Wall clock time and date at job start Tue Mar 31 2020 05:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47176 * 2 1 4 4 C 1.53000 * 109.47332 * 240.00247 * 2 1 3 5 5 C 1.50695 * 109.47015 * 64.99679 * 4 2 1 6 6 H 1.07998 * 120.00334 * 0.02562 * 5 4 2 7 7 C 1.37889 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99653 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00021 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46992 * 60.00347 * 9 7 5 11 11 H 1.48494 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47258 * 300.00521 * 9 7 5 13 13 C 1.53000 * 109.47203 * 119.99736 * 2 1 3 14 14 N 1.46897 * 109.47162 * 292.90642 * 13 2 1 15 15 C 1.46652 * 111.00051 * 82.12694 * 14 13 2 16 16 C 1.53347 * 110.39500 * 175.51039 * 15 14 13 17 17 C 1.52677 * 108.35255 * 58.18713 * 16 15 14 18 18 H 1.09002 * 109.47193 * 60.03366 * 17 16 15 19 19 C 1.52856 * 111.88300 * 181.56990 * 17 16 15 20 20 O 1.45694 * 107.56392 * 181.16088 * 19 17 16 21 21 C 1.34084 * 118.24500 * 317.57487 * 20 19 17 22 22 O 1.21505 * 118.13812 * 193.57295 * 21 20 19 23 23 N 1.34247 * 123.72279 * 13.59778 * 21 20 19 24 24 C 1.45497 * 121.32148 * 355.61337 * 23 21 20 25 25 H 1.09006 * 108.83566 * 266.66939 * 24 23 21 26 26 C 1.47185 * 111.00121 * 316.72351 * 14 13 2 27 27 H 1.08996 * 109.46432 * 204.75258 * 1 2 3 28 28 H 1.08998 * 109.47390 * 324.75391 * 1 2 3 29 29 H 1.09001 * 109.46755 * 84.76086 * 1 2 3 30 30 H 1.08999 * 109.47224 * 184.99821 * 4 2 1 31 31 H 1.08999 * 109.46961 * 304.99770 * 4 2 1 32 32 H 0.96994 * 119.99496 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47115 * 172.90213 * 13 2 1 34 34 H 1.08999 * 109.46617 * 52.90716 * 13 2 1 35 35 H 1.09006 * 109.31246 * 295.79309 * 15 14 13 36 36 H 1.08995 * 109.31691 * 55.22477 * 15 14 13 37 37 H 1.08999 * 109.69210 * 177.90434 * 16 15 14 38 38 H 1.08994 * 109.69004 * 298.43413 * 16 15 14 39 39 H 1.09006 * 109.83738 * 300.68006 * 19 17 16 40 40 H 1.08994 * 109.84407 * 61.64517 * 19 17 16 41 41 H 0.96997 * 119.34006 * 175.63030 * 23 21 20 42 42 H 1.08997 * 109.62276 * 305.06334 * 26 14 13 43 43 H 1.09006 * 109.62023 * 65.61434 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3756 7 6 1.9933 -0.4016 -3.7283 8 7 2.6766 -1.5186 -3.8511 9 14 1.4985 0.5627 -5.2497 10 1 2.0896 1.9236 -5.1870 11 1 1.9936 -0.1371 -6.4621 12 1 0.0185 0.6682 -5.3092 13 6 2.0400 -0.7212 1.2493 14 7 1.6950 0.0630 2.4425 15 6 0.3119 -0.1926 2.8576 16 6 0.0015 0.5452 4.1656 17 6 0.2411 2.0368 3.9447 18 1 -0.4126 2.3960 3.1499 19 6 -0.0088 2.8483 5.2157 20 8 0.2184 4.2509 4.8936 21 6 1.2770 4.5638 4.1325 22 8 1.6133 5.7297 4.0700 23 7 1.9863 3.6620 3.4353 24 6 1.7039 2.2381 3.5333 25 1 2.3470 1.8036 4.2987 26 6 1.9524 1.4957 2.2248 27 1 -0.3632 -0.9332 0.4303 28 1 -0.3634 0.8392 0.5930 29 1 -0.3633 0.0938 -1.0234 30 1 3.1264 -0.7994 -1.2056 31 1 1.6055 -1.7197 -1.2952 32 1 2.9239 -1.8415 -4.7317 33 1 3.1226 -0.8325 1.1880 34 1 1.5768 -1.7056 1.3150 35 1 -0.3679 0.1528 2.0787 36 1 0.1720 -1.2634 3.0057 37 1 -1.0390 0.3776 4.4438 38 1 0.6563 0.1808 4.9571 39 1 -1.0371 2.7069 5.5487 40 1 0.6809 2.5321 5.9982 41 1 2.7015 3.9659 2.8548 42 1 2.9873 1.6386 1.9137 43 1 1.2804 1.8755 1.4551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665167341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:05 Heat of formation + Delta-G solvation = -82.726794 kcal Electronic energy + Delta-G solvation = -23342.864303 eV Core-core repulsion = 20001.609790 eV Total energy + Delta-G solvation = -3341.254513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.43923 -39.33733 -37.30809 -36.13805 -34.37255 -33.13408 -31.65228 -29.89072 -28.25455 -27.02971 -25.55067 -23.78046 -23.51934 -22.51879 -20.64887 -20.18522 -19.03620 -18.43995 -17.57248 -16.41706 -16.37879 -15.58992 -15.35704 -15.06160 -14.95964 -14.53936 -14.42764 -14.17011 -13.68286 -13.54335 -12.96952 -12.59421 -12.50653 -12.18065 -11.92453 -11.74792 -11.52249 -11.33875 -11.22052 -10.94504 -10.90416 -10.80672 -10.75125 -10.62669 -10.29431 -10.26345 -9.80470 -9.49639 -9.37139 -9.17349 -8.40683 -7.94994 -6.05463 -4.07647 2.43886 2.63960 3.18840 3.28618 3.33875 3.35966 3.93442 4.06078 4.21915 4.40925 4.48483 4.65913 4.83367 4.98969 5.08484 5.13736 5.24069 5.29941 5.37227 5.45466 5.54443 5.65924 5.67824 5.71010 5.82507 5.86104 5.88396 6.03907 6.12528 6.25320 6.41417 6.63843 6.70725 6.86857 7.01195 7.17799 7.24315 7.47487 7.58791 7.72581 7.92875 7.97207 8.36029 8.98264 9.56439 11.05511 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.004034 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.215405 B = 6939.480669 C = 7660.655800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 H 0.062 0.938 4 C 0.031 3.969 5 C -0.518 4.518 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.060 3.940 14 N -0.535 5.535 15 C 0.034 3.966 16 C -0.103 4.103 17 C -0.143 4.143 18 H 0.091 0.909 19 C 0.069 3.931 20 O -0.345 6.345 21 C 0.660 3.340 22 O -0.539 6.539 23 N -0.723 5.723 24 C 0.134 3.866 25 H 0.084 0.916 26 C 0.049 3.951 27 H 0.042 0.958 28 H 0.032 0.968 29 H 0.071 0.929 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.115 0.885 40 H 0.080 0.920 41 H 0.421 0.579 42 H 0.085 0.915 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.736 2.350 18.136 18.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 H 0.081 0.919 4 C -0.006 4.006 5 C -0.556 4.556 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.093 4.093 16 C -0.141 4.141 17 C -0.162 4.162 18 H 0.109 0.891 19 C -0.005 4.005 20 O -0.256 6.256 21 C 0.413 3.587 22 O -0.425 6.425 23 N -0.391 5.391 24 C 0.029 3.971 25 H 0.102 0.898 26 C -0.080 4.080 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.260 0.740 42 H 0.104 0.896 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.564 2.731 18.642 19.386 hybrid contribution -0.407 0.520 -1.984 2.091 sum -4.972 3.251 16.658 17.686 Atomic orbital electron populations 1.22052 0.96598 0.98724 1.02421 1.21878 0.95252 1.00275 0.96786 0.91943 1.19066 0.96092 0.95395 0.90088 1.21168 1.35062 1.08320 0.91091 0.92836 1.25004 0.95198 0.95034 0.99071 1.69945 1.38723 1.21100 1.23619 0.86712 0.78890 0.80181 0.82556 1.20267 1.21264 1.20314 1.22414 1.01176 0.96269 0.86796 1.61900 1.22435 1.05974 1.35628 1.22510 0.90178 1.00595 0.96045 1.21485 1.02091 0.91431 0.99081 1.22131 0.97261 0.98233 0.98592 0.89108 1.23500 1.03944 0.76498 0.96600 1.86619 1.44099 1.29504 1.65368 1.17909 0.78026 0.85015 0.77760 1.91029 1.66695 1.17271 1.67510 1.45367 1.38330 1.06476 1.48900 1.20999 0.95763 0.80304 1.00043 0.89781 1.22210 1.02704 0.88707 0.94331 0.93886 0.94884 0.91051 0.96626 0.96602 0.92934 0.90690 0.91085 0.92306 0.90346 0.90447 0.90494 0.86734 0.90160 0.74047 0.89616 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.55 37.16 0.28 -2.09 16 2 C -0.12 -2.21 1.82 -90.62 -0.16 -2.37 16 3 H 0.06 1.16 6.00 -51.92 -0.31 0.85 16 4 C 0.03 0.75 4.44 -27.89 -0.12 0.62 16 5 C -0.52 -13.89 8.06 -34.44 -0.28 -14.17 16 6 H 0.05 1.41 7.33 -52.49 -0.38 1.02 16 7 C 0.06 1.62 5.46 -17.81 -0.10 1.52 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.06 0.90 5.13 -3.83 -0.02 0.88 16 14 N -0.54 -6.37 4.81 -234.70 -1.13 -7.50 16 15 C 0.03 0.35 4.72 -3.78 -0.02 0.33 16 16 C -0.10 -0.75 5.56 -26.72 -0.15 -0.90 16 17 C -0.14 -1.20 2.13 -90.71 -0.19 -1.40 16 18 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 19 C 0.07 0.53 6.69 37.08 0.25 0.77 16 20 O -0.34 -4.22 10.45 -38.96 -0.41 -4.63 16 21 C 0.66 9.05 8.53 53.82 0.46 9.51 16 22 O -0.54 -9.50 17.96 -19.43 -0.35 -9.85 16 23 N -0.72 -7.89 5.36 -59.77 -0.32 -8.21 16 24 C 0.13 1.29 2.86 -68.59 -0.20 1.10 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 26 C 0.05 0.57 4.03 -3.93 -0.02 0.55 16 27 H 0.04 0.66 7.13 -51.93 -0.37 0.29 16 28 H 0.03 0.49 5.75 -51.93 -0.30 0.19 16 29 H 0.07 1.40 6.64 -51.93 -0.35 1.06 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.04 7.58 -51.93 -0.39 0.65 16 35 H 0.06 0.67 4.25 -51.93 -0.22 0.45 16 36 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.42 4.26 8.79 -40.82 -0.36 3.90 16 42 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 43 H 0.06 0.74 5.60 -51.93 -0.29 0.45 16 LS Contribution 326.41 15.07 4.92 4.92 Total: -1.00 -31.58 326.41 -8.58 -40.16 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.75 Total: -0.07 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -0.27 Total: -5.64 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: -0.71 Total: -41.10 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.76 Total: -14.47 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.58 -8.58 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665167341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.566 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds