Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20758 * 119.99997 * 2 1 4 4 C 1.50699 * 119.99693 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47355 * 179.97438 * 5 4 2 7 7 C 1.50694 * 109.47168 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00363 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99988 * 179.97438 * 7 6 5 10 10 C 1.46493 * 119.99864 * 179.72721 * 9 7 6 11 11 C 1.53001 * 109.47084 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46949 * 294.99717 * 11 10 9 13 13 N 1.46499 * 109.47392 * 54.99694 * 11 10 9 14 14 C 1.36941 * 120.00177 * 205.00605 * 13 11 10 15 15 H 1.08001 * 119.99593 * 359.97438 * 14 13 11 16 16 C 1.38805 * 119.99910 * 180.02562 * 14 13 11 17 17 N 1.31625 * 119.99805 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00354 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47036 * 90.00174 * 18 16 14 20 20 H 1.48495 * 109.47425 * 210.00328 * 18 16 14 21 21 H 1.48506 * 109.47229 * 330.00347 * 18 16 14 22 22 C 1.52997 * 109.47519 * 175.00001 * 11 10 9 23 23 C 1.53003 * 117.50025 * 248.74690 * 22 11 10 24 24 C 1.52997 * 117.50117 * 180.08541 * 22 11 10 25 25 H 1.09000 * 109.46592 * 270.00011 * 1 2 3 26 26 H 1.08997 * 109.47005 * 29.99632 * 1 2 3 27 27 H 1.08996 * 109.47343 * 150.00431 * 1 2 3 28 28 H 1.09000 * 109.47577 * 59.99854 * 4 2 1 29 29 H 1.09002 * 109.47066 * 299.99343 * 4 2 1 30 30 H 1.09000 * 109.46966 * 59.99627 * 5 4 2 31 31 H 1.09002 * 109.46807 * 299.99649 * 5 4 2 32 32 H 1.08998 * 109.46837 * 59.99832 * 6 5 4 33 33 H 1.09002 * 109.46926 * 299.99636 * 6 5 4 34 34 H 0.97000 * 119.99339 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47196 * 299.99538 * 10 9 7 36 36 H 1.09006 * 109.47678 * 59.99732 * 10 9 7 37 37 H 0.97000 * 119.99498 * 24.99864 * 13 11 10 38 38 H 0.97003 * 119.99947 * 179.97438 * 17 16 14 39 39 H 1.09006 * 115.54757 * 34.41089 * 22 11 10 40 40 H 1.09001 * 117.49296 * 359.97438 * 23 22 11 41 41 H 1.08991 * 117.50309 * 145.01577 * 23 22 11 42 42 H 1.08999 * 117.49717 * 214.97918 * 24 22 11 43 43 H 1.08993 * 117.49842 * 359.97328 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0256 -0.0011 6 6 4.5297 -2.3506 -0.0011 7 6 6.0113 -2.0752 -0.0022 8 8 6.4156 -0.9318 -0.0035 9 7 6.8872 -3.0997 -0.0018 10 6 8.3274 -2.8320 -0.0090 11 6 9.0924 -4.1570 -0.0076 12 1 8.9020 -4.6855 0.9265 13 7 8.6457 -4.9801 -1.1341 14 6 8.7684 -6.3429 -1.0776 15 1 9.1949 -6.8107 -0.2026 16 6 8.3455 -7.1226 -2.1452 17 7 8.4639 -8.4324 -2.0911 18 14 7.6084 -6.3133 -3.6588 19 1 8.6878 -6.0073 -4.6317 20 1 6.6255 -7.2344 -4.2836 21 1 6.9260 -5.0547 -3.2645 22 6 10.5914 -3.8807 -0.1408 23 6 11.2731 -4.2960 -1.4460 24 6 11.5329 -5.0865 -0.1612 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5137 28 1 1.9971 -1.8764 -0.8908 29 1 1.9972 -1.8770 0.8892 30 1 4.0284 -0.4542 0.8889 31 1 4.0277 -0.4539 -0.8911 32 1 4.2661 -2.9223 -0.8908 33 1 4.2667 -2.9220 0.8892 34 1 6.5637 -4.0142 -0.0012 35 1 8.5870 -2.2640 -0.9024 36 1 8.5946 -2.2568 0.8776 37 1 8.2628 -4.5598 -1.9200 38 1 8.1681 -8.9774 -2.8370 39 1 10.9470 -2.9725 0.3460 40 1 10.6537 -4.7665 -2.2097 41 1 12.0774 -3.6614 -1.8178 42 1 12.5082 -4.9715 0.3118 43 1 11.0846 -6.0766 -0.0793 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690141947.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -73.189682 kcal Electronic energy + Delta-G solvation = -21981.674403 eV Core-core repulsion = 18640.833450 eV Total energy + Delta-G solvation = -3340.840952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89859 -40.33998 -39.24815 -35.99232 -35.24681 -35.07036 -33.00656 -31.69206 -30.40997 -28.55980 -25.37854 -24.37701 -23.21171 -22.76569 -21.34565 -20.71387 -20.45702 -19.57927 -18.00700 -17.19860 -17.09615 -16.80104 -16.44715 -16.39147 -16.15145 -15.82535 -15.52934 -15.14259 -14.72898 -14.53487 -14.36736 -14.17368 -13.35593 -13.22693 -13.01490 -12.95200 -12.79049 -12.69058 -12.59450 -12.50614 -12.37877 -12.12694 -12.03851 -11.72139 -11.62359 -11.09692 -11.06735 -10.82946 -10.66515 -10.49896 -10.01725 -9.31812 -7.95552 -5.28794 1.07438 1.39226 1.43125 1.48874 1.69597 2.29076 2.51579 3.07091 3.21794 3.37525 3.61056 3.76734 3.88644 4.06405 4.10451 4.15915 4.24139 4.30125 4.45619 4.47147 4.54483 4.58883 4.64560 4.73209 4.73869 4.80720 4.86174 4.90886 4.95665 5.14855 5.17203 5.20515 5.26136 5.35516 5.44856 5.56968 5.59782 5.88369 6.26886 6.62599 6.65284 7.12447 7.30257 7.86282 8.05692 9.25540 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.003683 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.117598 B = 7601.427985 C = 8700.996211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.349 3.651 3 O -0.516 6.516 4 C -0.169 4.169 5 C -0.093 4.093 6 C -0.134 4.134 7 C 0.502 3.498 8 O -0.593 6.593 9 N -0.717 5.717 10 C 0.124 3.876 11 C 0.199 3.801 12 H 0.063 0.937 13 N -0.739 5.739 14 C -0.206 4.206 15 H 0.065 0.935 16 C -0.055 4.055 17 N -0.982 5.982 18 Si 0.940 3.060 19 H -0.292 1.292 20 H -0.301 1.301 21 H -0.251 1.251 22 C -0.166 4.166 23 C -0.172 4.172 24 C -0.175 4.175 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.413 0.587 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.364 0.636 38 H 0.254 0.746 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.100 0.900 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.940 11.852 5.531 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.229 3.771 3 O -0.394 6.394 4 C -0.206 4.206 5 C -0.131 4.131 6 C -0.173 4.173 7 C 0.290 3.710 8 O -0.474 6.474 9 N -0.369 5.369 10 C -0.001 4.001 11 C 0.090 3.910 12 H 0.081 0.919 13 N -0.383 5.383 14 C -0.337 4.337 15 H 0.083 0.917 16 C -0.246 4.246 17 N -0.633 5.633 18 Si 0.769 3.231 19 H -0.220 1.220 20 H -0.228 1.228 21 H -0.175 1.175 22 C -0.187 4.187 23 C -0.209 4.209 24 C -0.212 4.212 25 H 0.129 0.871 26 H 0.095 0.905 27 H 0.132 0.868 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.197 0.803 38 H 0.063 0.937 39 H 0.137 0.863 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.302 12.986 5.628 18.752 hybrid contribution -0.082 -0.454 -1.274 1.355 sum -12.384 12.532 4.353 18.149 Atomic orbital electron populations 1.22319 0.91624 1.05788 1.05926 1.25372 0.93692 0.90078 0.67959 1.90443 1.73358 1.37212 1.38384 1.22260 0.93480 0.97315 1.07564 1.21042 0.94497 0.95635 1.01943 1.21734 0.88635 0.99981 1.06977 1.21418 0.90457 0.84308 0.74800 1.90674 1.81476 1.23161 1.52098 1.46079 1.06477 1.10263 1.74072 1.21464 0.80020 0.96692 1.01879 1.20079 0.90345 0.89481 0.91091 0.91868 1.42772 1.74699 1.02722 1.18063 1.18880 1.31711 0.81965 1.01132 0.91713 1.25258 1.03062 0.95429 1.00871 1.69854 1.55484 1.04845 1.33106 0.85649 0.78175 0.78321 0.80948 1.21963 1.22824 1.17513 1.23028 0.94942 0.98852 1.01866 1.22798 1.02607 1.03664 0.91849 1.22826 1.00111 0.96230 1.02027 0.87060 0.90545 0.86839 0.85515 0.84993 0.93284 0.93876 0.86749 0.85710 0.75030 0.92688 0.90302 0.80265 0.93658 0.86273 0.90430 0.88571 0.88165 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.61 10.25 71.24 0.73 -0.87 16 2 C 0.35 5.76 7.27 29.10 0.21 5.97 16 3 O -0.52 -14.42 16.72 -1.45 -0.02 -14.45 16 4 C -0.17 -2.04 5.62 29.85 0.17 -1.87 16 5 C -0.09 -2.00 3.79 30.59 0.12 -1.88 16 6 C -0.13 -2.56 5.70 29.85 0.17 -2.39 16 7 C 0.50 14.52 7.83 87.65 0.69 15.20 16 8 O -0.59 -22.19 15.98 -3.04 -0.05 -22.24 16 9 N -0.72 -20.35 5.39 -463.05 -2.50 -22.85 16 10 C 0.12 3.72 5.22 86.38 0.45 4.17 16 11 C 0.20 6.59 2.86 44.99 0.13 6.72 16 12 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 13 N -0.74 -29.77 2.88 -322.94 -0.93 -30.70 16 14 C -0.21 -10.30 8.64 84.03 0.73 -9.58 16 15 H 0.06 3.60 7.14 -2.91 -0.02 3.58 16 16 C -0.05 -2.96 5.50 84.86 0.47 -2.49 16 17 N -0.98 -59.27 13.97 21.65 0.30 -58.97 16 18 Si 0.94 42.77 27.74 68.60 1.90 44.67 16 19 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 22 C -0.17 -5.18 5.70 -10.79 -0.06 -5.24 16 23 C -0.17 -5.92 9.74 30.62 0.30 -5.62 16 24 C -0.17 -6.00 9.87 30.62 0.30 -5.69 16 25 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.11 0.29 8.12 -2.39 -0.02 0.27 16 28 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 1.28 8.06 -2.39 -0.02 1.27 16 31 H 0.04 1.18 8.06 -2.39 -0.02 1.16 16 32 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.41 11.24 8.13 -92.71 -0.75 10.49 16 35 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 36 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 37 H 0.36 14.76 5.66 -92.71 -0.52 14.23 16 38 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 39 H 0.12 3.09 8.11 -2.38 -0.02 3.07 16 40 H 0.08 3.20 6.68 -2.39 -0.02 3.18 16 41 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.07 3.06 6.22 -2.39 -0.01 3.05 16 Total: -1.00 -74.10 355.40 2.77 -71.33 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.33 Total: 36.80 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: 4.39 Total: -3.60 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.12 Total: -112.52 kcal Atomic # 8 Polarization: -36.61 SS G_CDS: -0.07 Total: -36.68 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.90 Total: 44.67 kcal Total: -74.10 2.77 -71.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690141947.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.859 kcal (2) G-P(sol) polarization free energy of solvation -74.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds