Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20757 * 120.00102 * 2 1 4 4 C 1.50697 * 119.99881 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47011 * 179.97438 * 4 2 1 6 6 C 1.52995 * 109.47312 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47379 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99728 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99866 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99841 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47354 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.47504 * 64.99413 * 11 10 9 13 13 N 1.46505 * 109.47041 * 304.99803 * 11 10 9 14 14 C 1.36934 * 120.00296 * 155.00197 * 13 11 10 15 15 H 1.08001 * 119.99507 * 359.97438 * 14 13 11 16 16 C 1.38805 * 120.00216 * 180.02562 * 14 13 11 17 17 N 1.31630 * 120.00105 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00371 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46723 * 59.99835 * 18 16 14 20 20 H 1.48495 * 109.47253 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47021 * 300.00077 * 18 16 14 22 22 C 1.53003 * 109.47289 * 184.99978 * 11 10 9 23 23 C 1.53001 * 117.51964 * 116.28130 * 22 11 10 24 24 C 1.52999 * 60.00190 * 107.47982 * 23 22 11 25 25 H 1.09002 * 109.46921 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47008 * 299.99813 * 1 2 3 27 27 H 1.08994 * 109.47468 * 60.00330 * 1 2 3 28 28 H 1.08994 * 109.47440 * 59.99802 * 4 2 1 29 29 H 1.08995 * 109.47429 * 299.99482 * 4 2 1 30 30 H 1.09003 * 109.47232 * 59.99820 * 5 4 2 31 31 H 1.09006 * 109.47107 * 299.99929 * 5 4 2 32 32 H 1.08994 * 109.47427 * 59.99653 * 6 5 4 33 33 H 1.09004 * 109.47324 * 299.99745 * 6 5 4 34 34 H 0.97000 * 120.00462 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47188 * 59.99771 * 10 9 7 36 36 H 1.09006 * 109.47109 * 299.99906 * 10 9 7 37 37 H 0.97005 * 119.99760 * 334.99871 * 13 11 10 38 38 H 0.96994 * 120.00244 * 180.02562 * 17 16 14 39 39 H 1.09002 * 115.54973 * 330.57913 * 22 11 10 40 40 H 1.09001 * 117.49733 * 214.97413 * 23 22 11 41 41 H 1.08995 * 117.49577 * 359.97438 * 23 22 11 42 42 H 1.09004 * 117.50150 * 252.51496 * 24 23 22 43 43 H 1.09004 * 117.49681 * 107.48417 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5297 -2.3505 -0.0023 7 6 6.0114 -2.0751 -0.0035 8 8 6.4156 -0.9317 -0.0038 9 7 6.8872 -3.0995 -0.0042 10 6 8.3275 -2.8318 -0.0047 11 6 9.0925 -4.1568 -0.0061 12 1 8.8976 -4.6880 -0.9377 13 7 8.6512 -4.9767 1.1251 14 6 8.7738 -6.3395 1.0720 15 1 9.1954 -6.8099 0.1960 16 6 8.3552 -7.1163 2.1434 17 7 7.8408 -6.5429 3.2108 18 14 8.5217 -8.9754 2.0707 19 1 9.9518 -9.3380 1.9018 20 1 8.0056 -9.5683 3.3306 21 1 7.7395 -9.4979 0.9216 22 6 10.5921 -3.8801 0.1191 23 6 11.3042 -4.3964 1.3710 24 6 11.5418 -5.0757 0.0208 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.9972 -1.8763 -0.8907 29 1 1.9973 -1.8770 0.8891 30 1 4.0284 -0.4541 0.8889 31 1 4.0277 -0.4537 -0.8911 32 1 4.2660 -2.9215 -0.8925 33 1 4.2669 -2.9227 0.8874 34 1 6.5639 -4.0141 -0.0035 35 1 8.5913 -2.2605 0.8853 36 1 8.5905 -2.2600 -0.8947 37 1 8.2722 -4.5541 1.9117 38 1 7.5487 -7.0856 3.9597 39 1 10.9316 -2.9320 -0.2981 40 1 12.1122 -3.7880 1.7774 41 1 10.7043 -4.9330 2.1059 42 1 11.0982 -6.0594 -0.1327 43 1 12.5061 -4.9141 -0.4611 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690141949.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = -75.438147 kcal Electronic energy + Delta-G solvation = -21877.141669 eV Core-core repulsion = 18536.203215 eV Total energy + Delta-G solvation = -3340.938453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85570 -40.31364 -39.13402 -35.94536 -35.22215 -35.02408 -32.64132 -31.62733 -30.08438 -28.46636 -25.58916 -24.42178 -23.13126 -22.75579 -21.31439 -20.58056 -20.37531 -19.20561 -17.98924 -17.14718 -17.07319 -16.70758 -16.38542 -16.31756 -16.12412 -15.79694 -15.45516 -15.18588 -14.81484 -14.46552 -14.29311 -13.69050 -13.32671 -13.12098 -12.92277 -12.84175 -12.73893 -12.67217 -12.58894 -12.56588 -12.36517 -12.13957 -11.95029 -11.70812 -11.59477 -11.05960 -10.98190 -10.78508 -10.62891 -10.47693 -9.96520 -8.97259 -7.85992 -5.14025 1.08292 1.52091 1.53813 1.58493 1.73123 2.34322 2.60599 3.13102 3.23602 3.48588 3.78401 3.89193 4.00057 4.08008 4.12935 4.18195 4.28029 4.34343 4.49083 4.52160 4.58007 4.59344 4.67542 4.74359 4.76366 4.82829 4.90227 4.95034 4.96595 5.18357 5.19640 5.25138 5.26716 5.37180 5.42390 5.60577 5.67173 5.70111 6.33573 6.65887 6.68245 7.34348 7.42241 8.12328 8.38653 9.36001 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003441 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.848583 B = 8134.152977 C = 9399.493636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.350 3.650 3 O -0.516 6.516 4 C -0.169 4.169 5 C -0.092 4.092 6 C -0.131 4.131 7 C 0.501 3.499 8 O -0.597 6.597 9 N -0.712 5.712 10 C 0.127 3.873 11 C 0.195 3.805 12 H 0.062 0.938 13 N -0.719 5.719 14 C -0.219 4.219 15 H 0.075 0.925 16 C -0.065 4.065 17 N -0.964 5.964 18 Si 0.958 3.042 19 H -0.287 1.287 20 H -0.304 1.304 21 H -0.278 1.278 22 C -0.171 4.171 23 C -0.174 4.174 24 C -0.167 4.167 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.126 0.874 30 H 0.041 0.959 31 H 0.049 0.951 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.413 0.587 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.374 0.626 38 H 0.247 0.753 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.036 5.599 -8.967 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.230 3.770 3 O -0.394 6.394 4 C -0.206 4.206 5 C -0.131 4.131 6 C -0.171 4.171 7 C 0.289 3.711 8 O -0.478 6.478 9 N -0.363 5.363 10 C 0.002 3.998 11 C 0.086 3.914 12 H 0.079 0.921 13 N -0.359 5.359 14 C -0.351 4.351 15 H 0.093 0.907 16 C -0.258 4.258 17 N -0.615 5.615 18 Si 0.789 3.211 19 H -0.214 1.214 20 H -0.230 1.230 21 H -0.204 1.204 22 C -0.193 4.193 23 C -0.212 4.212 24 C -0.204 4.204 25 H 0.130 0.870 26 H 0.111 0.889 27 H 0.114 0.886 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.143 0.857 33 H 0.130 0.870 34 H 0.249 0.751 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.206 0.794 38 H 0.056 0.944 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.408 6.742 -9.041 15.347 hybrid contribution 0.235 -1.212 0.796 1.469 sum -10.174 5.530 -8.245 14.215 Atomic orbital electron populations 1.22289 0.91544 1.06722 1.05006 1.25377 0.93710 0.90036 0.67908 1.90440 1.73332 1.37222 1.38440 1.22279 0.93424 0.97397 1.07503 1.21038 0.94561 0.95601 1.01861 1.21701 0.88608 0.99936 1.06810 1.21430 0.90525 0.84308 0.74806 1.90660 1.81537 1.23233 1.52402 1.46020 1.06369 1.10185 1.73703 1.21419 0.80271 0.97054 1.01086 1.20103 0.90175 0.89630 0.91535 0.92061 1.42519 1.73660 1.02701 1.17055 1.19365 1.32033 0.83581 1.00129 0.90707 1.25299 1.02810 1.00905 0.96741 1.69794 1.49490 1.35083 1.07084 0.85451 0.77411 0.82131 0.76148 1.21351 1.23038 1.20381 1.23087 0.95186 0.98087 1.02894 1.22791 1.02254 1.04094 0.92022 1.22821 1.00145 0.96859 1.00616 0.86975 0.88855 0.88594 0.84921 0.85584 0.94042 0.93247 0.85734 0.87020 0.75069 0.93626 0.90729 0.79373 0.94389 0.87077 0.89400 0.90096 0.90295 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.80 10.33 71.24 0.74 -1.06 16 2 C 0.35 6.24 7.27 29.10 0.21 6.45 16 3 O -0.52 -15.09 16.72 -1.44 -0.02 -15.12 16 4 C -0.17 -2.34 5.55 29.85 0.17 -2.17 16 5 C -0.09 -2.19 3.79 30.59 0.12 -2.07 16 6 C -0.13 -2.86 5.70 29.85 0.17 -2.69 16 7 C 0.50 16.06 7.83 87.66 0.69 16.75 16 8 O -0.60 -24.19 15.98 -3.01 -0.05 -24.24 16 9 N -0.71 -22.56 5.39 -463.06 -2.50 -25.05 16 10 C 0.13 4.23 5.19 86.38 0.45 4.68 16 11 C 0.19 6.89 2.83 44.99 0.13 7.02 16 12 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 13 N -0.72 -31.45 3.20 -322.94 -1.03 -32.48 16 14 C -0.22 -10.66 8.10 84.03 0.68 -9.98 16 15 H 0.08 3.54 6.89 -2.91 -0.02 3.52 16 16 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 17 N -0.96 -54.58 13.06 21.65 0.28 -54.29 16 18 Si 0.96 43.22 29.55 68.60 2.03 45.25 16 19 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 C -0.17 -5.67 5.73 -10.79 -0.06 -5.73 16 23 C -0.17 -6.41 9.69 30.59 0.30 -6.11 16 24 C -0.17 -5.56 9.88 30.60 0.30 -5.25 16 25 H 0.11 0.34 8.00 -2.39 -0.02 0.33 16 26 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.04 1.24 8.06 -2.39 -0.02 1.22 16 31 H 0.05 1.39 8.06 -2.38 -0.02 1.37 16 32 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.41 12.72 8.14 -92.71 -0.75 11.96 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.37 18.37 7.80 -92.70 -0.72 17.65 16 38 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.11 3.17 8.08 -2.39 -0.02 3.16 16 40 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 41 H 0.08 3.71 6.42 -2.39 -0.02 3.69 16 42 H 0.08 2.94 6.55 -2.39 -0.02 2.93 16 43 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 Total: -1.00 -69.99 358.42 2.59 -67.41 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -0.47 Total: 41.64 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 4.35 Total: -3.11 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.25 Total: -111.83 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.07 Total: -39.36 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -69.99 2.59 -67.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690141949.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.031 kcal (2) G-P(sol) polarization free energy of solvation -69.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds