Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20757 * 120.00102 * 2 1 4 4 C 1.50697 * 119.99881 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47011 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47312 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47379 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99728 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99866 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99841 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47354 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47504 * 64.99413 * 11 10 9 13 13 N 1.46505 * 109.47041 * 304.99803 * 11 10 9 14 14 C 1.36934 * 120.00296 * 155.00197 * 13 11 10 15 15 H 1.08001 * 119.99507 * 359.97438 * 14 13 11 16 16 C 1.38805 * 120.00216 * 180.02562 * 14 13 11 17 17 N 1.31630 * 120.00105 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00371 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46723 * 59.99835 * 18 16 14 20 20 H 1.48495 * 109.47253 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47021 * 300.00077 * 18 16 14 22 22 C 1.53003 * 109.47289 * 184.99978 * 11 10 9 23 23 C 1.53001 * 117.51964 * 116.28130 * 22 11 10 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 11 25 25 H 1.09002 * 109.46921 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47008 * 299.99813 * 1 2 3 27 27 H 1.08994 * 109.47468 * 60.00330 * 1 2 3 28 28 H 1.08994 * 109.47440 * 59.99802 * 4 2 1 29 29 H 1.08995 * 109.47429 * 299.99482 * 4 2 1 30 30 H 1.09003 * 109.47232 * 59.99820 * 5 4 2 31 31 H 1.09006 * 109.47107 * 299.99929 * 5 4 2 32 32 H 1.08994 * 109.47427 * 59.99653 * 6 5 4 33 33 H 1.09004 * 109.47324 * 299.99745 * 6 5 4 34 34 H 0.97000 * 120.00462 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47188 * 59.99771 * 10 9 7 36 36 H 1.09006 * 109.47109 * 299.99906 * 10 9 7 37 37 H 0.97005 * 119.99760 * 334.99871 * 13 11 10 38 38 H 0.96994 * 120.00244 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54973 * 330.57913 * 22 11 10 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 11 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 11 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5297 -2.3505 -0.0023 7 6 6.0114 -2.0751 -0.0035 8 8 6.4156 -0.9317 -0.0038 9 7 6.8872 -3.0995 -0.0042 10 6 8.3275 -2.8318 -0.0047 11 6 9.0925 -4.1568 -0.0061 12 1 8.8976 -4.6880 -0.9377 13 7 8.6512 -4.9767 1.1251 14 6 8.7738 -6.3395 1.0720 15 1 9.1954 -6.8099 0.1960 16 6 8.3552 -7.1163 2.1434 17 7 7.8408 -6.5429 3.2108 18 14 8.5217 -8.9754 2.0707 19 1 9.9518 -9.3380 1.9018 20 1 8.0056 -9.5683 3.3306 21 1 7.7395 -9.4979 0.9216 22 6 10.5921 -3.8801 0.1191 23 6 11.3042 -4.3964 1.3710 24 6 11.5418 -5.0757 0.0208 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.9972 -1.8763 -0.8907 29 1 1.9973 -1.8770 0.8891 30 1 4.0284 -0.4541 0.8889 31 1 4.0277 -0.4537 -0.8911 32 1 4.2660 -2.9215 -0.8925 33 1 4.2669 -2.9227 0.8874 34 1 6.5639 -4.0141 -0.0035 35 1 8.5913 -2.2605 0.8853 36 1 8.5905 -2.2600 -0.8947 37 1 8.2722 -4.5541 1.9117 38 1 7.5487 -7.0856 3.9597 39 1 10.9316 -2.9320 -0.2981 40 1 12.1122 -3.7880 1.7774 41 1 10.7043 -4.9330 2.1059 42 1 11.0982 -6.0594 -0.1327 43 1 12.5061 -4.9141 -0.4611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690141949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = -55.595191 kcal Electronic energy + Delta-G solvation = -21876.281213 eV Core-core repulsion = 18536.203215 eV Total energy + Delta-G solvation = -3340.077998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.76845 -39.22769 -37.61759 -34.60533 -34.15148 -33.25209 -31.13742 -30.72424 -28.72306 -27.38646 -23.86841 -23.02494 -21.84558 -21.43402 -19.99475 -19.72509 -19.00473 -17.40296 -16.69347 -16.19965 -15.91484 -15.42123 -15.25242 -15.05852 -14.80997 -14.60478 -14.04404 -13.68230 -13.45379 -13.01367 -12.89981 -12.75289 -12.50358 -12.13219 -11.94245 -11.77858 -11.45074 -11.26807 -11.18840 -10.89531 -10.85667 -10.78439 -10.51750 -10.16774 -9.86093 -9.73262 -9.57968 -9.37229 -9.16576 -8.99191 -8.57161 -7.09080 -5.86281 -3.16592 1.79428 3.02000 3.36651 3.42479 3.43322 3.54480 3.93928 4.47263 4.62718 4.67804 4.86413 4.87405 5.03974 5.11647 5.18724 5.36870 5.38734 5.43144 5.48863 5.49590 5.59059 5.67008 5.73383 5.78905 5.85844 5.97697 6.05718 6.10911 6.11324 6.33783 6.35826 6.47626 6.66205 6.75812 6.91245 6.99358 7.30541 7.34865 7.62655 7.99522 8.30947 8.64503 9.43186 9.97295 10.33789 11.35006 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003441 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.848583 B = 8134.152977 C = 9399.493636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.456 6.456 4 C -0.174 4.174 5 C -0.095 4.095 6 C -0.141 4.141 7 C 0.508 3.492 8 O -0.555 6.555 9 N -0.714 5.714 10 C 0.119 3.881 11 C 0.192 3.808 12 H 0.056 0.944 13 N -0.717 5.717 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.008 4.008 17 N -0.929 5.929 18 Si 0.903 3.097 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.178 4.178 23 C -0.162 4.162 24 C -0.177 4.177 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.410 0.590 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.193 6.625 -7.306 14.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.227 3.773 3 O -0.330 6.330 4 C -0.212 4.212 5 C -0.133 4.133 6 C -0.181 4.181 7 C 0.294 3.706 8 O -0.433 6.433 9 N -0.366 5.366 10 C -0.006 4.006 11 C 0.081 3.919 12 H 0.074 0.926 13 N -0.359 5.359 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.213 1.213 22 C -0.199 4.199 23 C -0.199 4.199 24 C -0.214 4.214 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.140 0.860 42 H 0.116 0.884 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.564 7.797 -7.331 14.353 hybrid contribution -0.084 -1.577 0.332 1.613 sum -9.648 6.220 -6.999 13.444 Atomic orbital electron populations 1.22281 0.94751 1.04559 1.04619 1.24674 0.91816 0.90523 0.70308 1.90444 1.71906 1.35275 1.35351 1.22220 0.96809 0.97382 1.04768 1.21132 0.91406 0.96167 1.04620 1.21663 0.92263 0.99653 1.04552 1.20594 0.88697 0.85151 0.76155 1.90677 1.80555 1.21580 1.50523 1.46013 1.06647 1.09969 1.73940 1.21561 0.79649 0.97996 1.01381 1.19996 0.89393 0.89610 0.92855 0.92586 1.42476 1.73693 1.03168 1.16549 1.19121 1.34679 0.82501 1.00789 0.91182 1.24709 1.01532 0.97684 0.96531 1.69651 1.47192 1.34340 1.06453 0.86340 0.77735 0.85856 0.76658 1.21274 1.21794 1.21335 1.23088 0.96066 0.96899 1.03881 1.22944 1.01593 1.03170 0.92176 1.22812 0.98930 0.97922 1.01742 0.90000 0.89183 0.89232 0.88284 0.88120 0.90685 0.90841 0.89084 0.88618 0.75399 0.91820 0.92003 0.77924 0.93407 0.89629 0.91317 0.86008 0.88355 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.18 10.33 36.01 0.37 -0.81 16 2 C 0.35 3.32 7.27 -29.04 -0.21 3.11 16 3 O -0.46 -6.44 16.72 6.00 0.10 -6.34 16 4 C -0.17 -1.42 5.55 -27.88 -0.15 -1.57 16 5 C -0.10 -1.14 3.79 -26.73 -0.10 -1.25 16 6 C -0.14 -1.67 5.70 -27.88 -0.16 -1.82 16 7 C 0.51 8.24 7.83 -10.98 -0.09 8.15 16 8 O -0.55 -11.01 15.98 5.56 0.09 -10.92 16 9 N -0.71 -11.59 5.39 -60.29 -0.32 -11.92 16 10 C 0.12 2.03 5.19 -4.04 -0.02 2.01 16 11 C 0.19 3.51 2.83 -67.93 -0.19 3.32 16 12 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 13 N -0.72 -15.74 3.20 -53.43 -0.17 -15.91 16 14 C -0.24 -5.89 8.10 -15.06 -0.12 -6.01 16 15 H 0.07 1.70 6.89 -52.49 -0.36 1.34 16 16 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 17 N -0.93 -25.87 13.06 55.49 0.72 -25.14 16 18 Si 0.90 21.00 29.55 -169.99 -5.02 15.98 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.18 -3.11 5.73 -90.61 -0.52 -3.63 16 23 C -0.16 -3.05 9.69 -26.73 -0.26 -3.31 16 24 C -0.18 -3.13 9.88 -26.73 -0.26 -3.39 16 25 H 0.08 0.30 8.00 -51.93 -0.42 -0.12 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 31 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.41 6.57 8.14 -40.82 -0.33 6.24 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.39 9.36 7.80 -40.82 -0.32 9.04 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.12 2.76 6.42 -51.93 -0.33 2.42 16 42 H 0.10 1.91 6.55 -51.93 -0.34 1.57 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -30.84 358.42 -8.16 -38.99 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -7.14 Total: 15.37 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.81 Total: -5.51 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.23 Total: -52.97 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.19 Total: -17.27 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.84 -8.16 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690141949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.600 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds