Wall clock time and date at job start Tue Mar 31 2020 05:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46347 * 2 1 4 4 N 1.46897 * 109.47369 * 239.99677 * 2 1 3 5 5 C 1.46901 * 110.99750 * 84.99775 * 4 2 1 6 6 C 1.53044 * 109.45998 * 204.99908 * 5 4 2 7 7 C 1.53191 * 109.30964 * 178.61628 * 6 5 4 8 8 N 1.46924 * 108.77613 * 54.63852 * 7 6 5 9 9 C 1.36944 * 120.63102 * 126.41267 * 8 7 6 10 10 H 1.07992 * 119.99624 * 206.36452 * 9 8 7 11 11 C 1.38812 * 120.00030 * 26.36477 * 9 8 7 12 12 N 1.31614 * 120.00021 * 23.92013 * 11 9 8 13 13 Si 1.86796 * 119.99946 * 203.92341 * 11 9 8 14 14 H 1.48494 * 109.47595 * 94.77139 * 13 11 9 15 15 H 1.48501 * 109.47124 * 214.77410 * 13 11 9 16 16 H 1.48509 * 109.46779 * 334.77201 * 13 11 9 17 17 C 1.46927 * 118.73767 * 306.38307 * 8 7 6 18 18 C 1.53042 * 109.45794 * 84.93155 * 5 4 2 19 19 C 1.53002 * 109.46921 * 119.99549 * 2 1 3 20 20 H 1.08992 * 115.54991 * 40.40823 * 19 2 1 21 21 C 1.52996 * 117.49596 * 186.07841 * 19 2 1 22 22 C 1.52992 * 60.00273 * 107.49044 * 21 19 2 23 23 H 1.09001 * 117.50168 * 107.48985 * 22 21 19 24 24 C 1.50702 * 117.49955 * 252.51243 * 22 21 19 25 25 O 1.20824 * 120.00381 * 105.11395 * 24 22 21 26 26 O 1.34233 * 119.99949 * 285.11453 * 24 22 21 27 27 H 1.09000 * 109.47323 * 293.10875 * 1 2 3 28 28 H 1.09000 * 109.47352 * 53.11390 * 1 2 3 29 29 H 1.09004 * 109.46650 * 173.10709 * 1 2 3 30 30 H 1.00895 * 110.99807 * 208.95024 * 4 2 1 31 31 H 1.08999 * 109.45400 * 324.96868 * 5 4 2 32 32 H 1.09007 * 109.49363 * 298.56676 * 6 5 4 33 33 H 1.08996 * 109.49347 * 58.66596 * 6 5 4 34 34 H 1.09007 * 109.58239 * 174.42236 * 7 6 5 35 35 H 1.08992 * 109.58946 * 294.84253 * 7 6 5 36 36 H 0.97008 * 120.00053 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.58796 * 293.82700 * 17 8 7 38 38 H 1.09004 * 109.69895 * 173.46748 * 17 8 7 39 39 H 1.09000 * 109.50313 * 301.33471 * 18 5 4 40 40 H 1.09000 * 109.49532 * 61.40175 * 18 5 4 41 41 H 1.09003 * 117.50221 * 214.97900 * 21 19 2 42 42 H 1.08999 * 117.50352 * 359.97438 * 21 19 2 43 43 H 0.96701 * 116.99886 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0825 0.2225 -2.3468 6 6 1.9771 -0.5803 -3.6455 7 6 2.0081 0.3800 -4.8387 8 7 3.2127 1.2157 -4.7419 9 6 4.0897 1.2995 -5.7903 10 1 5.1283 1.5328 -5.6081 11 6 3.6438 1.0847 -7.0872 12 7 2.3749 1.2666 -7.3854 13 14 4.8447 0.5372 -8.4091 14 1 4.8119 -0.9428 -8.5256 15 1 4.4609 1.1446 -9.7087 16 1 6.2161 0.9748 -8.0439 17 6 3.4580 1.9602 -3.4993 18 6 3.4108 0.9822 -2.3211 19 6 2.0400 -0.7212 1.2493 20 1 1.4907 -1.6196 1.5306 21 6 3.5478 -0.7048 1.5084 22 6 2.6132 0.1392 2.3772 23 1 2.4409 -0.1930 3.4010 24 6 2.6321 1.6322 2.1726 25 8 1.7240 2.1734 1.5874 26 8 3.6578 2.3608 2.6404 27 1 -0.3634 0.4033 0.9452 28 1 -0.3634 0.6168 -0.8219 29 1 -0.3633 -1.0203 -0.1233 30 1 2.9174 -1.1204 -1.0286 31 1 1.2572 0.9323 -2.2907 32 1 2.8160 -1.2730 -3.7141 33 1 1.0414 -1.1393 -3.6527 34 1 2.0331 -0.1911 -5.7668 35 1 1.1214 1.0136 -4.8210 36 1 2.0631 1.1161 -8.2916 37 1 2.6896 2.7227 -3.3723 38 1 4.4390 2.4336 -3.5421 39 1 3.4957 1.5352 -1.3856 40 1 4.2361 0.2747 -2.4016 41 1 3.9905 -1.5923 1.9606 42 1 4.1765 -0.1806 0.7886 43 1 3.6254 3.3147 2.4853 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593219686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:22 Heat of formation + Delta-G solvation = -68.026178 kcal Electronic energy + Delta-G solvation = -23236.062213 eV Core-core repulsion = 19895.445167 eV Total energy + Delta-G solvation = -3340.617046 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.66337 -39.90645 -38.52924 -37.01395 -36.20322 -34.08153 -32.19633 -31.52532 -29.57366 -26.81401 -26.25993 -24.44850 -23.80027 -23.02419 -21.92724 -21.16501 -20.61443 -19.02243 -18.77233 -17.80571 -17.16196 -16.84462 -16.09774 -16.01502 -15.58053 -15.41316 -15.29020 -15.04712 -14.73467 -14.35226 -14.16726 -13.73056 -13.39312 -13.15737 -13.10233 -13.05510 -12.71828 -12.61334 -12.49927 -12.43107 -12.12999 -11.98374 -11.92031 -11.79792 -11.62622 -11.46037 -11.29069 -11.14792 -11.07207 -10.54409 -9.22594 -8.76373 -7.91386 -5.31718 1.14390 1.46065 1.48314 1.57497 2.03470 2.50713 2.58350 3.17375 3.25559 3.59712 3.64685 3.83289 3.89313 3.94810 4.09859 4.26058 4.34685 4.39273 4.48176 4.49271 4.66136 4.70127 4.80299 4.82711 4.89054 4.93528 4.95292 5.03414 5.07905 5.12613 5.24822 5.26103 5.27919 5.39451 5.45893 5.63014 5.63547 5.68107 6.16722 6.34830 6.59237 6.97917 7.10981 7.82634 8.35974 9.15967 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027780 B = 0.003953 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.676336 B = 7081.236760 C = 7386.327076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.099 3.901 3 H 0.043 0.957 4 N -0.674 5.674 5 C 0.109 3.891 6 C -0.108 4.108 7 C 0.178 3.822 8 N -0.607 5.607 9 C -0.269 4.269 10 H 0.066 0.934 11 C -0.047 4.047 12 N -0.931 5.931 13 Si 0.965 3.035 14 H -0.284 1.284 15 H -0.295 1.295 16 H -0.267 1.267 17 C 0.145 3.855 18 C -0.139 4.139 19 C -0.122 4.122 20 H 0.142 0.858 21 C -0.141 4.141 22 C -0.158 4.158 23 H 0.172 0.828 24 C 0.501 3.499 25 O -0.536 6.536 26 O -0.512 6.512 27 H 0.060 0.940 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.344 0.656 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.050 0.950 35 H -0.009 1.009 36 H 0.251 0.749 37 H 0.003 0.997 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 -4.903 22.988 23.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.010 4.010 3 H 0.061 0.939 4 N -0.305 5.305 5 C -0.001 4.001 6 C -0.147 4.147 7 C 0.052 3.948 8 N -0.331 5.331 9 C -0.399 4.399 10 H 0.084 0.916 11 C -0.243 4.243 12 N -0.577 5.577 13 Si 0.792 3.208 14 H -0.211 1.211 15 H -0.222 1.222 16 H -0.192 1.192 17 C 0.019 3.981 18 C -0.180 4.180 19 C -0.141 4.141 20 H 0.160 0.840 21 C -0.178 4.178 22 C -0.177 4.177 23 H 0.189 0.811 24 C 0.345 3.655 25 O -0.426 6.426 26 O -0.325 6.325 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.009 0.991 36 H 0.060 0.940 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.159 0.841 42 H 0.107 0.893 43 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 0.687 -5.415 22.598 23.247 hybrid contribution 0.875 1.534 -1.065 2.062 sum 1.562 -3.881 21.533 21.935 Atomic orbital electron populations 1.21611 0.94431 1.01665 1.00522 1.21299 0.96237 0.95639 0.87778 0.93901 1.60686 1.33540 1.32521 1.03747 1.21233 0.95492 0.92685 0.90712 1.21899 1.01060 0.97771 0.93995 1.20564 0.86816 0.91199 0.96216 1.44341 1.25350 1.51010 1.12358 1.19502 0.90250 1.44180 0.86001 0.91581 1.25732 0.97650 1.01834 0.99059 1.70271 1.16545 1.51513 1.19329 0.85299 0.79133 0.78073 0.78254 1.21119 1.22199 1.19150 1.20929 0.98043 0.92649 0.86480 1.22465 0.98721 0.99267 0.97532 1.22650 0.97333 1.00244 0.93838 0.83984 1.23235 0.92238 1.01836 1.00492 1.21965 1.09749 0.84967 1.01061 0.81058 1.22907 0.78354 0.90606 0.73641 1.90745 1.38219 1.73912 1.39723 1.84497 1.46336 1.27519 1.74152 0.92092 0.95172 0.91565 0.83616 0.93108 0.92741 0.91661 0.93105 0.99090 0.94023 0.97871 0.92844 0.92302 0.91744 0.84122 0.89299 0.71343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.36 71.98 0.67 -2.51 16 2 C 0.10 2.45 1.90 44.92 0.09 2.53 16 3 H 0.04 1.27 4.18 -2.39 -0.01 1.26 16 4 N -0.67 -18.41 6.06 -469.31 -2.84 -21.25 16 5 C 0.11 3.79 2.24 44.94 0.10 3.89 16 6 C -0.11 -4.28 5.69 30.67 0.17 -4.10 16 7 C 0.18 9.02 5.37 86.36 0.46 9.48 16 8 N -0.61 -31.75 2.99 -699.09 -2.09 -33.85 16 9 C -0.27 -15.27 9.55 84.03 0.80 -14.47 16 10 H 0.07 3.65 7.93 -2.91 -0.02 3.63 16 11 C -0.05 -2.67 4.73 84.86 0.40 -2.27 16 12 N -0.93 -56.71 11.54 21.65 0.25 -56.46 16 13 Si 0.96 45.53 29.62 68.60 2.03 47.56 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 15 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 C 0.15 6.39 6.51 86.36 0.56 6.96 16 18 C -0.14 -4.87 5.31 30.67 0.16 -4.71 16 19 C -0.12 -2.00 5.15 -10.79 -0.06 -2.06 16 20 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 21 C -0.14 -1.82 9.30 30.59 0.28 -1.54 16 22 C -0.16 -2.24 6.27 -11.54 -0.07 -2.32 16 23 H 0.17 1.40 8.14 -2.39 -0.02 1.38 16 24 C 0.50 9.91 7.41 71.24 0.53 10.43 16 25 O -0.54 -14.62 15.02 21.97 0.33 -14.29 16 26 O -0.51 -7.82 13.42 -51.45 -0.69 -8.51 16 27 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.03 0.89 7.53 -2.39 -0.02 0.87 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.34 8.45 7.56 -89.70 -0.68 7.77 16 31 H 0.05 1.97 7.18 -2.39 -0.02 1.96 16 32 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.05 2.87 6.16 -2.38 -0.01 2.85 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 39 H 0.06 1.86 7.41 -2.39 -0.02 1.84 16 40 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.43 3.56 9.10 -74.06 -0.67 2.89 16 Total: -1.00 -71.02 341.62 0.76 -70.26 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -0.34 Total: 17.21 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 4.11 Total: -0.68 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -4.69 Total: -111.55 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.36 Total: -22.80 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.02 0.76 -70.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593219686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.234 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds