Wall clock time and date at job start Tue Mar 31 2020 05:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99882 * 2 1 4 4 H 1.09007 * 109.47002 * 329.99663 * 3 2 1 5 5 C 1.52993 * 109.47417 * 90.00086 * 3 2 1 6 6 C 1.50706 * 109.46953 * 210.00023 * 3 2 1 7 7 O 1.21288 * 119.99755 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00042 * 179.97438 * 6 3 2 9 9 C 1.46501 * 119.99829 * 179.97438 * 8 6 3 10 10 H 1.08993 * 115.55608 * 350.69143 * 9 8 6 11 11 C 1.53031 * 117.49745 * 136.42462 * 9 8 6 12 12 C 1.52819 * 117.50253 * 205.00511 * 9 8 6 13 13 C 1.53184 * 117.71655 * 144.90319 * 12 9 8 14 14 C 1.53343 * 108.77016 * 158.89020 * 13 12 9 15 15 N 1.46842 * 108.81865 * 51.30643 * 14 13 12 16 16 C 1.36934 * 120.38064 * 123.12043 * 15 14 13 17 17 H 1.08002 * 120.00336 * 331.80388 * 16 15 14 18 18 C 1.38816 * 119.99797 * 151.80179 * 16 15 14 19 19 N 1.31625 * 120.00012 * 159.30142 * 18 16 15 20 20 Si 1.86798 * 119.99921 * 339.29824 * 18 16 15 21 21 H 1.48504 * 109.46854 * 94.24976 * 20 18 16 22 22 H 1.48500 * 109.47002 * 214.24821 * 20 18 16 23 23 H 1.48500 * 109.47213 * 334.24788 * 20 18 16 24 24 C 1.46846 * 119.23356 * 303.10132 * 15 14 13 25 25 C 1.53191 * 117.71101 * 0.14363 * 12 9 8 26 26 H 1.08997 * 109.47211 * 60.00070 * 1 2 3 27 27 H 1.09004 * 109.46900 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47016 * 300.00139 * 1 2 3 29 29 H 1.08998 * 109.47359 * 59.99959 * 5 3 2 30 30 H 1.09003 * 109.47288 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.47309 * 299.99770 * 5 3 2 32 32 H 0.96997 * 120.00285 * 0.02562 * 8 6 3 33 33 H 1.09003 * 117.49957 * 214.95788 * 11 9 8 34 34 H 1.08996 * 117.50606 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.58562 * 278.67829 * 13 12 9 36 36 H 1.09003 * 109.58388 * 39.10341 * 13 12 9 37 37 H 1.09000 * 109.58103 * 291.50189 * 14 13 12 38 38 H 1.08998 * 109.57938 * 171.10778 * 14 13 12 39 39 H 0.96999 * 120.00135 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.57572 * 297.10145 * 24 15 14 41 41 H 1.08996 * 109.57885 * 176.70332 * 24 15 14 42 42 H 1.08993 * 109.59180 * 320.90129 * 25 12 9 43 43 H 1.08998 * 109.58766 * 81.33634 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2639 -0.7104 7 8 3.7472 0.2192 -1.1718 8 7 4.0722 2.3877 -0.8341 9 6 5.3638 2.3471 -1.5242 10 1 5.7351 1.3520 -1.7690 11 6 5.6771 3.4798 -2.5044 12 6 6.3944 3.4139 -1.1563 13 6 7.8713 3.0075 -1.1557 14 6 8.7306 4.2704 -1.2906 15 7 8.3031 5.2446 -0.2786 16 6 9.2019 5.7428 0.6264 17 1 10.0557 5.1509 0.9214 18 6 9.0158 7.0088 1.1645 19 7 9.6035 7.3360 2.2959 20 14 7.9312 8.2481 0.2830 21 1 6.5539 8.1811 0.8344 22 1 8.4781 9.6143 0.4819 23 1 7.8993 7.9342 -1.1681 24 6 6.9006 5.6787 -0.2484 25 6 6.0041 4.4444 -0.0921 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.8830 1.0776 1.9563 30 1 2.6606 2.7674 1.4424 31 1 1.2569 1.8015 1.9563 32 1 3.7454 3.2233 -0.4655 33 1 6.2545 3.2299 -3.3945 34 1 4.9225 4.2553 -2.6353 35 1 8.1105 2.5009 -0.2207 36 1 8.0672 2.3407 -1.9955 37 1 8.6005 4.6962 -2.2856 38 1 9.7791 4.0172 -1.1340 39 1 9.4731 8.2205 2.6721 40 1 6.6570 6.1917 -1.1787 41 1 6.7448 6.3524 0.5941 42 1 4.9611 4.7310 -0.2260 43 1 6.1428 4.0153 0.9002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690116072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:20 Heat of formation + Delta-G solvation = -30.823566 kcal Electronic energy + Delta-G solvation = -22906.978949 eV Core-core repulsion = 19567.975130 eV Total energy + Delta-G solvation = -3339.003820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.30203 -38.95544 -37.59041 -35.72806 -33.51523 -31.97574 -31.17149 -30.56039 -28.64809 -27.11870 -24.67400 -24.19759 -23.04854 -22.01504 -21.08822 -20.32875 -18.50290 -17.63161 -17.21923 -16.53939 -16.08789 -15.51461 -15.37673 -14.86040 -14.59569 -14.21081 -13.99173 -13.82707 -13.56601 -13.14864 -12.90556 -12.78182 -12.69543 -12.45275 -12.17924 -12.00009 -11.97133 -11.74211 -11.47600 -11.20369 -10.80672 -10.61036 -10.37662 -10.28249 -10.01972 -9.81776 -9.71632 -9.50278 -9.46077 -8.76903 -8.47976 -6.95986 -5.96701 -3.32385 2.44356 2.67640 3.27544 3.45898 3.49015 3.69439 4.01219 4.40545 4.50492 4.57135 4.68702 4.79377 4.91519 4.95947 4.96396 5.03089 5.11760 5.23940 5.29532 5.35334 5.37746 5.40473 5.71450 5.80665 5.83953 5.89972 5.95253 6.03294 6.13961 6.30037 6.34074 6.40288 6.45591 6.58860 6.66726 6.68378 6.73816 6.94319 7.39805 7.96670 8.12264 8.32362 8.94116 9.70936 10.09186 11.19395 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.003980 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.720330 B = 7033.819447 C = 7541.313352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.070 3.930 4 H 0.087 0.913 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.522 6.522 8 N -0.695 5.695 9 C 0.076 3.924 10 H 0.134 0.866 11 C -0.184 4.184 12 C -0.101 4.101 13 C -0.099 4.099 14 C 0.153 3.847 15 N -0.604 5.604 16 C -0.260 4.260 17 H 0.085 0.915 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.882 3.118 21 H -0.290 1.290 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.132 3.868 25 C -0.098 4.098 26 H 0.043 0.957 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.024 0.976 38 H 0.065 0.935 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.322 -9.138 -6.019 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.009 3.991 4 H 0.105 0.895 5 C -0.230 4.230 6 C 0.302 3.698 7 O -0.396 6.396 8 N -0.346 5.346 9 C -0.030 4.030 10 H 0.152 0.848 11 C -0.223 4.223 12 C -0.103 4.103 13 C -0.138 4.138 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.388 4.388 17 H 0.103 0.897 18 C -0.176 4.176 19 N -0.551 5.551 20 Si 0.713 3.287 21 H -0.218 1.218 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.006 3.994 25 C -0.138 4.138 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.870 -9.965 -6.222 20.557 hybrid contribution -1.091 1.547 -0.221 1.906 sum -17.961 -8.418 -6.443 20.856 Atomic orbital electron populations 1.22882 0.80642 1.03252 1.00022 1.88055 1.19632 1.25128 1.94927 1.21933 0.93447 0.86869 0.96870 0.89547 1.22258 1.03533 1.02349 0.94892 1.20341 0.85872 0.83864 0.79766 1.90711 1.71250 1.30184 1.47478 1.45331 1.20038 1.11182 1.58071 1.21846 0.84679 0.96648 0.99789 0.84828 1.23574 1.03367 1.00820 0.94501 1.21934 0.94002 0.98119 0.96232 1.21682 0.91687 0.99034 1.01414 1.20882 0.96715 0.88369 0.91390 1.44277 1.03931 1.49501 1.35020 1.18950 1.06228 0.97780 1.15860 0.89736 1.25309 0.98155 0.97140 0.97021 1.69844 1.46584 1.21184 1.17516 0.86936 0.79289 0.81208 0.81260 1.21781 1.23190 1.19497 1.21272 0.84699 0.94101 0.99292 1.21636 0.97747 0.96630 0.97750 0.93860 0.89132 0.93786 0.90788 0.90701 0.91158 0.76348 0.88190 0.88924 0.91308 0.92371 0.95803 0.91672 0.92790 0.95621 0.91015 0.93402 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.31 16 2 O -0.36 -4.28 9.88 -55.14 -0.54 -4.83 16 3 C 0.07 0.71 3.14 -27.88 -0.09 0.63 16 4 H 0.09 0.64 7.79 -51.92 -0.40 0.24 16 5 C -0.17 -1.46 9.42 37.15 0.35 -1.11 16 6 C 0.52 6.96 7.23 -10.98 -0.08 6.88 16 7 O -0.52 -9.31 16.07 -14.36 -0.23 -9.54 16 8 N -0.69 -8.36 5.24 -53.88 -0.28 -8.65 16 9 C 0.08 1.03 6.14 -68.01 -0.42 0.61 16 10 H 0.13 1.97 7.40 -51.93 -0.38 1.59 16 11 C -0.18 -2.38 9.86 -26.80 -0.26 -2.64 16 12 C -0.10 -1.52 1.94 -154.49 -0.30 -1.82 16 13 C -0.10 -1.59 5.83 -26.46 -0.15 -1.74 16 14 C 0.15 2.92 6.51 -3.68 -0.02 2.90 16 15 N -0.60 -13.97 2.71 -172.27 -0.47 -14.43 16 16 C -0.26 -7.15 10.00 -15.06 -0.15 -7.30 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 18 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 19 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 20 Si 0.88 21.93 24.40 -169.99 -4.15 17.79 16 21 H -0.29 -6.88 6.66 56.52 0.38 -6.50 16 22 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 23 H -0.27 -6.60 6.65 56.52 0.38 -6.22 16 24 C 0.13 2.75 4.23 -3.67 -0.02 2.74 16 25 C -0.10 -1.62 5.37 -26.45 -0.14 -1.76 16 26 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 27 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.25 7.87 -51.93 -0.41 -0.16 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.55 7.57 -51.93 -0.39 0.16 16 31 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 32 H 0.40 3.95 6.54 -40.82 -0.27 3.68 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.03 0.53 7.27 -51.93 -0.38 0.15 16 41 H 0.07 1.65 4.31 -51.93 -0.22 1.42 16 42 H 0.05 0.64 6.75 -51.93 -0.35 0.29 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 339.23 15.07 5.11 5.11 Total: -1.00 -33.67 339.23 -7.10 -40.78 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.04 Total: 1.32 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -0.28 Total: -0.76 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.03 Total: -49.87 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.78 Total: -14.37 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.67 -7.10 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690116072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.954 kcal (2) G-P(sol) polarization free energy of solvation -33.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds