Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47262 * 2 1 4 4 N 1.46894 * 109.46876 * 239.99800 * 2 1 3 5 5 C 1.46908 * 110.99769 * 151.76236 * 4 2 1 6 6 C 1.53039 * 109.45495 * 273.47786 * 5 4 2 7 7 C 1.53201 * 109.30985 * 178.60257 * 6 5 4 8 8 N 1.46925 * 108.76274 * 54.65401 * 7 6 5 9 9 C 1.36941 * 120.62643 * 126.36408 * 8 7 6 10 10 H 1.07993 * 120.00386 * 324.89594 * 9 8 7 11 11 C 1.38813 * 119.99556 * 144.89671 * 9 8 7 12 12 N 1.31618 * 120.00338 * 345.38832 * 11 9 8 13 13 Si 1.86805 * 119.99638 * 165.39128 * 11 9 8 14 14 H 1.48500 * 109.47158 * 60.00058 * 13 11 9 15 15 H 1.48507 * 109.46969 * 179.97438 * 13 11 9 16 16 H 1.48491 * 109.47164 * 299.99678 * 13 11 9 17 17 C 1.46925 * 118.74120 * 306.38256 * 8 7 6 18 18 C 1.53039 * 109.45794 * 153.42615 * 5 4 2 19 19 C 1.53001 * 109.46916 * 119.99902 * 2 1 3 20 20 H 1.08999 * 115.56175 * 85.68831 * 19 2 1 21 21 C 1.52998 * 117.49796 * 231.37687 * 19 2 1 22 22 C 1.52995 * 60.00052 * 107.49315 * 21 19 2 23 23 H 1.09003 * 117.49736 * 252.48630 * 22 21 19 24 24 C 1.50697 * 117.50125 * 107.49332 * 22 21 19 25 25 O 1.20823 * 119.99863 * 291.38884 * 24 22 21 26 26 O 1.34227 * 120.00243 * 111.39146 * 24 22 21 27 27 H 1.09001 * 109.46902 * 297.02521 * 1 2 3 28 28 H 1.08999 * 109.46666 * 57.01797 * 1 2 3 29 29 H 1.09000 * 109.47114 * 177.02421 * 1 2 3 30 30 H 1.00900 * 111.00407 * 27.80358 * 4 2 1 31 31 H 1.08992 * 109.46126 * 33.45039 * 5 4 2 32 32 H 1.09000 * 109.49994 * 298.56038 * 6 5 4 33 33 H 1.08999 * 109.50241 * 58.66183 * 6 5 4 34 34 H 1.09000 * 109.59229 * 294.86550 * 7 6 5 35 35 H 1.08998 * 109.70214 * 174.50401 * 7 6 5 36 36 H 0.96996 * 119.99886 * 179.97438 * 12 11 9 37 37 H 1.09001 * 109.58473 * 293.82533 * 17 8 7 38 38 H 1.09003 * 109.58649 * 173.39979 * 17 8 7 39 39 H 1.09003 * 109.49855 * 301.33034 * 18 5 4 40 40 H 1.08997 * 109.50065 * 61.40000 * 18 5 4 41 41 H 1.09003 * 117.50070 * 359.97438 * 21 19 2 42 42 H 1.09007 * 117.51715 * 214.97072 * 21 19 2 43 43 H 0.96701 * 117.00474 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 3.3343 -0.1774 -1.6049 6 6 3.1468 1.0427 -2.5095 7 6 4.5195 1.5981 -2.9021 8 7 5.3123 0.5172 -3.5037 9 6 5.8841 0.6753 -4.7379 10 1 5.3751 1.2470 -5.4997 11 6 7.1181 0.1006 -5.0097 12 7 7.8687 -0.3436 -4.0240 13 14 7.7134 -0.0422 -6.7746 14 1 7.8080 1.3121 -7.3762 15 1 9.0510 -0.6870 -6.7951 16 1 6.7548 -0.8648 -7.5552 17 6 5.4794 -0.7365 -2.7561 18 6 4.0959 -1.2656 -2.3651 19 6 2.0400 -0.7212 1.2493 20 1 2.1271 -1.8044 1.1644 21 6 3.0741 0.0052 2.1117 22 6 1.6358 -0.1495 2.6096 23 1 1.0066 0.7406 2.6150 24 6 1.3884 -1.1270 3.7296 25 8 1.5118 -2.3130 3.5346 26 8 1.0310 -0.6801 4.9438 27 1 -0.3633 0.4670 0.9155 28 1 -0.3632 0.5594 -0.8621 29 1 -0.3633 -1.0263 -0.0533 30 1 1.3546 -0.6214 -1.9549 31 1 3.9004 0.1109 -0.7192 32 1 2.6025 0.7498 -3.4073 33 1 2.5838 1.8084 -1.9758 34 1 5.0288 1.9746 -2.0149 35 1 4.3965 2.4060 -3.6233 36 1 8.7308 -0.7455 -4.2140 37 1 6.0670 -0.5504 -1.8571 38 1 5.9877 -1.4701 -3.3820 39 1 4.2087 -2.1431 -1.7283 40 1 3.5422 -1.5369 -3.2638 41 1 3.3915 0.9967 1.7888 42 1 3.8416 -0.5999 2.5945 43 1 0.8829 -1.3449 5.6303 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593219687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = -54.376049 kcal Electronic energy + Delta-G solvation = -22674.425303 eV Core-core repulsion = 19334.400171 eV Total energy + Delta-G solvation = -3340.025132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66042 -38.75547 -37.31727 -36.21019 -34.77162 -32.48170 -30.64354 -29.78938 -27.99344 -25.96584 -24.52378 -23.34903 -22.13820 -21.44437 -21.20170 -19.80426 -19.12006 -18.31470 -17.19345 -16.74636 -15.85526 -15.27792 -15.09765 -14.69542 -14.56031 -13.95848 -13.60628 -13.47027 -13.21094 -12.92296 -12.76284 -12.67643 -12.50717 -11.95077 -11.81572 -11.70725 -11.36191 -11.20024 -11.03277 -10.85646 -10.74419 -10.71410 -10.59678 -10.29678 -10.19892 -10.15016 -9.97262 -9.73602 -9.39920 -8.46202 -8.09140 -6.54196 -5.77092 -3.26715 1.89203 2.71379 3.39144 3.44769 3.46050 3.56045 4.19915 4.48818 4.50883 4.68916 4.76749 5.01173 5.20049 5.21762 5.25238 5.38951 5.44454 5.54407 5.56080 5.63741 5.68810 5.72985 5.89244 5.91696 6.03385 6.09593 6.19642 6.26973 6.35299 6.51485 6.65394 6.66763 6.74149 6.89126 6.98262 7.35579 7.40581 7.63878 7.68469 7.69976 7.82922 8.52359 9.24998 9.86150 10.47738 11.31012 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033236 B = 0.003351 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.252820 B = 8352.625654 C = 8700.733644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.112 3.888 3 H 0.051 0.949 4 N -0.681 5.681 5 C 0.097 3.903 6 C -0.160 4.160 7 C 0.150 3.850 8 N -0.590 5.590 9 C -0.260 4.260 10 H 0.060 0.940 11 C 0.010 3.990 12 N -0.899 5.899 13 Si 0.901 3.099 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.176 3.824 18 C -0.125 4.125 19 C -0.091 4.091 20 H 0.127 0.873 21 C -0.144 4.144 22 C -0.174 4.174 23 H 0.133 0.867 24 C 0.509 3.491 25 O -0.512 6.512 26 O -0.516 6.516 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.341 0.659 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.015 0.985 35 H 0.051 0.949 36 H 0.254 0.746 37 H 0.018 0.982 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 1.407 13.717 20.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.001 3.999 3 H 0.069 0.931 4 N -0.312 5.312 5 C -0.012 4.012 6 C -0.200 4.200 7 C 0.023 3.977 8 N -0.313 5.313 9 C -0.390 4.390 10 H 0.077 0.923 11 C -0.190 4.190 12 N -0.542 5.542 13 Si 0.731 3.269 14 H -0.208 1.208 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.049 3.951 18 C -0.165 4.165 19 C -0.109 4.109 20 H 0.145 0.855 21 C -0.181 4.181 22 C -0.194 4.194 23 H 0.151 0.849 24 C 0.352 3.648 25 O -0.400 6.400 26 O -0.327 6.327 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -13.955 0.764 13.695 19.567 hybrid contribution 0.001 0.366 -0.643 0.740 sum -13.954 1.131 13.052 19.140 Atomic orbital electron populations 1.21978 0.94673 1.02767 1.01795 1.21021 0.94143 0.94924 0.89761 0.93144 1.60591 1.05159 1.58607 1.06818 1.21565 0.88745 0.93871 0.97027 1.22706 1.00236 0.97756 0.99347 1.20818 0.89480 0.91436 0.95979 1.43967 1.59149 1.09927 1.18274 1.19045 0.98658 1.32915 0.88360 0.92260 1.25223 0.95287 1.01259 0.97196 1.70009 1.10909 1.43392 1.29843 0.86407 0.77688 0.77953 0.84871 1.20841 1.21608 1.20914 1.20694 0.90766 0.88602 0.95005 1.22171 0.98934 0.96770 0.98612 1.22592 0.99281 1.01467 0.87609 0.85522 1.23213 0.89540 1.03402 1.01974 1.21781 1.03054 1.01272 0.93269 0.84945 1.22423 0.72065 0.87989 0.82330 1.90736 1.47936 1.18370 1.82975 1.84516 1.80926 1.45645 1.21649 0.92188 0.92443 0.91575 0.84027 0.91160 0.92277 0.93777 0.96730 0.93027 0.93560 0.96361 0.90618 0.92747 0.92887 0.87139 0.87938 0.73209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.03 37.16 0.34 -1.10 16 2 C 0.11 1.25 2.63 -67.71 -0.18 1.07 16 3 H 0.05 0.58 6.98 -51.93 -0.36 0.21 16 4 N -0.68 -9.20 6.07 -99.70 -0.61 -9.80 16 5 C 0.10 1.58 2.23 -67.67 -0.15 1.43 16 6 C -0.16 -2.67 5.31 -26.61 -0.14 -2.82 16 7 C 0.15 3.13 6.52 -3.71 -0.02 3.11 16 8 N -0.59 -14.79 2.95 -172.31 -0.51 -15.30 16 9 C -0.26 -7.17 9.51 -15.06 -0.14 -7.32 16 10 H 0.06 1.61 7.87 -52.49 -0.41 1.20 16 11 C 0.01 0.28 4.92 -17.43 -0.09 0.20 16 12 N -0.90 -26.24 11.59 55.49 0.64 -25.60 16 13 Si 0.90 21.72 29.58 -169.99 -5.03 16.69 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 C 0.18 4.18 5.26 -3.71 -0.02 4.16 16 18 C -0.13 -2.41 5.69 -26.61 -0.15 -2.56 16 19 C -0.09 -1.04 4.82 -90.62 -0.44 -1.48 16 20 H 0.13 1.76 7.67 -51.93 -0.40 1.36 16 21 C -0.14 -1.51 9.88 -26.73 -0.26 -1.77 16 22 C -0.17 -1.71 5.47 -91.78 -0.50 -2.21 16 23 H 0.13 1.06 7.59 -51.93 -0.39 0.67 16 24 C 0.51 5.54 8.11 36.00 0.29 5.83 16 25 O -0.51 -7.25 17.02 -18.75 -0.32 -7.56 16 26 O -0.52 -4.19 13.42 -39.25 -0.53 -4.72 16 27 H 0.06 0.48 7.19 -51.93 -0.37 0.11 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.34 4.37 8.04 -39.29 -0.32 4.05 16 31 H 0.07 1.19 7.75 -51.93 -0.40 0.79 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.64 7.58 -51.93 -0.39 0.25 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 2.02 6.54 -51.93 -0.34 1.68 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.11 1.06 8.05 -51.93 -0.42 0.64 16 42 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.41 1.58 9.10 45.56 0.41 1.99 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -31.70 347.07 -8.91 -40.61 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.32 Total: 3.90 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -1.47 Total: -3.45 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.47 Total: -50.70 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.85 Total: -12.28 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.70 -8.91 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593219687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.769 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds