Wall clock time and date at job start Tue Mar 31 2020 05:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46970 * 2 1 4 4 C 1.53001 * 109.47069 * 120.00229 * 2 1 3 5 5 C 1.50703 * 109.46905 * 294.99877 * 4 2 1 6 6 H 1.08001 * 120.00158 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99766 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99818 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00178 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.46723 * 89.99665 * 9 7 5 11 11 H 1.48495 * 109.46909 * 209.99784 * 9 7 5 12 12 H 1.48500 * 109.46786 * 329.99807 * 9 7 5 13 13 C 1.52997 * 109.47184 * 240.00236 * 2 1 3 14 14 N 1.46901 * 109.47201 * 174.87824 * 13 2 1 15 15 C 1.46658 * 110.99915 * 284.23048 * 14 13 2 16 16 C 1.53357 * 110.38879 * 175.50275 * 15 14 13 17 17 C 1.52666 * 108.34830 * 58.19791 * 16 15 14 18 18 H 1.08998 * 109.47292 * 60.03588 * 17 16 15 19 19 C 1.52856 * 111.87709 * 181.56505 * 17 16 15 20 20 O 1.45694 * 107.55402 * 181.19188 * 19 17 16 21 21 C 1.34082 * 118.24443 * 317.56682 * 20 19 17 22 22 O 1.21501 * 118.14088 * 193.86324 * 21 20 19 23 23 N 1.34253 * 123.72071 * 13.58184 * 21 20 19 24 24 C 1.45490 * 121.32376 * 355.64111 * 23 21 20 25 25 H 1.09002 * 108.83862 * 266.65676 * 24 23 21 26 26 C 1.47193 * 111.00439 * 158.83865 * 14 13 2 27 27 H 1.08997 * 109.46998 * 305.13356 * 1 2 3 28 28 H 1.09007 * 109.46685 * 65.13380 * 1 2 3 29 29 H 1.09001 * 109.46733 * 185.12472 * 1 2 3 30 30 H 1.08998 * 109.47096 * 54.99840 * 4 2 1 31 31 H 1.09000 * 109.47079 * 175.00291 * 4 2 1 32 32 H 0.96994 * 119.99933 * 180.02562 * 8 7 5 33 33 H 1.09005 * 109.47392 * 54.87971 * 13 2 1 34 34 H 1.08997 * 109.47388 * 294.87621 * 13 2 1 35 35 H 1.09005 * 109.31713 * 55.21701 * 15 14 13 36 36 H 1.09002 * 109.31628 * 295.78380 * 15 14 13 37 37 H 1.09000 * 109.68413 * 298.48200 * 16 15 14 38 38 H 1.09004 * 109.71902 * 177.93245 * 16 15 14 39 39 H 1.09002 * 109.84146 * 300.69478 * 19 17 16 40 40 H 1.09007 * 109.83900 * 61.60156 * 19 17 16 41 41 H 0.97005 * 119.33690 * 175.61829 * 23 21 20 42 42 H 1.08998 * 109.62280 * 65.60736 * 26 14 13 43 43 H 1.09010 * 109.61541 * 305.06286 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0800 0.9741 2.3757 7 6 1.9923 -0.4023 3.7283 8 7 1.6440 0.2766 4.7994 9 14 2.9626 -1.9890 3.9028 10 1 4.4161 -1.6854 3.8791 11 1 2.6144 -2.6431 5.1896 12 1 2.6287 -2.8996 2.7783 13 6 2.0400 -0.7212 -1.2492 14 7 3.5038 -0.6150 -1.3127 15 6 3.9154 0.7249 -1.7441 16 6 5.4427 0.8553 -1.6982 17 6 6.0441 -0.2199 -2.5998 18 1 5.6884 -0.0790 -3.6204 19 6 7.5723 -0.1873 -2.5838 20 8 8.0435 -1.2254 -3.4910 21 6 7.4286 -2.4167 -3.4663 22 8 7.9690 -3.3521 -4.0224 23 7 6.2524 -2.6358 -2.8573 24 6 5.5937 -1.5923 -2.0867 25 1 5.8857 -1.6895 -1.0410 26 6 4.0729 -1.6708 -2.1659 27 1 -0.3633 0.5914 0.8404 28 1 -0.3633 0.4322 -0.9325 29 1 -0.3633 -1.0236 0.0918 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2056 32 1 1.8912 -0.0463 5.6800 33 1 1.6037 -0.2630 -2.1369 34 1 1.7536 -1.7719 -1.2046 35 1 3.4699 1.4690 -1.0838 36 1 3.5692 0.8978 -2.7631 37 1 5.7926 0.7150 -0.6755 38 1 5.7385 1.8418 -2.0554 39 1 7.9251 0.7871 -2.9216 40 1 7.9359 -0.3830 -1.5750 41 1 5.8332 -3.5073 -2.9330 42 1 3.7518 -1.5212 -3.1967 43 1 3.7379 -2.6464 -1.8134 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665167346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:07 Heat of formation + Delta-G solvation = -87.220904 kcal Electronic energy + Delta-G solvation = -23258.764582 eV Core-core repulsion = 19917.315190 eV Total energy + Delta-G solvation = -3341.449392 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43428 -39.08528 -37.27534 -36.17786 -34.48985 -33.13007 -31.96380 -29.85369 -28.30730 -27.46555 -25.11577 -23.82431 -23.28064 -22.37658 -20.81793 -20.19085 -18.98441 -18.52139 -17.50946 -16.74897 -16.38889 -15.67111 -15.42018 -15.25663 -14.78660 -14.44836 -14.29823 -14.01107 -13.85233 -13.34275 -13.06825 -12.87071 -12.53811 -12.35218 -11.94842 -11.88667 -11.63287 -11.42618 -11.17332 -11.08246 -10.98662 -10.90595 -10.80111 -10.48988 -10.21934 -9.92353 -9.66093 -9.49869 -9.43056 -9.01438 -8.49039 -8.17928 -5.99994 -3.95890 2.37811 2.61033 3.13129 3.33090 3.40850 3.44944 3.87080 4.02455 4.15746 4.47942 4.49317 4.64264 4.81074 4.94042 5.06604 5.13253 5.21038 5.28658 5.35289 5.36099 5.46187 5.55808 5.64463 5.70354 5.78844 5.85702 5.89979 6.03286 6.09778 6.18507 6.33735 6.57110 6.75970 6.86942 7.03431 7.13827 7.18823 7.42633 7.43651 7.59491 7.87479 7.91553 8.59539 9.05956 9.64132 11.13714 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019441 B = 0.004529 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.886291 B = 6180.600013 C = 6713.529090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 H 0.062 0.938 4 C -0.001 4.001 5 C -0.513 4.513 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.908 5.908 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.065 3.935 14 N -0.530 5.530 15 C 0.057 3.943 16 C -0.105 4.105 17 C -0.140 4.140 18 H 0.088 0.912 19 C 0.067 3.933 20 O -0.345 6.345 21 C 0.661 3.339 22 O -0.541 6.541 23 N -0.724 5.724 24 C 0.131 3.869 25 H 0.091 0.909 26 C 0.056 3.944 27 H 0.067 0.933 28 H 0.030 0.970 29 H 0.045 0.955 30 H 0.008 0.992 31 H 0.026 0.974 32 H 0.261 0.739 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.419 0.581 42 H 0.038 0.962 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.609 0.030 -15.902 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.092 4.092 3 H 0.080 0.920 4 C -0.038 4.038 5 C -0.551 4.551 6 H 0.088 0.912 7 C -0.136 4.136 8 N -0.548 5.548 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.191 1.191 13 C -0.062 4.062 14 N -0.255 5.255 15 C -0.071 4.071 16 C -0.144 4.144 17 C -0.159 4.159 18 H 0.106 0.894 19 C -0.007 4.007 20 O -0.256 6.256 21 C 0.413 3.587 22 O -0.426 6.426 23 N -0.391 5.391 24 C 0.026 3.974 25 H 0.109 0.891 26 C -0.073 4.073 27 H 0.086 0.914 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.258 0.742 42 H 0.056 0.944 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.402 -0.192 -15.650 17.313 hybrid contribution -0.238 -0.954 -0.357 1.046 sum 7.163 -1.146 -16.007 17.574 Atomic orbital electron populations 1.21706 0.95882 1.01394 1.00199 1.21026 0.94559 0.99346 0.94229 0.91955 1.19528 0.96703 0.95193 0.92394 1.21216 1.35020 1.09400 0.89429 0.91214 1.25011 0.95748 0.96823 0.95981 1.69920 1.47513 1.39394 0.97994 0.86791 0.80631 0.84629 0.77232 1.20482 1.21818 1.19087 1.22305 0.84681 1.01197 0.98058 1.61453 1.11027 1.02116 1.50912 1.22116 0.94696 0.91475 0.98810 1.21507 0.95398 0.97113 1.00337 1.22120 0.95348 0.96373 1.02098 0.89390 1.23537 0.93449 0.90090 0.93586 1.86613 1.57603 1.21539 1.59809 1.17912 0.80135 0.82228 0.78376 1.91023 1.65484 1.36747 1.49397 1.45362 1.21828 1.16975 1.54968 1.21023 0.94000 0.86100 0.96300 0.89116 1.22152 0.92153 0.97140 0.95863 0.91420 0.95059 0.93550 0.97386 0.95548 0.92954 0.95461 0.91252 0.89080 0.95240 0.89633 0.90194 0.86578 0.89841 0.74237 0.94407 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.92 37.16 0.33 -1.94 16 2 C -0.07 -1.28 2.39 -90.62 -0.22 -1.50 16 3 H 0.06 1.13 6.70 -51.93 -0.35 0.78 16 4 C 0.00 -0.02 3.46 -27.88 -0.10 -0.11 16 5 C -0.51 -13.90 9.03 -34.44 -0.31 -14.21 16 6 H 0.07 2.04 7.30 -52.49 -0.38 1.65 16 7 C 0.06 1.84 5.47 -17.82 -0.10 1.74 16 8 N -0.91 -27.58 13.96 55.43 0.77 -26.81 16 9 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.06 0.90 4.41 -3.83 -0.02 0.88 16 14 N -0.53 -6.74 3.92 -234.67 -0.92 -7.66 16 15 C 0.06 0.62 5.27 -3.77 -0.02 0.60 16 16 C -0.11 -0.91 5.56 -26.72 -0.15 -1.05 16 17 C -0.14 -1.19 2.13 -90.72 -0.19 -1.39 16 18 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 19 C 0.07 0.55 6.69 37.08 0.25 0.80 16 20 O -0.34 -4.19 10.44 -38.96 -0.41 -4.59 16 21 C 0.66 8.81 8.53 53.82 0.46 9.26 16 22 O -0.54 -9.22 17.96 -19.43 -0.35 -9.57 16 23 N -0.72 -7.53 5.36 -59.77 -0.32 -7.85 16 24 C 0.13 1.29 2.86 -68.59 -0.20 1.09 16 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 26 C 0.06 0.58 5.18 -3.92 -0.02 0.56 16 27 H 0.07 1.30 7.11 -51.93 -0.37 0.93 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.01 0.18 7.20 -51.93 -0.37 -0.19 16 31 H 0.03 0.59 7.05 -51.93 -0.37 0.23 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.03 0.34 8.00 -51.93 -0.42 -0.07 16 34 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 35 H 0.09 1.11 6.65 -51.93 -0.35 0.76 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.42 3.83 8.79 -40.82 -0.36 3.47 16 42 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.87 7.95 -51.92 -0.41 0.46 16 LS Contribution 334.05 15.07 5.03 5.03 Total: -1.00 -32.78 334.05 -8.31 -41.08 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -7.17 Total: -1.19 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.28 Total: -5.27 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.47 Total: -42.32 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.76 Total: -14.17 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.78 -8.31 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665167346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.137 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds