 3 20 20 H 1.08992 * 115.54991 * 40.40823 * 19 2 1 21 21 C 1.52996 * 117.49596 * 186.07841 * 19 2 1 22 22 C 1.52992 * 60.00273 * 107.49044 * 21 19 2 23 23 H 1.09001 * 117.50168 * 107.48985 * 22 21 19 24 24 C 1.50702 * 117.49955 * 252.51243 * 22 21 19 25 25 O 1.20824 * 120.00381 * 105.11395 * 24 22 21 26 26 O 1.34233 * 119.99949 * 285.11453 * 24 22 21 27 27 H 1.09000 * 109.47323 * 293.10875 * 1 2 3 28 28 H 1.09000 * 109.47352 * 53.11390 * 1 2 3 29 29 H 1.09004 * 109.46650 * 173.10709 * 1 2 3 30 30 H 1.00895 * 110.99807 * 208.95024 * 4 2 1 31 31 H 1.08999 * 109.45400 * 324.96868 * 5 4 2 32 32 H 1.09007 * 109.49363 * 298.56676 * 6 5 4 33 33 H 1.08996 * 109.49347 * 58.66596 * 6 5 4 34 34 H 1.09007 * 109.58239 * 174.42236 * 7 6 5 35 35 H 1.08992 * 109.58946 * 294.84253 * 7 6 5 36 36 H 0.97008 * 120.00053 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.58796 * 293.82700 * 17 8 7 38 38 H 1.09004 * 109.69895 * 173.46748 * 17 8 7 39 39 H 1.09000 * 109.50313 * 301.33471 * 18 5 4 40 40 H 1.09000 * 109.49532 * 61.40175 * 18 5 4 41 41 H 1.09003 * 117.50221 * 214.97900 * 21 19 2 42 42 H 1.08999 * 117.50352 * 359.97438 * 21 19 2 43 43 H 0.96701 * 116.99886 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 1.9771 -0.5803 -3.6455 7 6 2.0081 0.3800 -4.8387 8 7 3.2127 1.2157 -4.7419 9 6 4.0897 1.2995 -5.7903 10 1 5.1283 1.5328 -5.6081 11 6 3.6438 1.0847 -7.0872 12 7 2.3749 1.2666 -7.3854 13 14 4.8447 0.5372 -8.4091 14 1 4.8119 -0.9428 -8.5256 15 1 4.4609 1.1446 -9.7087 16 1 6.2161 0.9748 -8.0439 17 6 3.4580 1.9602 -3.4993 18 6 3.4108 0.9822 -2.3211 19 6 2.0400 -0.7212 1.2493 20 1 1.4907 -1.6196 1.5306 21 6 3.5478 -0.7048 1.5084 22 6 2.6132 0.1392 2.3772 23 1 2.4409 -0.1930 3.4010 24 6 2.6321 1.6322 2.1726 25 8 1.7240 2.1734 1.5874 26 8 3.6578 2.3608 2.6404 27 1 -0.3634 0.4033 0.9452 28 1 -0.3634 0.6168 -0.8219 29 1 -0.3633 -1.0203 -0.1233 30 1 2.9174 -1.1204 -1.0286 31 1 1.2572 0.9323 -2.2907 32 1 2.8160 -1.2730 -3.7141 33 1 1.0414 -1.1393 -3.6527 34 1 2.0331 -0.1911 -5.7668 35 1 1.1214 1.0136 -4.8210 36 1 2.0631 1.1161 -8.2916 37 1 2.6896 2.7227 -3.3723 38 1 4.4390 2.4336 -3.5421 39 1 3.4957 1.5352 -1.3856 40 1 4.2361 0.2747 -2.4016 41 1 3.9905 -1.5923 1.9606 42 1 4.1765 -0.1806 0.7886 43 1 3.6254 3.3147 2.4853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593219686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:23 Heat of formation + Delta-G solvation = -46.141035 kcal Electronic energy + Delta-G solvation = -23235.113202 eV Core-core repulsion = 19895.445167 eV Total energy + Delta-G solvation = -3339.668035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.85024 -38.63348 -37.31936 -36.18523 -34.76361 -32.35839 -30.54166 -29.78790 -28.09170 -25.80706 -24.63055 -23.32319 -22.16255 -21.64568 -20.86546 -20.06928 -19.14498 -18.20912 -17.09915 -16.67935 -16.22088 -15.03809 -14.97749 -14.76808 -14.54124 -13.94919 -13.71947 -13.43881 -13.11086 -12.93876 -12.77766 -12.49535 -12.26596 -12.01160 -11.85855 -11.57839 -11.35700 -11.22221 -11.00228 -10.76942 -10.71175 -10.64513 -10.63299 -10.34761 -10.19296 -10.12850 -9.91611 -9.64464 -9.39230 -8.42156 -7.95722 -6.67520 -5.77171 -3.13614 1.93093 2.68737 3.29695 3.40754 3.48384 3.49538 4.13578 4.36233 4.53850 4.59640 4.76437 5.04542 5.09467 5.29276 5.35759 5.42207 5.45629 5.55148 5.59921 5.67275 5.78231 5.86584 5.92815 6.01681 6.10594 6.19461 6.28734 6.36753 6.44364 6.55254 6.66123 6.70007 6.74382 6.89318 6.97863 7.38092 7.45221 7.66033 7.67402 7.76064 7.84756 8.46569 9.23702 9.89086 10.46338 11.31679 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027780 B = 0.003953 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.676336 B = 7081.236760 C = 7386.327076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.099 3.901 3 H 0.064 0.936 4 N -0.682 5.682 5 C 0.097 3.903 6 C -0.123 4.123 7 C 0.171 3.829 8 N -0.591 5.591 9 C -0.256 4.256 10 H 0.065 0.935 11 C 0.005 3.995 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.288 1.288 15 H -0.292 1.292 16 H -0.279 1.279 17 C 0.150 3.850 18 C -0.157 4.157 19 C -0.112 4.112 20 H 0.123 0.877 21 C -0.154 4.154 22 C -0.162 4.162 23 H 0.142 0.858 24 C 0.504 3.496 25 O -0.496 6.496 26 O -0.515 6.515 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.335 0.665 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.017 0.983 36 H 0.253 0.747 37 H 0.015 0.985 38 H 0.051 0.949 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.127 -3.393 20.804 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.010 4.010 3 H 0.081 0.919 4 N -0.312 5.312 5 C -0.013 4.013 6 C -0.163 4.163 7 C 0.045 3.955 8 N -0.314 5.314 9 C -0.385 4.385 10 H 0.083 0.917 11 C -0.195 4.195 12 N -0.539 5.539 13 Si 0.726 3.274 14 H -0.215 1.215 15 H -0.219 1.219 16 H -0.204 1.204 17 C 0.023 3.977 18 C -0.198 4.198 19 C -0.131 4.131 20 H 0.141 0.859 21 C -0.191 4.191 22 C -0.182 4.182 23 H 0.159 0.841 24 C 0.346 3.654 25 O -0.383 6.383 26 O -0.327 6.327 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.153 0.847 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.120 0.880 43 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -0.823 -3.911 20.366 20.755 hybrid contribution 1.343 0.954 -0.435 1.704 sum 0.520 -2.957 19.931 20.156 Atomic orbital electron populations 1.21649 0.94076 1.01713 1.01135 1.21346 0.96490 0.96304 0.86885 0.91883 1.60814 1.32974 1.33489 1.03968 1.21544 0.96360 0.92986 0.90366 1.22144 1.00542 0.98819 0.94782 1.20755 0.88010 0.91259 0.95492 1.44091 1.25481 1.50148 1.11646 1.19168 0.89741 1.44555 0.85077 0.91731 1.24936 0.96010 1.01562 0.96947 1.70133 1.14599 1.50160 1.19050 0.86369 0.80873 0.78775 0.81393 1.21461 1.21887 1.20422 1.20786 0.98444 0.92065 0.86406 1.22674 0.98385 1.00065 0.98695 1.22740 0.95846 0.99533 0.94956 0.85860 1.23140 0.93473 1.01256 1.01216 1.21784 1.10081 0.86443 0.99859 0.84065 1.22416 0.78809 0.89566 0.74651 1.90749 1.36703 1.72962 1.37843 1.84523 1.47245 1.26195 1.74744 0.92777 0.92769 0.92377 0.84676 0.91301 0.92846 0.92672 0.89963 0.96493 0.93689 0.96698 0.93050 0.94194 0.92304 0.87011 0.87999 0.73007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.36 37.16 0.35 -1.34 16 2 C 0.10 1.30 1.90 -67.71 -0.13 1.17 16 3 H 0.06 0.96 4.18 -51.93 -0.22 0.75 16 4 N -0.68 -9.92 6.06 -99.69 -0.60 -10.53 16 5 C 0.10 1.71 2.24 -67.67 -0.15 1.55 16 6 C -0.12 -2.45 5.69 -26.61 -0.15 -2.60 16 7 C 0.17 4.19 5.37 -3.71 -0.02 4.17 16 8 N -0.59 -15.16 2.99 -172.32 -0.52 -15.67 16 9 C -0.26 -7.17 9.55 -15.06 -0.14 -7.32 16 10 H 0.06 1.79 7.93 -52.49 -0.42 1.37 16 11 C 0.00 0.13 4.73 -17.43 -0.08 0.05 16 12 N -0.90 -26.50 11.54 55.49 0.64 -25.86 16 13 Si 0.90 21.93 29.62 -169.99 -5.03 16.89 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.15 3.28 6.51 -3.71 -0.02 3.26 16 18 C -0.16 -2.83 5.31 -26.61 -0.14 -2.98 16 19 C -0.11 -1.10 5.15 -90.62 -0.47 -1.56 16 20 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 21 C -0.15 -1.28 9.30 -26.74 -0.25 -1.53 16 22 C -0.16 -1.42 6.27 -91.77 -0.58 -1.99 16 23 H 0.14 0.89 8.14 -51.93 -0.42 0.47 16 24 C 0.50 5.45 7.41 36.01 0.27 5.72 16 25 O -0.50 -6.93 15.02 -18.75 -0.28 -7.21 16 26 O -0.51 -4.47 13.42 -39.27 -0.53 -5.00 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.79 7.53 -51.93 -0.39 0.40 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.34 4.57 7.56 -39.29 -0.30 4.28 16 31 H 0.07 1.32 7.18 -51.93 -0.37 0.95 16 32 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 2.23 6.16 -51.92 -0.32 1.91 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 39 H 0.04 0.66 7.41 -51.93 -0.38 0.27 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.41 2.03 9.10 45.56 0.41 2.45 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -32.19 341.62 -8.87 -41.06 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.18 Total: 4.57 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.52 Total: -3.41 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.48 Total: -52.05 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.81 Total: -12.20 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.19 -8.87 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593219686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.081 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds