Wall clock time and date at job start Tue Mar 31 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42896 * 113.99742 * 2 1 4 4 H 1.09007 * 109.47443 * 329.99762 * 3 2 1 5 5 C 1.53002 * 109.47281 * 90.00050 * 3 2 1 6 6 C 1.50702 * 109.47024 * 209.99938 * 3 2 1 7 7 O 1.21288 * 119.99861 * 0.02562 * 6 3 2 8 8 N 1.34778 * 120.00258 * 179.97438 * 6 3 2 9 9 C 1.46490 * 119.99979 * 179.97438 * 8 6 3 10 10 H 1.09001 * 115.56964 * 9.32650 * 9 8 6 11 11 C 1.53042 * 117.50616 * 223.61303 * 9 8 6 12 12 C 1.52825 * 117.50198 * 155.02944 * 9 8 6 13 13 C 1.53180 * 117.71574 * 215.10260 * 12 9 8 14 14 C 1.53352 * 108.76851 * 201.11608 * 13 12 9 15 15 N 1.46835 * 108.81508 * 308.69464 * 14 13 12 16 16 C 1.36943 * 120.38277 * 236.91804 * 15 14 13 17 17 H 1.08004 * 119.99803 * 151.80155 * 16 15 14 18 18 C 1.38811 * 119.99761 * 331.80458 * 16 15 14 19 19 N 1.31622 * 119.99572 * 159.30414 * 18 16 15 20 20 Si 1.86793 * 120.00101 * 339.30442 * 18 16 15 21 21 H 1.48504 * 109.47130 * 94.26521 * 20 18 16 22 22 H 1.48498 * 109.46971 * 214.25745 * 20 18 16 23 23 H 1.48495 * 109.47531 * 334.25971 * 20 18 16 24 24 C 1.46851 * 119.23963 * 56.89798 * 15 14 13 25 25 C 1.53182 * 117.71131 * 359.86678 * 12 9 8 26 26 H 1.09005 * 109.46736 * 300.00112 * 1 2 3 27 27 H 1.08993 * 109.46860 * 60.00160 * 1 2 3 28 28 H 1.08996 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47090 * 60.00180 * 5 3 2 30 30 H 1.08998 * 109.46673 * 179.97438 * 5 3 2 31 31 H 1.08996 * 109.47270 * 299.99619 * 5 3 2 32 32 H 0.97000 * 119.99449 * 0.02562 * 8 6 3 33 33 H 1.08994 * 117.49785 * 359.97438 * 11 9 8 34 34 H 1.08998 * 117.50758 * 145.04944 * 11 9 8 35 35 H 1.09006 * 109.59013 * 320.90073 * 13 12 9 36 36 H 1.08999 * 109.58672 * 81.33012 * 13 12 9 37 37 H 1.09000 * 109.57930 * 188.89491 * 14 13 12 38 38 H 1.09002 * 109.58329 * 68.49307 * 14 13 12 39 39 H 0.97001 * 119.99981 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.58473 * 183.29923 * 24 15 14 41 41 H 1.09001 * 109.68833 * 62.95609 * 24 15 14 42 42 H 1.09004 * 109.58811 * 278.65888 * 25 12 9 43 43 H 1.08996 * 109.59218 * 39.08985 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 3.3387 1.2639 -0.7104 7 8 3.7472 0.2192 -1.1717 8 7 4.0722 2.3878 -0.8340 9 6 5.3638 2.3472 -1.5241 10 1 5.5899 1.4167 -2.0449 11 6 6.5318 3.0999 -0.8827 12 6 5.8716 3.6465 -2.1483 13 6 6.6571 3.5476 -3.4596 14 6 7.4992 4.8182 -3.6274 15 7 6.6300 5.9888 -3.4533 16 6 6.5302 6.9306 -4.4424 17 1 5.6237 7.5079 -4.5489 18 6 7.5942 7.1431 -5.3082 19 7 7.3890 7.7177 -6.4745 20 14 9.3172 6.6137 -4.8182 21 1 9.5903 5.2571 -5.3571 22 1 10.3061 7.5739 -5.3708 23 1 9.4253 6.5891 -3.3374 24 6 5.8686 6.1378 -2.2065 25 6 4.9934 4.8940 -2.0100 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 2.8830 1.0776 1.9563 30 1 2.6614 2.7670 1.4424 31 1 1.2569 1.8015 1.9563 32 1 3.7453 3.2233 -0.4654 33 1 6.3390 3.6255 0.0524 34 1 7.5262 2.6646 -0.9816 35 1 7.3119 2.6767 -3.4286 36 1 5.9632 3.4561 -4.2952 37 1 7.9398 4.8353 -4.6242 38 1 8.2890 4.8348 -2.8764 39 1 8.1325 7.8666 -7.0794 40 1 5.2362 7.0234 -2.2682 41 1 6.5558 6.2373 -1.3662 42 1 4.2099 4.8751 -2.7676 43 1 4.5441 4.9165 -1.0172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690116073.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:23 Heat of formation + Delta-G solvation = -30.774140 kcal Electronic energy + Delta-G solvation = -22806.934280 eV Core-core repulsion = 19467.932603 eV Total energy + Delta-G solvation = -3339.001676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.31167 -38.96128 -37.59933 -35.73335 -33.50919 -31.97393 -31.27580 -30.50577 -28.65079 -27.13341 -24.68199 -24.22401 -23.04741 -21.99645 -21.07214 -20.40728 -18.46397 -17.67787 -17.22220 -16.49275 -16.12166 -15.63562 -15.31809 -14.83816 -14.58329 -14.27704 -13.94450 -13.76200 -13.58740 -13.17335 -12.96974 -12.86876 -12.78608 -12.33035 -12.18261 -12.14914 -11.90553 -11.71334 -11.49895 -11.20978 -10.80315 -10.63322 -10.32364 -10.29514 -9.99357 -9.87810 -9.70209 -9.49845 -9.44945 -8.76491 -8.47563 -6.95808 -5.96143 -3.32115 2.44445 2.65193 3.31742 3.48086 3.51169 3.67655 4.01107 4.38448 4.52233 4.54526 4.66265 4.79272 4.91528 4.94121 4.96269 5.03818 5.11039 5.15677 5.28494 5.31543 5.35243 5.41627 5.68785 5.71957 5.83329 5.90691 5.94887 6.03122 6.13377 6.30077 6.34072 6.40663 6.45408 6.58744 6.67161 6.68516 6.72674 6.93924 7.38764 7.96906 8.11566 8.32222 8.94248 9.71536 10.09535 11.19879 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035186 B = 0.003549 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.572471 B = 7887.481036 C = 8051.545750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.069 3.931 4 H 0.089 0.911 5 C -0.171 4.171 6 C 0.516 3.484 7 O -0.521 6.521 8 N -0.694 5.694 9 C 0.075 3.925 10 H 0.134 0.866 11 C -0.183 4.183 12 C -0.101 4.101 13 C -0.099 4.099 14 C 0.132 3.868 15 N -0.604 5.604 16 C -0.262 4.262 17 H 0.084 0.916 18 C 0.023 3.977 19 N -0.908 5.908 20 Si 0.883 3.117 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.153 3.847 25 C -0.099 4.099 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.400 0.600 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.064 0.936 41 H 0.023 0.977 42 H 0.069 0.931 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -10.727 15.869 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.008 3.992 4 H 0.107 0.893 5 C -0.228 4.228 6 C 0.301 3.699 7 O -0.395 6.395 8 N -0.346 5.346 9 C -0.030 4.030 10 H 0.151 0.849 11 C -0.222 4.222 12 C -0.103 4.103 13 C -0.138 4.138 14 C 0.006 3.994 15 N -0.327 5.327 16 C -0.390 4.390 17 H 0.102 0.898 18 C -0.175 4.175 19 N -0.551 5.551 20 Si 0.713 3.287 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.027 3.973 25 C -0.138 4.138 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.236 0.764 33 H 0.112 0.888 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.087 0.913 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.435 -11.587 15.382 21.903 hybrid contribution 0.661 0.398 0.388 0.864 sum -9.774 -11.189 15.770 21.666 Atomic orbital electron populations 1.22892 0.80560 1.03279 1.00096 1.88051 1.19711 1.25091 1.94921 1.21933 0.93576 0.86994 0.96712 0.89344 1.22243 1.03469 1.02059 0.95074 1.20343 0.85819 0.83888 0.79858 1.90718 1.71245 1.30240 1.47327 1.45315 1.20123 1.11014 1.58123 1.21854 0.82667 0.98303 1.00179 0.84864 1.23573 0.97410 1.03818 0.97387 1.21935 1.00265 0.93491 0.94606 1.21694 0.98552 0.98940 0.94646 1.21290 0.92304 0.85981 0.99839 1.44271 1.51686 1.21582 1.15190 1.18926 0.99343 1.14691 1.06036 0.89814 1.25299 0.97820 0.98115 0.96315 1.69842 1.31423 1.46523 1.07313 0.86933 0.86079 0.76600 0.79079 1.21618 1.23204 1.19482 1.20851 0.93317 0.94751 0.88381 1.21626 0.97846 0.94647 0.99664 0.93833 0.93691 0.89127 0.90992 0.90874 0.91150 0.76396 0.88811 0.88279 0.92499 0.91085 0.90946 0.95541 0.92766 0.91790 0.95861 0.91254 0.93225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.82 101.05 1.09 1.30 16 2 O -0.36 -4.19 9.88 -55.14 -0.54 -4.74 16 3 C 0.07 0.68 3.14 -27.88 -0.09 0.59 16 4 H 0.09 0.66 7.79 -51.92 -0.40 0.26 16 5 C -0.17 -1.22 9.42 37.16 0.35 -0.87 16 6 C 0.52 6.82 7.23 -10.98 -0.08 6.74 16 7 O -0.52 -9.29 16.07 -14.36 -0.23 -9.52 16 8 N -0.69 -8.05 5.24 -53.88 -0.28 -8.34 16 9 C 0.08 1.03 6.14 -68.00 -0.42 0.61 16 10 H 0.13 2.02 7.40 -51.93 -0.38 1.63 16 11 C -0.18 -2.37 9.87 -26.79 -0.26 -2.64 16 12 C -0.10 -1.52 1.94 -154.49 -0.30 -1.82 16 13 C -0.10 -1.74 5.83 -26.46 -0.15 -1.90 16 14 C 0.13 2.82 4.23 -3.68 -0.02 2.80 16 15 N -0.60 -13.98 2.71 -172.25 -0.47 -14.45 16 16 C -0.26 -7.20 10.00 -15.06 -0.15 -7.35 16 17 H 0.08 2.46 8.06 -52.48 -0.42 2.03 16 18 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 19 N -0.91 -27.73 13.97 55.49 0.78 -26.95 16 20 Si 0.88 22.25 24.40 -169.99 -4.15 18.10 16 21 H -0.29 -7.03 6.66 56.52 0.38 -6.66 16 22 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 23 H -0.27 -6.66 6.65 56.52 0.38 -6.28 16 24 C 0.15 2.85 6.52 -3.67 -0.02 2.83 16 25 C -0.10 -1.47 5.37 -26.45 -0.14 -1.62 16 26 H 0.04 0.24 7.87 -51.93 -0.41 -0.17 16 27 H 0.04 0.29 8.08 -51.93 -0.42 -0.13 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.40 7.56 -51.93 -0.39 0.01 16 31 H 0.07 0.39 7.87 -51.93 -0.41 -0.02 16 32 H 0.40 3.62 6.54 -40.82 -0.27 3.35 16 33 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.07 1.72 4.31 -51.93 -0.22 1.49 16 38 H 0.03 0.56 7.27 -51.93 -0.38 0.18 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.06 1.18 7.92 -51.93 -0.41 0.77 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.57 6.75 -51.93 -0.35 0.22 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -33.98 339.24 -7.10 -41.08 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.04 Total: 0.44 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.28 Total: -0.75 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.03 Total: -49.73 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.78 Total: -14.25 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.15 Total: 18.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.98 -7.10 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690116073.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.305 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds