Wall clock time and date at job start Tue Mar 31 2020 05:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46988 * 2 1 4 4 N 1.46903 * 109.47316 * 239.99754 * 2 1 3 5 5 C 1.46897 * 110.99793 * 84.99795 * 4 2 1 6 6 C 1.53042 * 109.45816 * 204.99929 * 5 4 2 7 7 C 1.53196 * 109.31301 * 178.62944 * 6 5 4 8 8 N 1.46919 * 108.77357 * 54.63738 * 7 6 5 9 9 C 1.36935 * 120.62952 * 126.36714 * 8 7 6 10 10 H 1.07992 * 120.00276 * 332.45452 * 9 8 7 11 11 C 1.38815 * 120.00026 * 152.17450 * 9 8 7 12 12 N 1.31620 * 119.99785 * 343.17001 * 11 9 8 13 13 Si 1.86799 * 120.00242 * 163.17219 * 11 9 8 14 14 H 1.48499 * 109.47051 * 59.99668 * 13 11 9 15 15 H 1.48497 * 109.47273 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46803 * 299.99780 * 13 11 9 17 17 C 1.46930 * 118.74055 * 306.64082 * 8 7 6 18 18 C 1.52762 * 109.00426 * 53.31040 * 17 8 7 19 19 C 1.53002 * 109.47314 * 119.99640 * 2 1 3 20 20 H 1.08999 * 115.55479 * 154.27904 * 19 2 1 21 21 C 1.52997 * 117.49506 * 8.60848 * 19 2 1 22 22 C 1.52999 * 60.00078 * 252.51229 * 21 19 2 23 23 H 1.08992 * 117.50265 * 107.49321 * 22 21 19 24 24 C 1.50707 * 117.49660 * 252.51551 * 22 21 19 25 25 O 1.20816 * 120.00155 * 68.62016 * 24 22 21 26 26 O 1.34232 * 119.99375 * 248.61793 * 24 22 21 27 27 H 1.09003 * 109.47113 * 300.00522 * 1 2 3 28 28 H 1.08997 * 109.47181 * 60.00005 * 1 2 3 29 29 H 1.08998 * 109.47058 * 180.02562 * 1 2 3 30 30 H 1.00897 * 110.99991 * 208.95588 * 4 2 1 31 31 H 1.08998 * 109.46407 * 324.97802 * 5 4 2 32 32 H 1.09005 * 109.49382 * 58.68057 * 6 5 4 33 33 H 1.08991 * 109.52573 * 298.60150 * 6 5 4 34 34 H 1.09000 * 109.58299 * 294.85003 * 7 6 5 35 35 H 1.08994 * 109.70288 * 174.49711 * 7 6 5 36 36 H 0.97003 * 120.00199 * 179.97438 * 12 11 9 37 37 H 1.08999 * 109.58738 * 173.14187 * 17 8 7 38 38 H 1.08996 * 109.58558 * 293.57263 * 17 8 7 39 39 H 1.09005 * 109.56252 * 185.54994 * 18 17 8 40 40 H 1.08999 * 109.38709 * 65.51901 * 18 17 8 41 41 H 1.09004 * 117.50190 * 359.97438 * 21 19 2 42 42 H 1.09007 * 117.49941 * 145.02207 * 21 19 2 43 43 H 0.96708 * 116.99528 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0824 0.2225 -2.3469 6 6 1.9770 -0.5803 -3.6455 7 6 2.0083 0.3799 -4.8388 8 7 3.2130 1.2153 -4.7419 9 6 4.0907 1.2981 -5.7898 10 1 4.1820 0.4759 -6.4840 11 6 4.8589 2.4412 -5.9631 12 7 4.5269 3.5566 -5.3482 13 14 6.3637 2.3966 -7.0690 14 1 5.9539 2.0273 -8.4477 15 1 7.0062 3.7353 -7.0848 16 1 7.3275 1.3916 -6.5530 17 6 3.4614 1.9554 -3.4972 18 6 3.4109 0.9818 -2.3211 19 6 2.0400 -0.7212 1.2493 20 1 3.0320 -1.1648 1.1641 21 6 1.0104 -1.4537 2.1119 22 6 1.6360 -0.1491 2.6096 23 1 1.0069 0.7409 2.6146 24 6 2.6402 -0.2419 3.7295 25 8 3.7171 -0.7536 3.5343 26 8 2.3381 0.2440 4.9437 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.9173 -1.1206 -1.0287 31 1 1.2573 0.9325 -2.2908 32 1 1.0411 -1.1392 -3.6527 33 1 2.8152 -1.2736 -3.7143 34 1 1.1217 1.0137 -4.8210 35 1 2.0320 -0.1893 -5.7680 36 1 5.0638 4.3554 -5.4690 37 1 4.4449 2.4233 -3.5403 38 1 2.6958 2.7203 -3.3679 39 1 3.4958 1.5348 -1.3856 40 1 4.2361 0.2742 -2.4014 41 1 -0.0304 -1.4215 1.7896 42 1 1.3251 -2.3790 2.5945 43 1 3.0144 0.1620 5.6301 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593219688.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:28 Heat of formation + Delta-G solvation = -48.844640 kcal Electronic energy + Delta-G solvation = -22563.976524 eV Core-core repulsion = 19224.191252 eV Total energy + Delta-G solvation = -3339.785272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.76723 -38.86840 -37.50988 -36.29536 -34.75645 -32.31472 -30.41874 -29.74338 -28.19736 -25.78704 -24.98965 -23.79024 -22.06099 -21.50055 -20.77447 -19.74770 -19.04513 -18.40171 -17.30586 -16.81105 -15.97125 -15.40136 -15.21501 -14.73246 -14.62875 -14.02240 -13.63307 -13.51320 -13.24249 -13.00645 -12.78293 -12.46578 -12.14968 -11.92984 -11.79457 -11.73297 -11.39532 -11.15305 -11.09888 -10.88121 -10.72112 -10.68860 -10.60153 -10.49573 -10.32234 -10.15382 -9.95590 -9.64231 -9.49197 -8.47230 -8.03388 -6.64182 -5.76379 -3.18361 1.81521 2.64258 3.40006 3.42716 3.45612 3.47181 4.21411 4.42163 4.52127 4.54219 4.69586 4.92243 5.04700 5.21639 5.37841 5.39758 5.45106 5.46903 5.60152 5.62720 5.71073 5.72717 5.91439 5.94231 6.01612 6.17789 6.18947 6.25831 6.36305 6.52473 6.58450 6.66898 6.70269 6.85891 7.03967 7.36524 7.39514 7.61345 7.62556 7.69706 7.81701 8.47896 9.24177 9.88082 10.44802 11.32162 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025107 B = 0.003421 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.954673 B = 8183.710514 C = 8825.333829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.110 3.890 3 H 0.053 0.947 4 N -0.680 5.680 5 C 0.095 3.905 6 C -0.117 4.117 7 C 0.145 3.855 8 N -0.592 5.592 9 C -0.252 4.252 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.904 5.904 13 Si 0.902 3.098 14 H -0.283 1.283 15 H -0.291 1.291 16 H -0.284 1.284 17 C 0.176 3.824 18 C -0.168 4.168 19 C -0.110 4.110 20 H 0.120 0.880 21 C -0.140 4.140 22 C -0.171 4.171 23 H 0.136 0.864 24 C 0.509 3.491 25 O -0.514 6.514 26 O -0.514 6.514 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.339 0.661 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.016 0.984 35 H 0.054 0.946 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.015 0.985 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.099 0.901 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 -7.617 17.440 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.001 3.999 3 H 0.071 0.929 4 N -0.311 5.311 5 C -0.014 4.014 6 C -0.156 4.156 7 C 0.018 3.982 8 N -0.315 5.315 9 C -0.381 4.381 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.549 5.549 13 Si 0.732 3.268 14 H -0.209 1.209 15 H -0.217 1.217 16 H -0.211 1.211 17 C 0.049 3.951 18 C -0.209 4.209 19 C -0.128 4.128 20 H 0.138 0.862 21 C -0.177 4.177 22 C -0.190 4.190 23 H 0.154 0.846 24 C 0.352 3.648 25 O -0.402 6.402 26 O -0.326 6.326 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.033 0.967 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.118 0.882 43 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -8.818 -7.802 16.880 20.581 hybrid contribution 2.139 0.685 0.317 2.269 sum -6.679 -7.117 17.197 19.773 Atomic orbital electron populations 1.21949 0.94530 1.02314 1.01343 1.21014 0.95620 0.95839 0.87472 0.92905 1.60807 1.33377 1.33216 1.03676 1.21552 0.97166 0.92795 0.89874 1.21970 1.00684 0.98356 0.94627 1.20924 0.89728 0.92242 0.95311 1.44041 1.21766 1.53491 1.12233 1.19163 1.15194 0.98298 1.05484 0.91732 1.25039 1.00757 0.94666 0.99264 1.70026 1.38708 0.99670 1.46469 0.86370 0.83276 0.76624 0.80507 1.20882 1.21667 1.21070 1.20587 1.01634 0.90572 0.82309 1.22796 0.97349 1.00616 1.00119 1.22714 1.00592 1.00735 0.88792 0.86217 1.23291 1.00310 0.92925 1.01144 1.21813 1.02239 1.02222 0.92757 0.84579 1.22423 0.86471 0.73511 0.82416 1.90734 1.24737 1.41769 1.82987 1.84514 1.50462 1.75998 1.21596 0.92865 0.92166 0.91539 0.84218 0.91251 0.92611 0.92523 0.96646 0.92751 0.93658 0.89621 0.96656 0.93771 0.92575 0.86224 0.88221 0.73086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.00 37.16 0.30 -1.15 16 2 C 0.11 1.29 2.82 -67.71 -0.19 1.09 16 3 H 0.05 0.69 7.10 -51.93 -0.37 0.32 16 4 N -0.68 -9.28 6.06 -99.70 -0.60 -9.89 16 5 C 0.10 1.58 2.24 -67.67 -0.15 1.42 16 6 C -0.12 -2.05 5.69 -26.61 -0.15 -2.20 16 7 C 0.14 3.06 6.52 -3.71 -0.02 3.04 16 8 N -0.59 -14.97 3.00 -172.59 -0.52 -15.49 16 9 C -0.25 -6.99 9.58 -15.06 -0.14 -7.13 16 10 H 0.06 1.76 7.88 -52.49 -0.41 1.34 16 11 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 12 N -0.90 -26.48 11.18 55.49 0.62 -25.86 16 13 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 14 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 C 0.18 4.21 5.28 -3.93 -0.02 4.19 16 18 C -0.17 -3.20 5.30 -26.83 -0.14 -3.34 16 19 C -0.11 -1.14 5.33 -90.62 -0.48 -1.63 16 20 H 0.12 1.42 7.38 -51.93 -0.38 1.04 16 21 C -0.14 -1.16 9.27 -26.73 -0.25 -1.41 16 22 C -0.17 -1.57 5.67 -91.77 -0.52 -2.09 16 23 H 0.14 1.08 7.61 -51.93 -0.40 0.68 16 24 C 0.51 5.34 8.11 36.01 0.29 5.63 16 25 O -0.51 -7.07 17.02 -18.74 -0.32 -7.39 16 26 O -0.51 -4.04 13.42 -39.26 -0.53 -4.57 16 27 H 0.05 0.43 7.07 -51.93 -0.37 0.07 16 28 H 0.06 0.68 7.42 -51.93 -0.39 0.30 16 29 H 0.07 0.64 6.98 -51.93 -0.36 0.28 16 30 H 0.34 4.63 7.92 -39.29 -0.31 4.32 16 31 H 0.07 1.19 7.11 -51.93 -0.37 0.82 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 37 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.04 0.78 7.41 -51.93 -0.38 0.40 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.12 0.84 5.85 -51.93 -0.30 0.53 16 42 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 43 H 0.41 1.50 9.10 45.56 0.41 1.92 16 LS Contribution 340.29 15.07 5.13 5.13 Total: -1.00 -31.85 340.29 -8.85 -40.70 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -6.03 Total: 4.11 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.57 Total: -3.63 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.50 Total: -51.23 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.85 Total: -11.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.85 -8.85 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593219688.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.146 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds