Wall clock time and date at job start Tue Mar 31 2020 05:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99567 * 2 1 4 4 H 1.08998 * 109.47036 * 29.99876 * 3 2 1 5 5 C 1.53002 * 109.46721 * 269.99977 * 3 2 1 6 6 C 1.50689 * 109.47089 * 150.00100 * 3 2 1 7 7 O 1.21284 * 120.00047 * 4.99409 * 6 3 2 8 8 N 1.34780 * 120.00221 * 184.99605 * 6 3 2 9 9 C 1.46501 * 120.00271 * 179.97438 * 8 6 3 10 10 H 1.08997 * 115.55011 * 350.68770 * 9 8 6 11 11 C 1.53024 * 117.50154 * 136.41687 * 9 8 6 12 12 C 1.52820 * 117.50225 * 205.00207 * 9 8 6 13 13 C 1.53189 * 117.71035 * 0.14352 * 12 9 8 14 14 C 1.53354 * 108.76205 * 201.12167 * 13 12 9 15 15 N 1.46853 * 108.80718 * 308.67850 * 14 13 12 16 16 C 1.36934 * 120.38280 * 236.88361 * 15 14 13 17 17 H 1.07999 * 120.00123 * 151.82603 * 16 15 14 18 18 C 1.38819 * 120.00188 * 331.82592 * 16 15 14 19 19 N 1.31612 * 120.00386 * 159.29922 * 18 16 15 20 20 Si 1.86805 * 119.99790 * 339.29908 * 18 16 15 21 21 H 1.48493 * 109.47146 * 94.24529 * 20 18 16 22 22 H 1.48498 * 109.47206 * 214.24851 * 20 18 16 23 23 H 1.48501 * 109.47189 * 334.24638 * 20 18 16 24 24 C 1.46838 * 119.23556 * 56.91288 * 15 14 13 25 25 C 1.53180 * 117.71245 * 144.89988 * 12 9 8 26 26 H 1.08993 * 109.47325 * 60.00347 * 1 2 3 27 27 H 1.09004 * 109.46603 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47424 * 299.99837 * 1 2 3 29 29 H 1.08998 * 109.47284 * 299.99748 * 5 3 2 30 30 H 1.09000 * 109.47613 * 60.00408 * 5 3 2 31 31 H 1.09000 * 109.46970 * 180.02562 * 5 3 2 32 32 H 0.97001 * 119.99873 * 0.02562 * 8 6 3 33 33 H 1.09004 * 117.50572 * 0.02562 * 11 9 8 34 34 H 1.09002 * 117.50566 * 214.95499 * 11 9 8 35 35 H 1.09000 * 109.59075 * 81.33745 * 13 12 9 36 36 H 1.08995 * 109.58720 * 320.89667 * 13 12 9 37 37 H 1.08994 * 109.58323 * 68.47617 * 14 13 12 38 38 H 1.09002 * 109.57932 * 188.88444 * 14 13 12 39 39 H 0.96996 * 120.00474 * 179.97438 * 19 18 16 40 40 H 1.09002 * 109.58410 * 62.89590 * 24 15 14 41 41 H 1.09000 * 109.58133 * 183.30090 * 24 15 14 42 42 H 1.09000 * 109.59033 * 39.10149 * 25 12 9 43 43 H 1.09006 * 109.58650 * 278.67075 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7714 -1.4425 6 6 3.3385 1.2641 0.7103 7 8 3.7896 0.2047 1.0914 8 7 4.0253 2.4042 0.9223 9 6 5.3165 2.3640 1.6134 10 1 5.5795 1.4064 2.0628 11 6 6.4533 3.2106 1.0367 12 6 5.7693 3.6314 2.3372 13 6 4.8405 4.8488 2.2905 14 6 5.6635 6.1087 2.5855 15 7 6.4284 5.8961 3.8209 16 6 6.2890 6.7550 4.8783 17 1 6.4537 6.4024 5.8857 18 6 5.9360 8.0789 4.6553 19 7 5.4105 8.7927 5.6281 20 14 6.2070 8.8473 2.9743 21 1 4.9627 8.7340 2.1718 22 1 6.5628 10.2799 3.1364 23 1 7.3111 8.1389 2.2783 24 6 7.3449 4.7522 3.9091 25 6 6.5562 3.4647 3.6408 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 2.8829 1.0776 -1.9564 30 1 1.2568 1.8014 -1.9564 31 1 2.6612 2.7670 -1.4426 32 1 3.6644 3.2516 0.6179 33 1 6.2405 3.7978 0.1434 34 1 7.4646 2.8101 1.1067 35 1 4.0573 4.7399 3.0408 36 1 4.3923 4.9287 1.3002 37 1 6.3489 6.2989 1.7596 38 1 4.9950 6.9604 2.7117 39 1 5.1641 9.7179 5.4724 40 1 8.1346 4.8586 3.1653 41 1 7.7829 4.7111 4.9064 42 1 7.2463 2.6263 3.5464 43 1 5.8653 3.2812 4.4637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690116071.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:17 Heat of formation + Delta-G solvation = -54.649487 kcal Electronic energy + Delta-G solvation = -22868.171355 eV Core-core repulsion = 19528.134366 eV Total energy + Delta-G solvation = -3340.036989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.34444 -40.10585 -38.52788 -37.24582 -34.72982 -33.71700 -32.22627 -31.97782 -30.18557 -27.70618 -26.05466 -25.44521 -24.52468 -23.21314 -22.44982 -21.39647 -19.94208 -18.73363 -18.35828 -17.90276 -17.18150 -16.97237 -16.43774 -15.96266 -15.84482 -15.47949 -15.37626 -15.30586 -14.52504 -14.42515 -14.25147 -14.23496 -13.68008 -13.63828 -13.47217 -13.31611 -12.98429 -12.80577 -12.61070 -12.39243 -12.25951 -12.13460 -12.09087 -11.60163 -11.50869 -11.29083 -11.10472 -10.83102 -10.66301 -10.49900 -9.71395 -8.84925 -8.14974 -5.46775 1.30483 1.44106 1.45789 1.53629 1.77291 2.43461 2.90278 2.97099 3.08648 3.37222 3.57735 3.71506 3.81261 3.89772 3.92714 4.01198 4.04915 4.38760 4.45306 4.50826 4.53935 4.60773 4.66735 4.70229 4.78498 4.81946 4.85351 4.85889 4.94298 4.96339 4.97962 5.13605 5.18317 5.22360 5.31472 5.46676 5.52155 5.89704 6.04299 6.14829 6.48493 6.95856 7.15633 7.65963 8.05738 9.05295 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.003937 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.427913 B = 7111.070735 C = 7517.389317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.396 6.396 3 C 0.069 3.931 4 H 0.113 0.887 5 C -0.164 4.164 6 C 0.512 3.488 7 O -0.573 6.573 8 N -0.684 5.684 9 C 0.082 3.918 10 H 0.120 0.880 11 C -0.161 4.161 12 C -0.119 4.119 13 C -0.089 4.089 14 C 0.126 3.874 15 N -0.619 5.619 16 C -0.251 4.251 17 H 0.046 0.954 18 C -0.038 4.038 19 N -0.960 5.960 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.314 1.314 23 H -0.259 1.259 24 C 0.149 3.851 25 C -0.090 4.090 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.414 0.586 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.053 0.947 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.048 0.952 39 H 0.261 0.739 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.085 0.915 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 -13.275 -17.377 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.315 6.315 3 C 0.008 3.992 4 H 0.130 0.870 5 C -0.222 4.222 6 C 0.299 3.701 7 O -0.452 6.452 8 N -0.336 5.336 9 C -0.024 4.024 10 H 0.138 0.862 11 C -0.200 4.200 12 C -0.121 4.121 13 C -0.128 4.128 14 C 0.001 3.999 15 N -0.344 5.344 16 C -0.381 4.381 17 H 0.063 0.937 18 C -0.232 4.232 19 N -0.606 5.606 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.243 1.243 23 H -0.183 1.183 24 C 0.024 3.976 25 C -0.130 4.130 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.252 0.748 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.856 -14.090 -17.068 23.170 hybrid contribution -0.223 1.340 0.006 1.359 sum -7.079 -12.750 -17.062 22.445 Atomic orbital electron populations 1.23095 0.78632 1.04212 1.01457 1.88005 1.21924 1.26368 1.95198 1.22073 0.91903 0.87054 0.98122 0.86973 1.22228 1.04445 1.02468 0.93057 1.21053 0.86956 0.83420 0.78635 1.90684 1.70634 1.31614 1.52234 1.45247 1.20288 1.09682 1.58339 1.21668 0.84404 0.96309 1.00060 0.86188 1.23680 0.97715 1.01973 0.96595 1.21790 1.01239 0.94735 0.94335 1.21474 0.96792 0.93205 1.01296 1.21351 0.93787 0.96719 0.88040 1.44415 1.47062 1.29421 1.13488 1.18874 1.41956 0.90180 0.87079 0.93653 1.25970 0.99724 0.96682 1.00826 1.69982 1.45411 1.09837 1.35383 0.85821 0.79116 0.76029 0.81039 1.19617 1.24349 1.18276 1.21028 0.91192 0.85951 0.99461 1.21535 0.98357 0.98125 0.94943 0.91655 0.88568 0.93087 0.92468 0.89160 0.88998 0.74768 0.87102 0.86932 0.92864 0.89506 0.94246 0.93360 0.92990 0.94149 0.92986 0.89654 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.82 113.37 1.23 1.51 16 2 O -0.40 -8.85 9.89 -129.99 -1.29 -10.13 16 3 C 0.07 1.24 3.13 29.85 0.09 1.33 16 4 H 0.11 1.40 7.79 -2.39 -0.02 1.39 16 5 C -0.16 -1.97 9.48 71.98 0.68 -1.28 16 6 C 0.51 12.87 7.18 87.65 0.63 13.50 16 7 O -0.57 -20.23 16.07 15.95 0.26 -19.97 16 8 N -0.68 -14.40 5.31 -442.79 -2.35 -16.75 16 9 C 0.08 1.99 6.14 44.94 0.28 2.26 16 10 H 0.12 3.35 7.40 -2.39 -0.02 3.33 16 11 C -0.16 -3.46 9.86 30.55 0.30 -3.16 16 12 C -0.12 -3.24 1.94 -52.17 -0.10 -3.35 16 13 C -0.09 -2.67 5.37 30.78 0.17 -2.50 16 14 C 0.13 4.95 4.23 86.43 0.37 5.32 16 15 N -0.62 -28.36 2.71 -698.88 -1.89 -30.25 16 16 C -0.25 -14.20 10.00 84.04 0.84 -13.36 16 17 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16 18 C -0.04 -2.18 5.23 84.86 0.44 -1.73 16 19 N -0.96 -60.22 13.97 21.65 0.30 -59.92 16 20 Si 0.95 45.35 24.40 68.60 1.67 47.02 16 21 H -0.27 -11.85 6.66 99.48 0.66 -11.19 16 22 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 23 H -0.26 -11.69 6.65 99.48 0.66 -11.03 16 24 C 0.15 5.55 6.51 86.43 0.56 6.11 16 25 C -0.09 -2.77 5.83 30.77 0.18 -2.59 16 26 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 27 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 0.74 7.87 -2.39 -0.02 0.72 16 31 H 0.09 0.74 7.92 -2.39 -0.02 0.72 16 32 H 0.41 6.40 6.90 -92.71 -0.64 5.76 16 33 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 1.93 6.75 -2.39 -0.02 1.91 16 37 H 0.04 1.46 7.27 -2.39 -0.02 1.45 16 38 H 0.05 2.13 4.31 -2.39 -0.01 2.11 16 39 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 42 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 43 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -76.38 340.03 2.64 -73.74 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.27 Total: 14.20 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 5.66 Total: 2.06 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.94 Total: -106.92 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -1.03 Total: -30.10 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.67 Total: 47.02 kcal Total: -76.38 2.64 -73.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690116071.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.087 kcal (2) G-P(sol) polarization free energy of solvation -76.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds