Wall clock time and date at job start Tue Mar 31 2020 05:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.47176 * 2 1 4 4 C 1.53000 * 109.47332 * 240.00247 * 2 1 3 5 5 C 1.50695 * 109.47015 * 64.99679 * 4 2 1 6 6 H 1.07998 * 120.00334 * 0.02562 * 5 4 2 7 7 C 1.37889 * 119.99902 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99653 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00021 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46992 * 60.00347 * 9 7 5 11 11 H 1.48494 * 109.47235 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47258 * 300.00521 * 9 7 5 13 13 C 1.53000 * 109.47203 * 119.99736 * 2 1 3 14 14 N 1.46897 * 109.47162 * 292.90642 * 13 2 1 15 15 C 1.46652 * 111.00051 * 82.12694 * 14 13 2 16 16 C 1.53347 * 110.39500 * 175.51039 * 15 14 13 17 17 C 1.52677 * 108.35255 * 58.18713 * 16 15 14 18 18 H 1.09002 * 109.47193 * 60.03366 * 17 16 15 19 19 C 1.52856 * 111.88300 * 181.56990 * 17 16 15 20 20 O 1.45694 * 107.56392 * 181.16088 * 19 17 16 21 21 C 1.34084 * 118.24500 * 317.57487 * 20 19 17 22 22 O 1.21505 * 118.13812 * 193.57295 * 21 20 19 23 23 N 1.34247 * 123.72279 * 13.59778 * 21 20 19 24 24 C 1.45497 * 121.32148 * 355.61337 * 23 21 20 25 25 H 1.09006 * 108.83566 * 266.66939 * 24 23 21 26 26 C 1.47185 * 111.00121 * 316.72351 * 14 13 2 27 27 H 1.08996 * 109.46432 * 204.75258 * 1 2 3 28 28 H 1.08998 * 109.47390 * 324.75391 * 1 2 3 29 29 H 1.09001 * 109.46755 * 84.76086 * 1 2 3 30 30 H 1.08999 * 109.47224 * 184.99821 * 4 2 1 31 31 H 1.08999 * 109.46961 * 304.99770 * 4 2 1 32 32 H 0.96994 * 119.99496 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47115 * 172.90213 * 13 2 1 34 34 H 1.08999 * 109.46617 * 52.90716 * 13 2 1 35 35 H 1.09006 * 109.31246 * 295.79309 * 15 14 13 36 36 H 1.08995 * 109.31691 * 55.22477 * 15 14 13 37 37 H 1.08999 * 109.69210 * 177.90434 * 16 15 14 38 38 H 1.08994 * 109.69004 * 298.43413 * 16 15 14 39 39 H 1.09006 * 109.83738 * 300.68006 * 19 17 16 40 40 H 1.08994 * 109.84407 * 61.64517 * 19 17 16 41 41 H 0.96997 * 119.34006 * 175.63030 * 23 21 20 42 42 H 1.08997 * 109.62276 * 305.06334 * 26 14 13 43 43 H 1.09006 * 109.62023 * 65.61434 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9746 -2.3756 7 6 1.9933 -0.4016 -3.7283 8 7 2.6766 -1.5186 -3.8511 9 14 1.4985 0.5627 -5.2497 10 1 2.0896 1.9236 -5.1870 11 1 1.9936 -0.1371 -6.4621 12 1 0.0185 0.6682 -5.3092 13 6 2.0400 -0.7212 1.2493 14 7 1.6950 0.0630 2.4425 15 6 0.3119 -0.1926 2.8576 16 6 0.0015 0.5452 4.1656 17 6 0.2411 2.0368 3.9447 18 1 -0.4126 2.3960 3.1499 19 6 -0.0088 2.8483 5.2157 20 8 0.2184 4.2509 4.8936 21 6 1.2770 4.5638 4.1325 22 8 1.6133 5.7297 4.0700 23 7 1.9863 3.6620 3.4353 24 6 1.7039 2.2381 3.5333 25 1 2.3470 1.8036 4.2987 26 6 1.9524 1.4957 2.2248 27 1 -0.3632 -0.9332 0.4303 28 1 -0.3634 0.8392 0.5930 29 1 -0.3633 0.0938 -1.0234 30 1 3.1264 -0.7994 -1.2056 31 1 1.6055 -1.7197 -1.2952 32 1 2.9239 -1.8415 -4.7317 33 1 3.1226 -0.8325 1.1880 34 1 1.5768 -1.7056 1.3150 35 1 -0.3679 0.1528 2.0787 36 1 0.1720 -1.2634 3.0057 37 1 -1.0390 0.3776 4.4438 38 1 0.6563 0.1808 4.9571 39 1 -1.0371 2.7069 5.5487 40 1 0.6809 2.5321 5.9982 41 1 2.7015 3.9659 2.8548 42 1 2.9873 1.6386 1.9137 43 1 1.2804 1.8755 1.4551 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665167341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:04 Heat of formation + Delta-G solvation = -105.943840 kcal Electronic energy + Delta-G solvation = -23343.871069 eV Core-core repulsion = 20001.609790 eV Total energy + Delta-G solvation = -3342.261279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.33222 -40.38399 -38.37208 -37.25625 -35.64943 -34.55141 -33.15560 -30.76304 -29.32161 -28.74376 -26.73273 -24.97756 -24.44207 -23.94068 -21.66600 -20.95311 -20.41666 -19.35565 -18.65799 -18.33483 -17.32773 -16.71938 -16.46877 -16.22906 -16.03277 -15.78544 -15.58097 -15.21328 -14.75673 -14.58799 -14.17930 -13.91502 -13.72809 -13.58367 -13.15865 -12.95690 -12.86502 -12.67541 -12.47722 -12.38307 -12.22731 -12.20303 -11.82276 -11.71179 -11.54925 -11.42348 -11.31845 -11.06190 -11.03930 -10.54446 -10.32711 -9.06711 -8.18824 -6.28063 1.38012 1.39034 1.46947 1.53095 1.64642 2.36396 2.39484 3.05165 3.14171 3.33449 3.46006 3.76501 3.95540 4.07717 4.15028 4.20647 4.25761 4.38366 4.43578 4.54640 4.55997 4.67586 4.73119 4.77399 4.83470 4.91013 4.97490 5.02211 5.07218 5.09311 5.25203 5.30361 5.38914 5.49731 5.54216 5.72922 5.77571 5.87329 6.06523 6.21739 6.28740 6.56271 6.88021 6.98441 7.40165 8.91846 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.004034 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.215405 B = 6939.480669 C = 7660.655800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.111 4.111 3 H 0.057 0.943 4 C 0.036 3.964 5 C -0.530 4.530 6 H 0.055 0.945 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.072 3.928 14 N -0.526 5.526 15 C 0.028 3.972 16 C -0.091 4.091 17 C -0.139 4.139 18 H 0.078 0.922 19 C 0.066 3.934 20 O -0.359 6.359 21 C 0.662 3.338 22 O -0.589 6.589 23 N -0.713 5.713 24 C 0.139 3.861 25 H 0.099 0.901 26 C 0.050 3.950 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.038 0.962 30 H -0.012 1.012 31 H -0.008 1.008 32 H 0.262 0.738 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.422 0.578 42 H 0.079 0.921 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 2.313 19.917 20.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.131 4.131 3 H 0.075 0.925 4 C -0.002 4.002 5 C -0.568 4.568 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.572 5.572 9 Si 0.779 3.221 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.194 1.194 13 C -0.056 4.056 14 N -0.249 5.249 15 C -0.100 4.100 16 C -0.129 4.129 17 C -0.158 4.158 18 H 0.096 0.904 19 C -0.006 4.006 20 O -0.270 6.270 21 C 0.415 3.585 22 O -0.478 6.478 23 N -0.380 5.380 24 C 0.034 3.966 25 H 0.117 0.883 26 C -0.078 4.078 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.006 0.994 31 H 0.010 0.990 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.162 0.838 40 H 0.119 0.881 41 H 0.262 0.738 42 H 0.098 0.902 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.948 2.668 20.441 21.456 hybrid contribution 0.006 0.458 -2.517 2.558 sum -5.943 3.126 17.924 19.141 Atomic orbital electron populations 1.21946 0.95277 1.00592 1.00948 1.21718 0.96235 0.99480 0.95688 0.92507 1.18957 0.94252 0.94597 0.92368 1.21589 1.34469 1.08441 0.92320 0.92672 1.25858 0.95291 0.95998 1.02361 1.70071 1.40103 1.22755 1.24314 0.85679 0.78875 0.78846 0.78742 1.19583 1.20950 1.19399 1.22177 1.00537 0.96492 0.86429 1.61916 1.24036 1.05707 1.33272 1.22650 0.88392 1.01659 0.97277 1.21452 1.04105 0.89681 0.97616 1.22114 0.95643 0.99326 0.98723 0.90402 1.23883 1.06396 0.73928 0.96437 1.86586 1.43110 1.32414 1.64887 1.17965 0.78131 0.84608 0.77798 1.90987 1.68316 1.19324 1.69218 1.45337 1.37725 1.06848 1.48087 1.21044 0.97365 0.79097 0.99118 0.88324 1.22165 1.01984 0.88644 0.95034 0.92381 0.92471 0.94266 0.99353 0.98989 0.92920 0.91654 0.90653 0.93415 0.89535 0.87776 0.89033 0.83761 0.88093 0.73848 0.90227 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 7.55 71.98 0.54 -3.76 16 2 C -0.11 -4.04 1.82 -10.79 -0.02 -4.06 16 3 H 0.06 2.12 6.00 -2.38 -0.01 2.11 16 4 C 0.04 1.78 4.44 29.85 0.13 1.91 16 5 C -0.53 -29.02 8.06 25.60 0.21 -28.81 16 6 H 0.06 2.93 7.33 -2.91 -0.02 2.91 16 7 C 0.00 0.15 5.46 84.66 0.46 0.61 16 8 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 9 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 C 0.07 2.07 5.13 86.30 0.44 2.52 16 14 N -0.53 -11.44 4.81 -896.45 -4.31 -15.75 16 15 C 0.03 0.47 4.72 86.47 0.41 0.88 16 16 C -0.09 -0.92 5.56 30.60 0.17 -0.75 16 17 C -0.14 -1.87 2.13 -10.85 -0.02 -1.89 16 18 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 19 C 0.07 0.76 6.69 71.93 0.48 1.24 16 20 O -0.36 -8.09 10.45 -49.93 -0.52 -8.61 16 21 C 0.66 17.59 8.53 129.87 1.11 18.70 16 22 O -0.59 -20.94 17.96 19.97 0.36 -20.58 16 23 N -0.71 -14.76 5.36 -574.30 -3.08 -17.84 16 24 C 0.14 2.34 2.86 45.10 0.13 2.47 16 25 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 26 C 0.05 1.09 4.03 86.08 0.35 1.44 16 27 H 0.06 1.71 7.13 -2.39 -0.02 1.69 16 28 H 0.06 1.60 5.75 -2.39 -0.01 1.59 16 29 H 0.04 1.53 6.64 -2.39 -0.02 1.52 16 30 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 31 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.08 2.13 7.58 -2.39 -0.02 2.11 16 35 H 0.05 0.94 4.25 -2.38 -0.01 0.93 16 36 H 0.09 1.39 7.94 -2.39 -0.02 1.37 16 37 H 0.10 0.61 8.14 -2.39 -0.02 0.60 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.42 8.38 8.79 -92.71 -0.82 7.57 16 42 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 43 H 0.04 0.97 5.60 -2.38 -0.01 0.96 16 Total: -1.00 -70.71 326.41 -0.65 -71.36 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.20 Total: 10.45 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.39 Total: -9.50 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -7.10 Total: -89.02 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.16 Total: -29.19 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.71 -0.65 -71.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665167341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.581 kcal (2) G-P(sol) polarization free energy of solvation -70.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds