Wall clock time and date at job start Tue Mar 31 2020 05:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99567 * 2 1 4 4 H 1.08998 * 109.47036 * 29.99876 * 3 2 1 5 5 C 1.53002 * 109.46721 * 269.99977 * 3 2 1 6 6 C 1.50689 * 109.47089 * 150.00100 * 3 2 1 7 7 O 1.21284 * 120.00047 * 4.99409 * 6 3 2 8 8 N 1.34780 * 120.00221 * 184.99605 * 6 3 2 9 9 C 1.46501 * 120.00271 * 179.97438 * 8 6 3 10 10 H 1.08997 * 115.55011 * 350.68770 * 9 8 6 11 11 C 1.53024 * 117.50154 * 136.41687 * 9 8 6 12 12 C 1.52820 * 117.50225 * 205.00207 * 9 8 6 13 13 C 1.53189 * 117.71035 * 0.14352 * 12 9 8 14 14 C 1.53354 * 108.76205 * 201.12167 * 13 12 9 15 15 N 1.46853 * 108.80718 * 308.67850 * 14 13 12 16 16 C 1.36934 * 120.38280 * 236.88361 * 15 14 13 17 17 H 1.07999 * 120.00123 * 151.82603 * 16 15 14 18 18 C 1.38819 * 120.00188 * 331.82592 * 16 15 14 19 19 N 1.31612 * 120.00386 * 159.29922 * 18 16 15 20 20 Si 1.86805 * 119.99790 * 339.29908 * 18 16 15 21 21 H 1.48493 * 109.47146 * 94.24529 * 20 18 16 22 22 H 1.48498 * 109.47206 * 214.24851 * 20 18 16 23 23 H 1.48501 * 109.47189 * 334.24638 * 20 18 16 24 24 C 1.46838 * 119.23556 * 56.91288 * 15 14 13 25 25 C 1.53180 * 117.71245 * 144.89988 * 12 9 8 26 26 H 1.08993 * 109.47325 * 60.00347 * 1 2 3 27 27 H 1.09004 * 109.46603 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47424 * 299.99837 * 1 2 3 29 29 H 1.08998 * 109.47284 * 299.99748 * 5 3 2 30 30 H 1.09000 * 109.47613 * 60.00408 * 5 3 2 31 31 H 1.09000 * 109.46970 * 180.02562 * 5 3 2 32 32 H 0.97001 * 119.99873 * 0.02562 * 8 6 3 33 33 H 1.09004 * 117.50572 * 0.02562 * 11 9 8 34 34 H 1.09002 * 117.50566 * 214.95499 * 11 9 8 35 35 H 1.09000 * 109.59075 * 81.33745 * 13 12 9 36 36 H 1.08995 * 109.58720 * 320.89667 * 13 12 9 37 37 H 1.08994 * 109.58323 * 68.47617 * 14 13 12 38 38 H 1.09002 * 109.57932 * 188.88444 * 14 13 12 39 39 H 0.96996 * 120.00474 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.58410 * 62.89590 * 24 15 14 41 41 H 1.09000 * 109.58133 * 183.30090 * 24 15 14 42 42 H 1.09000 * 109.59033 * 39.10149 * 25 12 9 43 43 H 1.09006 * 109.58650 * 278.67075 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3385 1.2641 0.7103 7 8 3.7896 0.2047 1.0914 8 7 4.0253 2.4042 0.9223 9 6 5.3165 2.3640 1.6134 10 1 5.5795 1.4064 2.0628 11 6 6.4533 3.2106 1.0367 12 6 5.7693 3.6314 2.3372 13 6 4.8405 4.8488 2.2905 14 6 5.6635 6.1087 2.5855 15 7 6.4284 5.8961 3.8209 16 6 6.2890 6.7550 4.8783 17 1 6.4537 6.4024 5.8857 18 6 5.9360 8.0789 4.6553 19 7 5.4105 8.7927 5.6281 20 14 6.2070 8.8473 2.9743 21 1 4.9627 8.7340 2.1718 22 1 6.5628 10.2799 3.1364 23 1 7.3111 8.1389 2.2783 24 6 7.3449 4.7522 3.9091 25 6 6.5562 3.4647 3.6408 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.8829 1.0776 -1.9564 30 1 1.2568 1.8014 -1.9564 31 1 2.6612 2.7670 -1.4426 32 1 3.6644 3.2516 0.6179 33 1 6.2405 3.7978 0.1434 34 1 7.4646 2.8101 1.1067 35 1 4.0573 4.7399 3.0408 36 1 4.3923 4.9287 1.3002 37 1 6.3489 6.2989 1.7596 38 1 4.9950 6.9604 2.7117 39 1 5.1641 9.7179 5.4724 40 1 8.1346 4.8586 3.1653 41 1 7.7829 4.7111 4.9064 42 1 7.2463 2.6263 3.5464 43 1 5.8653 3.2812 4.4637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690116071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:18 Heat of formation + Delta-G solvation = -31.038382 kcal Electronic energy + Delta-G solvation = -22867.147500 eV Core-core repulsion = 19528.134366 eV Total energy + Delta-G solvation = -3339.013135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.29976 -38.95853 -37.58859 -35.72871 -33.49429 -31.98236 -31.21277 -30.56196 -28.66200 -27.11736 -24.68234 -24.19383 -23.05435 -22.02827 -21.07725 -20.33683 -18.49276 -17.64944 -17.23220 -16.51591 -16.02323 -15.60949 -15.38629 -14.85430 -14.56740 -14.21582 -13.98725 -13.82491 -13.59008 -13.14020 -13.00024 -12.79742 -12.68740 -12.45310 -12.17114 -12.02045 -11.97563 -11.74281 -11.48305 -11.20783 -10.80969 -10.61317 -10.37930 -10.28153 -10.02229 -9.81885 -9.72101 -9.50142 -9.46322 -8.77141 -8.48273 -6.96329 -5.97063 -3.32749 2.45876 2.65662 3.27360 3.45727 3.48836 3.69408 4.01061 4.40247 4.50218 4.57057 4.68124 4.79433 4.91404 4.96081 4.96398 5.05450 5.11376 5.18334 5.29001 5.33501 5.36738 5.40097 5.70336 5.73235 5.83498 5.90215 5.95270 6.03028 6.13665 6.29709 6.33810 6.40096 6.45474 6.58549 6.66402 6.68066 6.73632 6.93969 7.39798 7.96319 8.12266 8.31993 8.93791 9.70609 10.08879 11.19047 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.003937 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.427913 B = 7111.070735 C = 7517.389317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.088 0.912 5 C -0.170 4.170 6 C 0.517 3.483 7 O -0.521 6.521 8 N -0.695 5.695 9 C 0.076 3.924 10 H 0.134 0.866 11 C -0.183 4.183 12 C -0.102 4.102 13 C -0.098 4.098 14 C 0.132 3.868 15 N -0.604 5.604 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.882 3.118 21 H -0.290 1.290 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.153 3.847 25 C -0.099 4.099 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.262 0.738 40 H 0.024 0.976 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.789 -12.801 -13.901 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.106 0.894 5 C -0.228 4.228 6 C 0.302 3.698 7 O -0.396 6.396 8 N -0.346 5.346 9 C -0.030 4.030 10 H 0.152 0.848 11 C -0.222 4.222 12 C -0.103 4.103 13 C -0.138 4.138 14 C 0.006 3.994 15 N -0.327 5.327 16 C -0.389 4.389 17 H 0.103 0.897 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.713 3.287 21 H -0.218 1.218 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.026 3.974 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.236 0.764 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.417 -13.601 -13.546 20.240 hybrid contribution -0.355 1.291 -1.168 1.777 sum -6.772 -12.310 -14.714 20.344 Atomic orbital electron populations 1.22894 0.80571 1.03270 1.00127 1.88051 1.19692 1.25088 1.94937 1.21930 0.93567 0.86975 0.96772 0.89427 1.22230 1.03468 1.02096 0.94997 1.20328 0.86011 0.84071 0.79408 1.90709 1.69185 1.29744 1.49948 1.45329 1.20889 1.09248 1.59171 1.21844 0.83191 0.97678 1.00239 0.84834 1.23571 0.97475 1.03425 0.97730 1.21937 1.00202 0.94443 0.93753 1.21637 0.97606 0.94771 0.99759 1.21274 0.93707 0.95357 0.89025 1.44279 1.45467 1.29219 1.13774 1.18952 1.43563 0.89314 0.87027 0.89738 1.25305 0.99328 0.96178 0.96788 1.69837 1.43044 1.09548 1.32697 0.86939 0.78308 0.77970 0.85487 1.21783 1.23183 1.19488 1.20883 0.90983 0.85925 0.99561 1.21684 0.98433 0.99084 0.94618 0.93821 0.89121 0.93687 0.90992 0.91138 0.90859 0.76357 0.88900 0.88191 0.91012 0.93379 0.95600 0.91019 0.92787 0.95792 0.91674 0.92361 0.91331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.29 9.89 -55.09 -0.54 -4.84 16 3 C 0.07 0.70 3.13 -27.89 -0.09 0.62 16 4 H 0.09 0.70 7.79 -51.93 -0.40 0.29 16 5 C -0.17 -1.31 9.48 37.16 0.35 -0.96 16 6 C 0.52 6.97 7.18 -10.99 -0.08 6.89 16 7 O -0.52 -9.31 16.07 -14.31 -0.23 -9.54 16 8 N -0.69 -8.36 5.31 -53.89 -0.29 -8.65 16 9 C 0.08 1.03 6.14 -68.01 -0.42 0.61 16 10 H 0.13 1.97 7.40 -51.93 -0.38 1.59 16 11 C -0.18 -2.37 9.86 -26.80 -0.26 -2.63 16 12 C -0.10 -1.53 1.94 -154.49 -0.30 -1.83 16 13 C -0.10 -1.62 5.37 -26.45 -0.14 -1.76 16 14 C 0.13 2.76 4.23 -3.67 -0.02 2.74 16 15 N -0.60 -13.97 2.71 -172.25 -0.47 -14.44 16 16 C -0.26 -7.16 10.00 -15.06 -0.15 -7.31 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 19 N -0.91 -27.55 13.97 55.49 0.78 -26.78 16 20 Si 0.88 21.93 24.40 -169.99 -4.15 17.78 16 21 H -0.29 -6.88 6.66 56.52 0.38 -6.51 16 22 H -0.30 -7.72 7.11 56.52 0.40 -7.32 16 23 H -0.27 -6.59 6.65 56.52 0.38 -6.22 16 24 C 0.15 2.92 6.51 -3.67 -0.02 2.90 16 25 C -0.10 -1.59 5.83 -26.45 -0.15 -1.74 16 26 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 31 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16 32 H 0.40 3.94 6.90 -40.82 -0.28 3.66 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.05 0.65 6.75 -51.93 -0.35 0.29 16 37 H 0.03 0.53 7.27 -51.93 -0.38 0.16 16 38 H 0.07 1.65 4.31 -51.93 -0.22 1.42 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 42 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -33.67 340.03 -7.12 -40.79 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.07 Total: 1.16 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -0.28 Total: -0.62 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.02 Total: -49.87 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: -0.77 Total: -14.38 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.67 -7.12 -40.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690116071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.756 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds