Wall clock time and date at job start Tue Mar 31 2020 05:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.78541 * 2 1 4 4 C 1.53695 * 109.80026 * 239.32132 * 2 1 3 5 5 N 1.46896 * 109.25592 * 294.41647 * 4 2 1 6 6 C 1.46900 * 111.00277 * 172.60508 * 5 4 2 7 7 C 1.53001 * 109.47209 * 309.24914 * 6 5 4 8 8 C 1.50705 * 115.54778 * 306.26984 * 7 6 5 9 9 O 1.20821 * 120.00136 * 122.48368 * 8 7 6 10 10 O 1.34229 * 119.99873 * 302.47821 * 8 7 6 11 11 C 1.53005 * 117.50023 * 160.59816 * 7 6 5 12 12 C 1.52998 * 117.49785 * 91.93782 * 7 6 5 13 13 C 1.46899 * 111.27008 * 296.75696 * 5 4 2 14 14 C 1.53245 * 109.33966 * 63.10460 * 13 5 4 15 15 H 1.09000 * 109.62813 * 65.87990 * 14 13 5 16 16 C 1.52996 * 109.78666 * 186.36744 * 14 13 5 17 17 N 1.47076 * 108.51693 * 306.16998 * 14 13 5 18 18 C 1.36937 * 120.87953 * 231.18491 * 17 14 13 19 19 H 1.08006 * 119.99842 * 25.07692 * 18 17 14 20 20 C 1.38812 * 119.99967 * 205.07485 * 18 17 14 21 21 N 1.31617 * 120.00437 * 19.53588 * 20 18 17 22 22 Si 1.86806 * 119.99754 * 199.54071 * 20 18 17 23 23 H 1.48502 * 109.46907 * 269.99987 * 22 20 18 24 24 H 1.48497 * 109.47386 * 29.99994 * 22 20 18 25 25 H 1.48497 * 109.47086 * 150.00209 * 22 20 18 26 26 H 1.09002 * 109.46985 * 299.51310 * 1 2 3 27 27 H 1.08995 * 109.47144 * 59.51614 * 1 2 3 28 28 H 1.08996 * 109.46601 * 179.51269 * 1 2 3 29 29 H 1.08998 * 109.65090 * 174.41704 * 4 2 1 30 30 H 1.08999 * 109.42294 * 54.28204 * 4 2 1 31 31 H 1.09000 * 109.46592 * 69.24722 * 6 5 4 32 32 H 1.09005 * 109.47286 * 189.24976 * 6 5 4 33 33 H 0.96698 * 116.99590 * 185.07209 * 10 8 7 34 34 H 1.08995 * 117.49614 * 359.97438 * 11 7 6 35 35 H 1.08993 * 117.49462 * 145.01987 * 11 7 6 36 36 H 1.09007 * 117.49829 * 214.97674 * 12 7 6 37 37 H 1.09002 * 117.50080 * 359.97284 * 12 7 6 38 38 H 1.09001 * 109.49161 * 303.14412 * 13 5 4 39 39 H 1.09004 * 109.49465 * 183.06308 * 13 5 4 40 40 H 1.09002 * 109.46920 * 179.12585 * 16 14 13 41 41 H 1.09008 * 109.47155 * 299.12114 * 16 14 13 42 42 H 1.08994 * 109.47240 * 59.12598 * 16 14 13 43 43 H 0.96994 * 120.00100 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0257 0.0000 4 6 2.0506 -0.7378 -1.2437 5 7 1.6754 -2.1555 -1.1584 6 6 1.9990 -2.8617 -2.4052 7 6 1.4248 -2.0877 -3.5936 8 6 -0.0472 -1.7743 -3.5150 9 8 -0.4248 -0.6281 -3.5742 10 8 -0.9388 -2.7684 -3.3792 11 6 2.0125 -2.3779 -4.9761 12 6 2.3313 -1.0576 -4.2702 13 6 2.3103 -2.8063 -0.0047 14 6 1.8057 -2.1542 1.2871 15 1 0.7417 -2.3574 1.4084 16 6 2.5757 -2.7139 2.4848 17 7 2.0241 -0.7028 1.1938 18 6 2.6655 -0.0228 2.1945 19 1 3.3567 -0.5411 2.8426 20 6 2.4271 1.3326 2.3760 21 7 1.3413 1.8827 1.8755 22 14 3.6477 2.3759 3.3306 23 1 3.2825 2.3724 4.7700 24 1 5.0132 1.8163 3.1651 25 1 3.6177 3.7684 2.8158 26 1 -0.3633 0.5063 0.8943 27 1 -0.3633 0.5213 -0.8856 28 1 -0.3632 -1.0276 -0.0087 29 1 3.1360 -0.6513 -1.2936 30 1 1.6088 -0.2978 -2.1377 31 1 3.0814 -2.9371 -2.5095 32 1 1.5658 -3.8617 -2.3794 33 1 -1.8744 -2.5261 -3.4090 34 1 2.8085 -3.1199 -5.0390 35 1 1.3345 -2.3417 -5.8288 36 1 1.8630 -0.1533 -4.6590 37 1 3.3367 -0.9309 -3.8685 38 1 3.3921 -2.6910 -0.0719 39 1 2.0568 -3.8665 0.0000 40 1 2.2236 -2.2356 3.3988 41 1 2.4120 -3.7896 2.5515 42 1 3.6398 -2.5155 2.3576 43 1 1.1746 2.8298 2.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604788055.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:10 Heat of formation + Delta-G solvation = -48.556730 kcal Electronic energy + Delta-G solvation = -24360.912643 eV Core-core repulsion = 21021.139856 eV Total energy + Delta-G solvation = -3339.772787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.63436 -40.03743 -38.25304 -36.94772 -35.77134 -34.18785 -33.07896 -29.86352 -28.41163 -27.57412 -26.21473 -25.34565 -23.57423 -23.44448 -22.33778 -20.69468 -20.33303 -18.78273 -18.14794 -17.55921 -17.15907 -16.74028 -16.02540 -15.79109 -15.67401 -15.55906 -15.22647 -14.93394 -14.70093 -14.45578 -13.65378 -13.49006 -13.29636 -13.20569 -12.89846 -12.75460 -12.69834 -12.51042 -12.46317 -12.35957 -12.25811 -12.19925 -11.89154 -11.72855 -11.64661 -11.38120 -11.27107 -10.99582 -10.88938 -10.44389 -9.18414 -8.56150 -7.77094 -5.17028 1.27130 1.46243 1.48674 1.56953 2.12785 2.55075 2.59573 3.07245 3.36180 3.59537 3.64124 3.74578 3.93633 4.26808 4.31857 4.35927 4.45169 4.51890 4.62730 4.67681 4.68659 4.78034 4.81743 4.89042 4.90290 4.92178 4.95320 5.02359 5.05809 5.14390 5.22542 5.31590 5.44859 5.55520 5.69215 5.69671 5.75432 5.94514 6.22801 6.31774 6.47876 7.09065 7.24479 7.97207 8.50156 9.28238 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021886 B = 0.005767 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.042269 B = 4854.034894 C = 5192.222260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.197 3.803 3 H 0.052 0.948 4 C 0.058 3.942 5 N -0.542 5.542 6 C 0.100 3.900 7 C -0.153 4.153 8 C 0.530 3.470 9 O -0.549 6.549 10 O -0.505 6.505 11 C -0.113 4.113 12 C -0.157 4.157 13 C 0.060 3.940 14 C 0.161 3.839 15 H 0.013 0.987 16 C -0.127 4.127 17 N -0.600 5.600 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.055 4.055 21 N -0.926 5.926 22 Si 0.956 3.044 23 H -0.289 1.289 24 H -0.273 1.273 25 H -0.299 1.299 26 H 0.034 0.966 27 H 0.020 0.980 28 H 0.033 0.967 29 H 0.015 0.985 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.422 0.578 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.028 0.972 39 H 0.094 0.906 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.734 -13.249 -13.162 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.090 3.910 3 H 0.071 0.929 4 C -0.072 4.072 5 N -0.266 5.266 6 C -0.027 4.027 7 C -0.154 4.154 8 C 0.373 3.627 9 O -0.440 6.440 10 O -0.317 6.317 11 C -0.150 4.150 12 C -0.194 4.194 13 C -0.068 4.068 14 C 0.055 3.945 15 H 0.030 0.970 16 C -0.185 4.185 17 N -0.324 5.324 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.250 4.250 21 N -0.572 5.572 22 Si 0.786 3.214 23 H -0.216 1.216 24 H -0.198 1.198 25 H -0.225 1.225 26 H 0.053 0.947 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.283 0.717 34 H 0.155 0.845 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.046 0.954 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.507 -12.939 -13.042 18.433 hybrid contribution 0.259 1.606 0.756 1.794 sum 1.766 -11.333 -12.286 16.808 Atomic orbital electron populations 1.21617 0.98407 0.98160 0.98404 1.20326 0.92003 0.94536 0.84088 0.92947 1.22643 0.96385 0.89038 0.99096 1.61907 1.59524 1.02056 1.03111 1.21668 0.98486 0.97021 0.85558 1.20984 0.87387 1.08408 0.98621 1.22238 0.88745 0.82022 0.69649 1.90709 1.81526 1.23865 1.47891 1.84447 1.22345 1.40833 1.84105 1.23312 1.02399 0.98609 0.90672 1.23237 0.99701 0.94400 1.02032 1.22498 0.95715 0.98295 0.90342 1.20685 0.95933 0.84075 0.93757 0.96969 1.21697 0.99655 1.00066 0.97095 1.44593 1.66764 1.02780 1.18240 1.19506 1.16636 0.91960 1.09841 0.90659 1.25642 0.98094 0.99725 1.01503 1.70223 1.25127 1.10951 1.50949 0.85445 0.79836 0.78046 0.78118 1.21579 1.19807 1.22542 0.94683 0.96133 0.94824 0.96690 0.90859 0.92474 0.88201 0.71711 0.84534 0.87008 0.88841 0.86996 0.95386 0.88787 0.94074 0.90403 0.93179 0.94749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.38 8.98 71.98 0.65 -4.74 16 2 C 0.20 9.85 2.37 45.11 0.11 9.96 16 3 H 0.05 3.05 6.06 -2.39 -0.01 3.03 16 4 C 0.06 2.32 4.31 86.54 0.37 2.69 16 5 N -0.54 -18.29 3.91 -894.30 -3.49 -21.78 16 6 C 0.10 2.47 5.06 86.30 0.44 2.91 16 7 C -0.15 -3.68 1.30 -52.92 -0.07 -3.74 16 8 C 0.53 15.39 6.87 71.24 0.49 15.88 16 9 O -0.55 -20.12 16.70 21.98 0.37 -19.76 16 10 O -0.50 -11.83 13.42 -51.40 -0.69 -12.52 16 11 C -0.11 -1.77 9.96 30.62 0.30 -1.46 16 12 C -0.16 -3.49 7.98 30.62 0.24 -3.24 16 13 C 0.06 2.01 4.91 86.39 0.42 2.44 16 14 C 0.16 6.65 3.24 44.96 0.15 6.79 16 15 H 0.01 0.56 7.61 -2.39 -0.02 0.55 16 16 C -0.13 -4.56 7.94 71.98 0.57 -3.99 16 17 N -0.60 -30.12 2.73 -649.80 -1.78 -31.90 16 18 C -0.25 -13.58 8.74 84.03 0.73 -12.85 16 19 H 0.08 3.95 6.14 -2.91 -0.02 3.93 16 20 C -0.05 -3.08 4.89 84.86 0.41 -2.67 16 21 N -0.93 -55.54 9.89 21.65 0.21 -55.33 16 22 Si 0.96 45.80 29.60 68.60 2.03 47.83 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 26 H 0.03 1.98 6.97 -2.39 -0.02 1.96 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.03 1.61 7.06 -2.39 -0.02 1.59 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 2.93 4.71 -2.39 -0.01 2.92 16 31 H 0.06 1.25 8.07 -2.39 -0.02 1.23 16 32 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.42 6.67 9.10 -74.06 -0.67 6.00 16 34 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 2.35 7.86 -2.38 -0.02 2.33 16 37 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 2.52 8.11 -2.38 -0.02 2.50 16 40 H 0.04 1.63 7.50 -2.39 -0.02 1.61 16 41 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.05 1.80 7.60 -2.39 -0.02 1.78 16 43 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -70.82 334.38 1.81 -69.01 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.33 Total: 16.46 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 4.82 Total: 7.98 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -5.06 Total: -109.01 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.32 Total: -32.28 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -70.82 1.81 -69.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604788055.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.455 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds