Wall clock time and date at job start Tue Mar 31 2020 05:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.78541 * 2 1 4 4 C 1.53695 * 109.80026 * 239.32132 * 2 1 3 5 5 N 1.46896 * 109.25592 * 294.41647 * 4 2 1 6 6 C 1.46900 * 111.00277 * 172.60508 * 5 4 2 7 7 C 1.53001 * 109.47209 * 309.24914 * 6 5 4 8 8 C 1.50705 * 115.54778 * 306.26984 * 7 6 5 9 9 O 1.20821 * 120.00136 * 122.48368 * 8 7 6 10 10 O 1.34229 * 119.99873 * 302.47821 * 8 7 6 11 11 C 1.53005 * 117.50023 * 160.59816 * 7 6 5 12 12 C 1.52998 * 117.49785 * 91.93782 * 7 6 5 13 13 C 1.46899 * 111.27008 * 296.75696 * 5 4 2 14 14 C 1.53245 * 109.33966 * 63.10460 * 13 5 4 15 15 H 1.09000 * 109.62813 * 65.87990 * 14 13 5 16 16 C 1.52996 * 109.78666 * 186.36744 * 14 13 5 17 17 N 1.47076 * 108.51693 * 306.16998 * 14 13 5 18 18 C 1.36937 * 120.87953 * 231.18491 * 17 14 13 19 19 H 1.08006 * 119.99842 * 25.07692 * 18 17 14 20 20 C 1.38812 * 119.99967 * 205.07485 * 18 17 14 21 21 N 1.31617 * 120.00437 * 19.53588 * 20 18 17 22 22 Si 1.86806 * 119.99754 * 199.54071 * 20 18 17 23 23 H 1.48502 * 109.46907 * 269.99987 * 22 20 18 24 24 H 1.48497 * 109.47386 * 29.99994 * 22 20 18 25 25 H 1.48497 * 109.47086 * 150.00209 * 22 20 18 26 26 H 1.09002 * 109.46985 * 299.51310 * 1 2 3 27 27 H 1.08995 * 109.47144 * 59.51614 * 1 2 3 28 28 H 1.08996 * 109.46601 * 179.51269 * 1 2 3 29 29 H 1.08998 * 109.65090 * 174.41704 * 4 2 1 30 30 H 1.08999 * 109.42294 * 54.28204 * 4 2 1 31 31 H 1.09000 * 109.46592 * 69.24722 * 6 5 4 32 32 H 1.09005 * 109.47286 * 189.24976 * 6 5 4 33 33 H 0.96698 * 116.99590 * 185.07209 * 10 8 7 34 34 H 1.08995 * 117.49614 * 359.97438 * 11 7 6 35 35 H 1.08993 * 117.49462 * 145.01987 * 11 7 6 36 36 H 1.09007 * 117.49829 * 214.97674 * 12 7 6 37 37 H 1.09002 * 117.50080 * 359.97284 * 12 7 6 38 38 H 1.09001 * 109.49161 * 303.14412 * 13 5 4 39 39 H 1.09004 * 109.49465 * 183.06308 * 13 5 4 40 40 H 1.09002 * 109.46920 * 179.12585 * 16 14 13 41 41 H 1.09008 * 109.47155 * 299.12114 * 16 14 13 42 42 H 1.08994 * 109.47240 * 59.12598 * 16 14 13 43 43 H 0.96994 * 120.00100 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0506 -0.7378 -1.2437 5 7 1.6754 -2.1555 -1.1584 6 6 1.9990 -2.8617 -2.4052 7 6 1.4248 -2.0877 -3.5936 8 6 -0.0472 -1.7743 -3.5150 9 8 -0.4248 -0.6281 -3.5742 10 8 -0.9388 -2.7684 -3.3792 11 6 2.0125 -2.3779 -4.9761 12 6 2.3313 -1.0576 -4.2702 13 6 2.3103 -2.8063 -0.0047 14 6 1.8057 -2.1542 1.2871 15 1 0.7417 -2.3574 1.4084 16 6 2.5757 -2.7139 2.4848 17 7 2.0241 -0.7028 1.1938 18 6 2.6655 -0.0228 2.1945 19 1 3.3567 -0.5411 2.8426 20 6 2.4271 1.3326 2.3760 21 7 1.3413 1.8827 1.8755 22 14 3.6477 2.3759 3.3306 23 1 3.2825 2.3724 4.7700 24 1 5.0132 1.8163 3.1651 25 1 3.6177 3.7684 2.8158 26 1 -0.3633 0.5063 0.8943 27 1 -0.3633 0.5213 -0.8856 28 1 -0.3632 -1.0276 -0.0087 29 1 3.1360 -0.6513 -1.2936 30 1 1.6088 -0.2978 -2.1377 31 1 3.0814 -2.9371 -2.5095 32 1 1.5658 -3.8617 -2.3794 33 1 -1.8744 -2.5261 -3.4090 34 1 2.8085 -3.1199 -5.0390 35 1 1.3345 -2.3417 -5.8288 36 1 1.8630 -0.1533 -4.6590 37 1 3.3367 -0.9309 -3.8685 38 1 3.3921 -2.6910 -0.0719 39 1 2.0568 -3.8665 0.0000 40 1 2.2236 -2.2356 3.3988 41 1 2.4120 -3.7896 2.5515 42 1 3.6398 -2.5155 2.3576 43 1 1.1746 2.8298 2.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604788055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:11 Heat of formation + Delta-G solvation = -27.472245 kcal Electronic energy + Delta-G solvation = -24359.998351 eV Core-core repulsion = 21021.139856 eV Total energy + Delta-G solvation = -3338.858496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.50317 -38.54426 -37.06427 -35.78593 -34.19967 -32.45119 -31.15141 -28.10388 -27.00640 -25.95015 -24.71575 -23.72756 -22.62100 -21.95543 -20.70202 -19.61058 -18.49013 -17.64787 -16.76323 -15.99488 -15.71484 -15.20736 -14.51487 -14.40090 -14.25509 -14.10078 -13.73648 -13.39071 -13.17560 -12.88409 -12.18665 -12.14798 -11.76268 -11.68690 -11.45845 -11.35791 -11.17893 -11.05190 -10.88659 -10.69729 -10.63143 -10.40938 -10.36870 -10.19100 -10.09094 -9.94789 -9.83224 -9.33738 -9.09744 -8.38650 -7.73829 -6.57192 -5.68675 -3.06895 2.38637 3.09106 3.41388 3.49234 3.50667 3.54604 4.25746 4.55717 4.62363 4.75093 4.86726 5.28426 5.38706 5.42633 5.44868 5.52448 5.69060 5.76969 5.89100 5.91227 5.97436 5.98592 6.16134 6.20946 6.30638 6.36035 6.43333 6.49473 6.69426 6.75079 6.94260 7.01309 7.10274 7.24803 7.32197 7.58887 7.62842 7.81067 7.93209 8.03850 8.12625 8.52919 9.31832 9.95606 10.53323 11.38763 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.005767 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.042269 B = 4854.034894 C = 5192.222260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.200 3.800 3 H 0.094 0.906 4 C 0.035 3.965 5 N -0.530 5.530 6 C 0.096 3.904 7 C -0.127 4.127 8 C 0.532 3.468 9 O -0.507 6.507 10 O -0.510 6.510 11 C -0.152 4.152 12 C -0.144 4.144 13 C 0.051 3.949 14 C 0.171 3.829 15 H 0.032 0.968 16 C -0.137 4.137 17 N -0.586 5.586 18 C -0.248 4.248 19 H 0.071 0.929 20 C 0.000 4.000 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.289 1.289 24 H -0.282 1.282 25 H -0.291 1.291 26 H 0.069 0.931 27 H 0.023 0.977 28 H 0.029 0.971 29 H 0.021 0.979 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.407 0.593 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.028 0.972 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.051 0.949 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -10.467 -11.960 15.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.093 3.907 3 H 0.112 0.888 4 C -0.094 4.094 5 N -0.254 5.254 6 C -0.032 4.032 7 C -0.128 4.128 8 C 0.373 3.627 9 O -0.394 6.394 10 O -0.321 6.321 11 C -0.190 4.190 12 C -0.181 4.181 13 C -0.078 4.078 14 C 0.064 3.936 15 H 0.049 0.951 16 C -0.195 4.195 17 N -0.309 5.309 18 C -0.378 4.378 19 H 0.088 0.912 20 C -0.198 4.198 21 N -0.541 5.541 22 Si 0.725 3.275 23 H -0.216 1.216 24 H -0.208 1.208 25 H -0.217 1.217 26 H 0.088 0.912 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.126 0.874 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.147 -10.097 -11.834 15.557 hybrid contribution 0.767 0.830 0.398 1.198 sum 0.913 -9.267 -11.435 14.747 Atomic orbital electron populations 1.21896 0.97965 0.98758 1.00434 1.20479 0.92508 0.95710 0.81990 0.88846 1.23088 0.97224 0.87462 1.01608 1.61994 1.59106 1.03243 1.01086 1.21600 0.97191 0.96859 0.87574 1.20889 0.88489 1.06767 0.96664 1.21776 0.87648 0.82406 0.70823 1.90721 1.80685 1.22204 1.45808 1.84482 1.21168 1.41615 1.84794 1.23155 1.02833 1.00204 0.92815 1.23228 0.99986 0.93810 1.01056 1.22641 0.96004 0.97038 0.92144 1.20434 0.96428 0.85982 0.90717 0.95069 1.21798 1.00444 0.97967 0.99290 1.44359 1.66842 1.01113 1.18573 1.19179 1.17004 0.91644 1.09949 0.91183 1.24943 0.96618 0.98477 0.99774 1.70046 1.23516 1.11461 1.49062 0.86412 0.81452 0.80048 0.79552 1.21642 1.20791 1.21724 0.91174 0.95823 0.95227 0.96099 0.91010 0.94306 0.90010 0.73521 0.87436 0.88200 0.87364 0.87370 0.95357 0.92192 0.91828 0.94273 0.92990 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.98 37.16 0.33 -2.87 16 2 C 0.20 4.86 2.37 -67.26 -0.16 4.70 16 3 H 0.09 2.59 6.06 -51.93 -0.31 2.28 16 4 C 0.03 0.71 4.31 -3.47 -0.01 0.69 16 5 N -0.53 -9.53 3.91 -234.02 -0.91 -10.44 16 6 C 0.10 1.36 5.06 -3.82 -0.02 1.35 16 7 C -0.13 -1.69 1.30 -155.66 -0.20 -1.90 16 8 C 0.53 8.11 6.87 36.01 0.25 8.35 16 9 O -0.51 -9.26 16.70 -18.75 -0.31 -9.57 16 10 O -0.51 -6.50 13.42 -39.25 -0.53 -7.02 16 11 C -0.15 -1.50 9.96 -26.69 -0.27 -1.76 16 12 C -0.14 -1.74 7.98 -26.69 -0.21 -1.95 16 13 C 0.05 0.93 4.91 -3.70 -0.02 0.91 16 14 C 0.17 3.63 3.24 -67.49 -0.22 3.41 16 15 H 0.03 0.72 7.61 -51.93 -0.40 0.32 16 16 C -0.14 -2.58 7.94 37.16 0.29 -2.29 16 17 N -0.59 -14.56 2.73 -156.74 -0.43 -14.98 16 18 C -0.25 -6.69 8.74 -15.06 -0.13 -6.82 16 19 H 0.07 1.84 6.14 -52.48 -0.32 1.52 16 20 C 0.00 0.00 4.89 -17.43 -0.09 -0.08 16 21 N -0.90 -25.78 9.89 55.49 0.55 -25.23 16 22 Si 0.90 21.77 29.60 -169.99 -5.03 16.74 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H 0.07 1.91 6.97 -51.93 -0.36 1.54 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.69 7.06 -51.93 -0.37 0.33 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.43 4.71 -51.93 -0.24 1.19 16 31 H 0.04 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.41 3.52 9.10 45.56 0.41 3.93 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 1.38 7.86 -51.92 -0.41 0.97 16 37 H 0.11 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.95 8.11 -51.93 -0.42 0.52 16 40 H 0.06 1.29 7.50 -51.93 -0.39 0.90 16 41 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.05 0.99 7.60 -51.93 -0.39 0.59 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 334.38 15.07 5.04 5.04 Total: -1.00 -31.55 334.38 -8.22 -39.77 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.14 Total: 3.95 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.45 Total: 1.75 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.79 Total: -50.65 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.84 Total: -16.60 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.55 -8.22 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604788055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.300 kcal (2) G-P(sol) polarization free energy of solvation -31.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds