Wall clock time and date at job start Tue Mar 31 2020 05:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99882 * 2 1 4 4 H 1.09007 * 109.47002 * 329.99663 * 3 2 1 5 5 C 1.52993 * 109.47417 * 90.00086 * 3 2 1 6 6 C 1.50706 * 109.46953 * 210.00023 * 3 2 1 7 7 O 1.21288 * 119.99755 * 0.02562 * 6 3 2 8 8 N 1.34773 * 120.00042 * 179.97438 * 6 3 2 9 9 C 1.46501 * 119.99829 * 179.97438 * 8 6 3 10 10 H 1.08993 * 115.55608 * 350.69143 * 9 8 6 11 11 C 1.53031 * 117.49745 * 136.42462 * 9 8 6 12 12 C 1.52819 * 117.50253 * 205.00511 * 9 8 6 13 13 C 1.53184 * 117.71655 * 144.90319 * 12 9 8 14 14 C 1.53343 * 108.77016 * 158.89020 * 13 12 9 15 15 N 1.46842 * 108.81865 * 51.30643 * 14 13 12 16 16 C 1.36934 * 120.38064 * 123.12043 * 15 14 13 17 17 H 1.08002 * 120.00336 * 331.80388 * 16 15 14 18 18 C 1.38816 * 119.99797 * 151.80179 * 16 15 14 19 19 N 1.31625 * 120.00012 * 159.30142 * 18 16 15 20 20 Si 1.86798 * 119.99921 * 339.29824 * 18 16 15 21 21 H 1.48504 * 109.46854 * 94.24976 * 20 18 16 22 22 H 1.48500 * 109.47002 * 214.24821 * 20 18 16 23 23 H 1.48500 * 109.47213 * 334.24788 * 20 18 16 24 24 C 1.46846 * 119.23356 * 303.10132 * 15 14 13 25 25 C 1.53191 * 117.71101 * 0.14363 * 12 9 8 26 26 H 1.08997 * 109.47211 * 60.00070 * 1 2 3 27 27 H 1.09004 * 109.46900 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47016 * 300.00139 * 1 2 3 29 29 H 1.08998 * 109.47359 * 59.99959 * 5 3 2 30 30 H 1.09003 * 109.47288 * 180.02562 * 5 3 2 31 31 H 1.08997 * 109.47309 * 299.99770 * 5 3 2 32 32 H 0.96997 * 120.00285 * 0.02562 * 8 6 3 33 33 H 1.09003 * 117.49957 * 214.95788 * 11 9 8 34 34 H 1.08996 * 117.50606 * 0.02562 * 11 9 8 35 35 H 1.08999 * 109.58562 * 278.67829 * 13 12 9 36 36 H 1.09003 * 109.58388 * 39.10341 * 13 12 9 37 37 H 1.09000 * 109.58103 * 291.50189 * 14 13 12 38 38 H 1.08998 * 109.57938 * 171.10778 * 14 13 12 39 39 H 0.96999 * 120.00135 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.57572 * 297.10145 * 24 15 14 41 41 H 1.08996 * 109.57885 * 176.70332 * 24 15 14 42 42 H 1.08993 * 109.59180 * 320.90129 * 25 12 9 43 43 H 1.08998 * 109.58766 * 81.33634 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5139 5 6 2.2177 1.7714 1.4424 6 6 3.3387 1.2639 -0.7104 7 8 3.7472 0.2192 -1.1718 8 7 4.0722 2.3877 -0.8341 9 6 5.3638 2.3471 -1.5242 10 1 5.7351 1.3520 -1.7690 11 6 5.6771 3.4798 -2.5044 12 6 6.3944 3.4139 -1.1563 13 6 7.8713 3.0075 -1.1557 14 6 8.7306 4.2704 -1.2906 15 7 8.3031 5.2446 -0.2786 16 6 9.2019 5.7428 0.6264 17 1 10.0557 5.1509 0.9214 18 6 9.0158 7.0088 1.1645 19 7 9.6035 7.3360 2.2959 20 14 7.9312 8.2481 0.2830 21 1 6.5539 8.1811 0.8344 22 1 8.4781 9.6143 0.4819 23 1 7.8993 7.9342 -1.1681 24 6 6.9006 5.6787 -0.2484 25 6 6.0041 4.4444 -0.0921 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 2.8830 1.0776 1.9563 30 1 2.6606 2.7674 1.4424 31 1 1.2569 1.8015 1.9563 32 1 3.7454 3.2233 -0.4655 33 1 6.2545 3.2299 -3.3945 34 1 4.9225 4.2553 -2.6353 35 1 8.1105 2.5009 -0.2207 36 1 8.0672 2.3407 -1.9955 37 1 8.6005 4.6962 -2.2856 38 1 9.7791 4.0172 -1.1340 39 1 9.4731 8.2205 2.6721 40 1 6.6570 6.1917 -1.1787 41 1 6.7448 6.3524 0.5941 42 1 4.9611 4.7310 -0.2260 43 1 6.1428 4.0153 0.9002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690116072.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:19 Heat of formation + Delta-G solvation = -54.420251 kcal Electronic energy + Delta-G solvation = -22908.002178 eV Core-core repulsion = 19567.975130 eV Total energy + Delta-G solvation = -3340.027049 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34675 -40.10267 -38.52603 -37.24499 -34.74507 -33.72531 -32.21152 -31.97652 -30.17090 -27.69919 -26.04495 -25.47189 -24.51856 -23.20032 -22.45960 -21.38958 -19.94801 -18.74796 -18.30922 -17.91017 -17.18817 -17.05861 -16.32653 -15.95707 -15.83631 -15.53285 -15.36379 -15.30180 -14.53058 -14.42904 -14.26053 -14.20167 -13.72991 -13.58098 -13.48111 -13.32511 -12.98569 -12.82744 -12.60303 -12.38480 -12.25591 -12.13028 -12.09042 -11.59952 -11.50774 -11.28876 -11.09861 -10.82855 -10.65161 -10.50985 -9.71091 -8.84662 -8.14713 -5.46530 1.30583 1.44183 1.44637 1.53752 1.79107 2.43643 2.90335 2.97403 3.08831 3.37399 3.57753 3.71624 3.81328 3.89145 3.91835 4.00290 4.05337 4.39046 4.45725 4.51021 4.55110 4.60966 4.64546 4.70340 4.77479 4.82115 4.85833 4.86225 4.94196 4.96528 4.98128 5.13826 5.18121 5.22699 5.31659 5.46786 5.52478 5.89954 6.05709 6.15084 6.48522 6.96067 7.15680 7.66179 8.05926 9.05561 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025340 B = 0.003980 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.720330 B = 7033.819447 C = 7541.313352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.397 6.397 3 C 0.073 3.927 4 H 0.121 0.879 5 C -0.169 4.169 6 C 0.512 3.488 7 O -0.573 6.573 8 N -0.683 5.683 9 C 0.081 3.919 10 H 0.120 0.880 11 C -0.161 4.161 12 C -0.119 4.119 13 C -0.090 4.090 14 C 0.149 3.851 15 N -0.619 5.619 16 C -0.250 4.250 17 H 0.046 0.954 18 C -0.038 4.038 19 N -0.960 5.960 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.314 1.314 23 H -0.258 1.258 24 C 0.126 3.874 25 C -0.088 4.088 26 H 0.055 0.945 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.414 0.586 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.261 0.739 40 H 0.039 0.961 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.595 -8.652 -7.865 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.316 6.316 3 C 0.012 3.988 4 H 0.138 0.862 5 C -0.227 4.227 6 C 0.299 3.701 7 O -0.452 6.452 8 N -0.335 5.335 9 C -0.025 4.025 10 H 0.138 0.862 11 C -0.200 4.200 12 C -0.121 4.121 13 C -0.130 4.130 14 C 0.024 3.976 15 N -0.344 5.344 16 C -0.380 4.380 17 H 0.063 0.937 18 C -0.233 4.233 19 N -0.606 5.606 20 Si 0.780 3.220 21 H -0.196 1.196 22 H -0.244 1.244 23 H -0.183 1.183 24 C 0.001 3.999 25 C -0.128 4.128 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.252 0.748 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.189 -9.482 -8.092 23.727 hybrid contribution -0.028 1.279 0.357 1.328 sum -20.217 -8.203 -7.734 23.148 Atomic orbital electron populations 1.23099 0.78543 1.04204 1.01537 1.88011 1.22045 1.26365 1.95160 1.22043 0.91999 0.87162 0.97593 0.86164 1.22262 1.04365 1.02301 0.93734 1.21068 0.86909 0.83163 0.78968 1.90686 1.72670 1.32036 1.49790 1.45250 1.19246 1.11575 1.57478 1.21670 0.84728 0.96040 1.00024 0.86191 1.23681 1.02604 1.00150 0.93531 1.21789 0.93457 0.98995 0.97859 1.21532 0.92312 0.97583 1.01531 1.21026 0.96791 0.88863 0.90951 1.44413 1.04563 1.50105 1.35294 1.18870 1.05825 0.97405 1.15917 0.93668 1.25977 1.00680 0.99050 0.97563 1.69989 1.49670 1.21572 1.19408 0.85815 0.78294 0.77506 0.80350 1.19605 1.24366 1.18275 1.21349 0.83985 0.95780 0.98784 1.21472 0.98939 0.94897 0.97444 0.92606 0.88671 0.91889 0.93030 0.89303 0.89001 0.74772 0.86908 0.87118 0.93382 0.89661 0.94143 0.92994 0.92999 0.94261 0.93352 0.89522 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.82 113.37 1.23 1.50 16 2 O -0.40 -8.79 9.88 -129.94 -1.28 -10.07 16 3 C 0.07 1.29 3.14 29.85 0.09 1.38 16 4 H 0.12 1.28 7.79 -2.38 -0.02 1.26 16 5 C -0.17 -2.40 9.42 71.98 0.68 -1.72 16 6 C 0.51 12.84 7.23 87.66 0.63 13.48 16 7 O -0.57 -20.20 16.07 15.98 0.26 -19.94 16 8 N -0.68 -14.41 5.24 -442.77 -2.32 -16.73 16 9 C 0.08 1.98 6.14 44.94 0.28 2.26 16 10 H 0.12 3.35 7.40 -2.39 -0.02 3.33 16 11 C -0.16 -3.45 9.86 30.55 0.30 -3.15 16 12 C -0.12 -3.25 1.94 -52.17 -0.10 -3.35 16 13 C -0.09 -2.78 5.83 30.77 0.18 -2.60 16 14 C 0.15 5.55 6.51 86.43 0.56 6.12 16 15 N -0.62 -28.37 2.71 -698.92 -1.89 -30.27 16 16 C -0.25 -14.17 10.00 84.03 0.84 -13.33 16 17 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 18 C -0.04 -2.22 5.23 84.86 0.44 -1.78 16 19 N -0.96 -60.32 13.97 21.65 0.30 -60.02 16 20 Si 0.95 45.39 24.40 68.60 1.67 47.07 16 21 H -0.27 -11.85 6.66 99.48 0.66 -11.19 16 22 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 23 H -0.26 -11.69 6.65 99.48 0.66 -11.03 16 24 C 0.13 4.95 4.23 86.43 0.37 5.32 16 25 C -0.09 -2.67 5.37 30.78 0.17 -2.50 16 26 H 0.06 0.53 8.08 -2.39 -0.02 0.51 16 27 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.06 0.52 7.87 -2.39 -0.02 0.50 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 0.99 7.57 -2.39 -0.02 0.97 16 31 H 0.09 0.92 7.87 -2.39 -0.02 0.90 16 32 H 0.41 6.42 6.54 -92.71 -0.61 5.82 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 2.15 8.10 -2.39 -0.02 2.13 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 39 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 40 H 0.04 1.46 7.27 -2.39 -0.02 1.44 16 41 H 0.05 2.13 4.31 -2.39 -0.01 2.12 16 42 H 0.09 1.92 6.75 -2.39 -0.02 1.91 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -76.55 339.23 2.71 -73.84 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.30 Total: 14.50 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 5.67 Total: 1.62 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -3.91 Total: -107.01 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.03 Total: -30.02 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.07 kcal Total: -76.55 2.71 -73.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690116072.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.422 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds