Wall clock time and date at job start Tue Mar 31 2020 05:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.46998 * 2 1 4 4 C 1.53006 * 109.46808 * 120.00002 * 2 1 3 5 5 C 1.50696 * 109.46955 * 294.99616 * 4 2 1 6 6 H 1.07998 * 120.00436 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99775 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99780 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99876 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46744 * 90.00669 * 9 7 5 11 11 H 1.48504 * 109.46933 * 210.00222 * 9 7 5 12 12 H 1.48499 * 109.47314 * 330.00604 * 9 7 5 13 13 C 1.52997 * 109.46878 * 239.99677 * 2 1 3 14 14 N 1.46898 * 109.47075 * 63.18889 * 13 2 1 15 15 C 1.46683 * 111.00114 * 196.01107 * 14 13 2 16 16 C 1.53314 * 110.11691 * 175.35724 * 15 14 13 17 17 C 1.52365 * 108.67675 * 58.37912 * 16 15 14 18 18 H 1.08998 * 109.16227 * 60.00205 * 17 16 15 19 19 O 1.42635 * 111.92311 * 181.23662 * 17 16 15 20 20 C 1.43188 * 112.45945 * 188.22229 * 19 17 16 21 21 C 1.50205 * 110.73928 * 314.02582 * 20 19 17 22 22 O 1.21283 * 118.52679 * 193.08334 * 21 20 19 23 23 N 1.34263 * 122.94235 * 13.09104 * 21 20 19 24 24 C 1.45644 * 121.13796 * 356.38580 * 23 21 20 25 25 H 1.09005 * 108.48702 * 265.01700 * 24 23 21 26 26 C 1.47147 * 110.99997 * 70.79278 * 14 13 2 27 27 H 1.08996 * 109.46975 * 65.50736 * 1 2 3 28 28 H 1.09007 * 109.47362 * 185.50598 * 1 2 3 29 29 H 1.09000 * 109.47236 * 305.50759 * 1 2 3 30 30 H 1.08993 * 109.46889 * 55.00071 * 4 2 1 31 31 H 1.09002 * 109.46641 * 175.00178 * 4 2 1 32 32 H 0.97002 * 120.00014 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47654 * 303.18453 * 13 2 1 34 34 H 1.09002 * 109.47140 * 183.18495 * 13 2 1 35 35 H 1.09005 * 109.34178 * 295.51538 * 15 14 13 36 36 H 1.08999 * 109.34088 * 55.19747 * 15 14 13 37 37 H 1.09008 * 109.63028 * 177.93636 * 16 15 14 38 38 H 1.08998 * 109.63273 * 298.51947 * 16 15 14 39 39 H 1.09000 * 109.22401 * 74.35826 * 20 19 17 40 40 H 1.09005 * 109.21676 * 193.74669 * 20 19 17 41 41 H 0.97010 * 119.43162 * 176.41307 * 23 21 20 42 42 H 1.08991 * 109.59457 * 305.20897 * 26 14 13 43 43 H 1.08996 * 109.59617 * 65.51715 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9923 -0.4022 3.7284 8 7 2.6753 -1.5193 3.8512 9 14 1.4975 0.5622 5.2497 10 1 0.1701 0.0937 5.7227 11 1 2.5065 0.3519 6.3189 12 1 1.4227 2.0075 4.9170 13 6 2.0399 -0.7213 -1.2492 14 7 1.6142 0.0142 -2.4474 15 6 1.7442 -0.8176 -3.6486 16 6 1.1877 -0.0733 -4.8680 17 6 1.9492 1.2364 -5.0297 18 1 3.0073 1.0193 -5.1759 19 8 1.4660 2.0008 -6.1327 20 6 2.2889 3.1388 -6.4119 21 6 2.6269 3.8742 -5.1465 22 8 3.1092 4.9836 -5.2325 23 7 2.4190 3.3582 -3.9245 24 6 1.7720 2.0647 -3.7532 25 1 0.7080 2.2301 -3.5835 26 6 2.3469 1.2839 -2.5749 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3634 -1.0230 0.0986 29 1 -0.3634 0.5969 0.8366 30 1 1.6053 -1.7198 1.2952 31 1 3.1263 -0.7995 1.2056 32 1 2.9226 -1.8423 4.7318 33 1 1.6308 -1.7312 -1.2782 34 1 3.1285 -0.7711 -1.2211 35 1 2.7963 -1.0484 -3.8157 36 1 1.1891 -1.7449 -3.5074 37 1 1.3214 -0.6831 -5.7616 38 1 0.1282 0.1343 -4.7182 39 1 3.2099 2.8069 -6.8911 40 1 1.7560 3.8104 -7.0851 41 1 2.7043 3.8558 -3.1421 42 1 2.2323 1.8654 -1.6602 43 1 3.4034 1.0804 -2.7488 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001659389061.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:58 Heat of formation + Delta-G solvation = -86.814893 kcal Electronic energy + Delta-G solvation = -22963.070889 eV Core-core repulsion = 19621.639103 eV Total energy + Delta-G solvation = -3341.431786 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17006 -38.96736 -37.63762 -35.51085 -34.60689 -32.65186 -31.29987 -29.91429 -28.04851 -26.89607 -25.84981 -23.96809 -23.44573 -22.42863 -20.57720 -20.08708 -18.91653 -18.00641 -17.46807 -16.36906 -16.08727 -15.66203 -15.52952 -15.22193 -14.90632 -14.68136 -14.40091 -14.20919 -13.66628 -13.57052 -12.97132 -12.67918 -12.49136 -12.29189 -11.93521 -11.77436 -11.50884 -11.43070 -11.20661 -10.98096 -10.86539 -10.79144 -10.69610 -10.33665 -10.33165 -9.79482 -9.67569 -9.33623 -9.18223 -9.01595 -8.36219 -8.23691 -6.01198 -4.02429 2.19391 2.75283 3.19709 3.30869 3.37517 3.40448 3.81029 4.09280 4.28613 4.45695 4.52682 4.64603 4.79291 4.85274 4.97774 5.05534 5.16507 5.33191 5.34647 5.38277 5.50093 5.66477 5.72168 5.72841 5.82185 5.97057 6.07076 6.28755 6.31198 6.44192 6.61235 6.62040 6.91138 6.93050 7.01754 7.12072 7.21547 7.26952 7.64310 7.79594 7.80768 7.98571 8.42406 9.03963 9.61414 11.10297 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025355 B = 0.003591 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.065010 B = 7794.542992 C = 8518.826814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.080 4.080 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.063 3.937 14 N -0.535 5.535 15 C 0.056 3.944 16 C -0.104 4.104 17 C 0.075 3.925 18 H 0.065 0.935 19 O -0.363 6.363 20 C 0.050 3.950 21 C 0.491 3.509 22 O -0.548 6.548 23 N -0.712 5.712 24 C 0.110 3.890 25 H 0.094 0.906 26 C 0.051 3.949 27 H 0.044 0.956 28 H 0.040 0.960 29 H 0.050 0.950 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.260 0.740 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.131 0.869 41 H 0.405 0.595 42 H 0.094 0.906 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 2.924 -19.971 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.099 4.099 3 H 0.072 0.928 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.063 4.063 14 N -0.260 5.260 15 C -0.072 4.072 16 C -0.142 4.142 17 C 0.016 3.984 18 H 0.083 0.917 19 O -0.282 6.282 20 C -0.030 4.030 21 C 0.278 3.722 22 O -0.426 6.426 23 N -0.366 5.366 24 C 0.005 3.995 25 H 0.112 0.888 26 C -0.078 4.078 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.035 0.965 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.149 0.851 41 H 0.243 0.757 42 H 0.112 0.888 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.863 3.326 -20.125 20.483 hybrid contribution 1.035 0.474 1.416 1.817 sum -0.828 3.800 -18.709 19.108 Atomic orbital electron populations 1.21579 0.95613 1.00805 1.00013 1.21222 0.96097 0.98934 0.93668 0.92763 1.19132 0.95881 0.95584 0.90446 1.21217 1.34642 1.08319 0.90953 0.92598 1.25013 0.95286 0.95085 0.99105 1.69959 1.39037 1.21252 1.23413 0.86640 0.78258 0.80437 0.82949 1.20688 1.21317 1.19913 1.22326 0.97629 0.97464 0.88924 1.61662 1.57027 1.04233 1.03028 1.22103 0.99349 0.96604 0.89134 1.21483 1.01408 0.93010 0.98304 1.22363 0.98738 0.92303 0.84963 0.91739 1.88136 1.51150 1.38407 1.50502 1.22786 0.97772 0.88093 0.94306 1.21072 0.78064 0.86853 0.86249 1.90788 1.44978 1.19747 1.87104 1.45726 1.61391 1.21040 1.08413 1.21618 0.98786 0.82849 0.96277 0.88827 1.22227 0.95432 0.92163 0.98000 0.93675 0.94060 0.93044 0.96536 0.96994 0.93076 0.90777 0.94937 0.94829 0.89369 0.89962 0.89472 0.89091 0.85142 0.75727 0.88756 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.85 37.16 0.33 -1.89 16 2 C -0.08 -1.51 2.32 -90.62 -0.21 -1.72 16 3 H 0.05 1.04 6.51 -51.93 -0.34 0.70 16 4 C 0.03 0.66 4.45 -27.88 -0.12 0.54 16 5 C -0.51 -13.96 8.48 -34.44 -0.29 -14.26 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.06 0.96 4.39 -3.83 -0.02 0.95 16 14 N -0.53 -6.56 3.86 -234.66 -0.91 -7.47 16 15 C 0.06 0.55 5.44 -3.78 -0.02 0.53 16 16 C -0.10 -0.88 5.85 -26.89 -0.16 -1.04 16 17 C 0.07 0.70 2.44 -26.96 -0.07 0.63 16 18 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 19 O -0.36 -3.55 10.63 -35.23 -0.37 -3.93 16 20 C 0.05 0.44 6.94 35.77 0.25 0.68 16 21 C 0.49 5.73 7.80 -11.45 -0.09 5.64 16 22 O -0.55 -8.33 17.84 5.56 0.10 -8.23 16 23 N -0.71 -7.64 5.36 -54.75 -0.29 -7.94 16 24 C 0.11 1.14 3.09 -68.50 -0.21 0.93 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 26 C 0.05 0.58 5.04 -3.89 -0.02 0.56 16 27 H 0.04 0.72 7.54 -51.93 -0.39 0.32 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 1.00 7.12 -51.93 -0.37 0.63 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.07 1.12 7.88 -51.93 -0.41 0.71 16 34 H 0.03 0.51 8.07 -51.93 -0.42 0.09 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.82 7.97 -51.93 -0.41 0.40 16 37 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.41 4.20 8.81 -40.82 -0.36 3.84 16 42 H 0.09 1.19 6.43 -51.93 -0.33 0.86 16 43 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -31.26 337.57 -8.59 -39.84 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.19 Total: -1.02 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.73 Total: -6.97 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.46 Total: -41.15 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.28 Total: -12.15 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.26 -8.59 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001659389061.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.971 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds