Wall clock time and date at job start Tue Mar 31 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20758 * 119.99997 * 2 1 4 4 C 1.50699 * 119.99693 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47355 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47168 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46949 * 294.99717 * 11 10 9 13 13 N 1.46499 * 109.47392 * 54.99694 * 11 10 9 14 14 C 1.36941 * 120.00177 * 205.00605 * 13 11 10 15 15 H 1.08001 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31625 * 119.99805 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00354 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47036 * 90.00174 * 18 16 14 20 20 H 1.48495 * 109.47425 * 210.00328 * 18 16 14 21 21 H 1.48506 * 109.47229 * 330.00347 * 18 16 14 22 22 C 1.52997 * 109.47519 * 175.00001 * 11 10 9 23 23 C 1.53003 * 117.50025 * 248.74690 * 22 11 10 24 24 C 1.52997 * 117.50117 * 180.08541 * 22 11 10 25 25 H 1.09000 * 109.46592 * 270.00011 * 1 2 3 26 26 H 1.08997 * 109.47005 * 29.99632 * 1 2 3 27 27 H 1.08996 * 109.47343 * 150.00431 * 1 2 3 28 28 H 1.09000 * 109.47577 * 59.99854 * 4 2 1 29 29 H 1.09002 * 109.47066 * 299.99343 * 4 2 1 30 30 H 1.09000 * 109.46966 * 59.99627 * 5 4 2 31 31 H 1.09002 * 109.46807 * 299.99649 * 5 4 2 32 32 H 1.08998 * 109.46837 * 59.99832 * 6 5 4 33 33 H 1.09002 * 109.46926 * 299.99636 * 6 5 4 34 34 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 0.97000 * 119.99498 * 24.99864 * 13 11 10 38 38 H 0.97003 * 119.99947 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54757 * 34.41089 * 22 11 10 40 40 H 1.09001 * 117.49296 * 359.97438 * 23 22 11 41 41 H 1.08991 * 117.50309 * 145.01577 * 23 22 11 42 42 H 1.08999 * 117.49717 * 214.97918 * 24 22 11 43 43 H 1.08993 * 117.49842 * 359.97328 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0113 -2.0752 -0.0022 8 8 6.4156 -0.9318 -0.0035 9 7 6.8872 -3.0997 -0.0018 10 6 8.3274 -2.8320 -0.0090 11 6 9.0924 -4.1570 -0.0076 12 1 8.9020 -4.6855 0.9265 13 7 8.6457 -4.9801 -1.1341 14 6 8.7684 -6.3429 -1.0776 15 1 9.1949 -6.8107 -0.2026 16 6 8.3455 -7.1226 -2.1452 17 7 8.4639 -8.4324 -2.0911 18 14 7.6084 -6.3133 -3.6588 19 1 8.6878 -6.0073 -4.6317 20 1 6.6255 -7.2344 -4.2836 21 1 6.9260 -5.0547 -3.2645 22 6 10.5914 -3.8807 -0.1408 23 6 11.2731 -4.2960 -1.4460 24 6 11.5329 -5.0865 -0.1612 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5137 28 1 1.9971 -1.8764 -0.8908 29 1 1.9972 -1.8770 0.8892 30 1 4.0284 -0.4542 0.8889 31 1 4.0277 -0.4539 -0.8911 32 1 4.2661 -2.9223 -0.8908 33 1 4.2667 -2.9220 0.8892 34 1 6.5637 -4.0142 -0.0012 35 1 8.5870 -2.2640 -0.9024 36 1 8.5946 -2.2568 0.8776 37 1 8.2628 -4.5598 -1.9200 38 1 8.1681 -8.9774 -2.8370 39 1 10.9470 -2.9725 0.3460 40 1 10.6537 -4.7665 -2.2097 41 1 12.0774 -3.6614 -1.8178 42 1 12.5082 -4.9715 0.3118 43 1 11.0846 -6.0766 -0.0793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690141947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:51 Heat of formation + Delta-G solvation = -51.615018 kcal Electronic energy + Delta-G solvation = -21980.738855 eV Core-core repulsion = 18640.833450 eV Total energy + Delta-G solvation = -3339.905405 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.85896 -39.35006 -37.77309 -34.71538 -34.25967 -33.30520 -31.30994 -30.92721 -29.08085 -27.61427 -23.84355 -22.85130 -21.99917 -21.45811 -20.11182 -19.79420 -19.18527 -17.78840 -16.79373 -16.30374 -16.01802 -15.52208 -15.38215 -15.13993 -14.93411 -14.71658 -14.04037 -13.92222 -13.39016 -13.12642 -12.85953 -12.76633 -12.65921 -12.40711 -12.03941 -12.01330 -11.54662 -11.52448 -11.21874 -11.00287 -10.88262 -10.83152 -10.60293 -10.27506 -9.94133 -9.69082 -9.61251 -9.48985 -9.22634 -9.05611 -8.72919 -7.41628 -5.87626 -3.24591 1.73178 2.87999 3.27795 3.32579 3.37968 3.41877 3.85943 4.48179 4.51556 4.60200 4.77528 4.79728 4.94807 5.04364 5.09024 5.19894 5.28203 5.31249 5.37057 5.40888 5.42586 5.56081 5.66120 5.72261 5.74939 5.85064 5.94771 5.99253 6.00922 6.24025 6.28798 6.35700 6.55874 6.62143 6.81366 6.99102 7.11412 7.28414 7.83936 7.88610 8.30790 8.49908 9.08394 9.80525 10.00011 11.30034 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.003683 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.117598 B = 7601.427985 C = 8700.996211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.455 6.455 4 C -0.175 4.175 5 C -0.095 4.095 6 C -0.142 4.142 7 C 0.507 3.493 8 O -0.551 6.551 9 N -0.718 5.718 10 C 0.116 3.884 11 C 0.198 3.802 12 H 0.066 0.934 13 N -0.743 5.743 14 C -0.244 4.244 15 H 0.093 0.907 16 C 0.010 3.990 17 N -0.930 5.930 18 Si 0.879 3.121 19 H -0.284 1.284 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.178 4.178 23 C -0.165 4.165 24 C -0.170 4.170 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.409 0.591 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.482 11.012 5.115 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.226 3.774 3 O -0.329 6.329 4 C -0.212 4.212 5 C -0.133 4.133 6 C -0.182 4.182 7 C 0.294 3.706 8 O -0.430 6.430 9 N -0.370 5.370 10 C -0.009 4.009 11 C 0.088 3.912 12 H 0.083 0.917 13 N -0.386 5.386 14 C -0.373 4.373 15 H 0.111 0.889 16 C -0.186 4.186 17 N -0.577 5.577 18 Si 0.709 3.291 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.200 4.200 23 C -0.203 4.203 24 C -0.207 4.207 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.826 12.120 5.185 17.058 hybrid contribution -0.611 -0.208 -1.251 1.407 sum -11.437 11.912 3.934 16.976 Atomic orbital electron populations 1.22308 0.94660 1.04719 1.04575 1.24665 0.91867 0.90478 0.70369 1.90446 1.71962 1.35231 1.35234 1.22203 0.96734 0.97445 1.04819 1.21134 0.91465 0.96070 1.04677 1.21680 0.92181 0.99788 1.04596 1.20627 0.88722 0.85155 0.76145 1.90687 1.80528 1.21513 1.50250 1.46060 1.06745 1.09994 1.74248 1.21613 0.79541 0.98043 1.01698 1.19959 0.89468 0.89215 0.92556 0.91657 1.42851 1.74669 1.04089 1.17022 1.19013 1.35050 0.80318 1.02958 0.88920 1.24641 1.01108 0.95098 0.97796 1.69691 1.52666 1.03114 1.32201 0.86659 0.79333 0.78466 0.84640 1.21090 1.21833 1.20356 1.23009 0.95957 0.98297 1.02727 1.22841 1.01943 1.03135 0.92333 1.22900 0.98654 0.97645 1.01516 0.88759 0.89874 0.89652 0.88211 0.88207 0.90717 0.90719 0.88794 0.88823 0.75445 0.91862 0.91509 0.80377 0.92987 0.89338 0.87254 0.91062 0.90841 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.11 10.25 36.01 0.37 -0.74 16 2 C 0.35 3.15 7.27 -29.03 -0.21 2.94 16 3 O -0.46 -6.22 16.72 6.00 0.10 -6.12 16 4 C -0.17 -1.32 5.62 -27.88 -0.16 -1.47 16 5 C -0.10 -1.08 3.79 -26.73 -0.10 -1.18 16 6 C -0.14 -1.56 5.70 -27.89 -0.16 -1.72 16 7 C 0.51 7.75 7.83 -10.98 -0.09 7.67 16 8 O -0.55 -10.43 15.98 5.56 0.09 -10.34 16 9 N -0.72 -10.95 5.39 -60.29 -0.32 -11.27 16 10 C 0.12 1.85 5.22 -4.04 -0.02 1.83 16 11 C 0.20 3.45 2.86 -67.93 -0.19 3.26 16 12 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 13 N -0.74 -15.37 2.88 -53.43 -0.15 -15.52 16 14 C -0.24 -6.07 8.64 -15.06 -0.13 -6.20 16 15 H 0.09 2.51 7.14 -52.49 -0.37 2.14 16 16 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 17 N -0.93 -27.33 13.97 55.49 0.78 -26.56 16 18 Si 0.88 20.70 27.74 -169.99 -4.71 15.98 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 22 C -0.18 -2.99 5.70 -90.62 -0.52 -3.51 16 23 C -0.17 -2.98 9.74 -26.69 -0.26 -3.24 16 24 C -0.17 -3.02 9.87 -26.69 -0.26 -3.28 16 25 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.29 8.12 -51.93 -0.42 -0.13 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 31 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.41 6.08 8.13 -40.82 -0.33 5.75 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.36 7.70 5.66 -40.82 -0.23 7.46 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.09 1.32 8.11 -51.93 -0.42 0.90 16 40 H 0.11 2.29 6.68 -51.93 -0.35 1.94 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.11 2.25 6.22 -51.93 -0.32 1.92 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -32.21 355.40 -7.80 -40.01 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -7.10 Total: 13.94 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -1.83 Total: -5.48 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.30 Total: -53.36 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.19 Total: -16.46 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.71 Total: 15.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.21 -7.80 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690141947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.605 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds