Wall clock time and date at job start Tue Mar 31 2020 06:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.47194 * 2 1 4 4 C 1.42904 * 114.00078 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47408 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47319 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99553 * 0.27597 * 6 5 4 8 8 N 1.34773 * 119.99778 * 180.02562 * 6 5 4 9 9 C 1.47160 * 120.70602 * 180.02562 * 8 6 5 10 10 C 1.53885 * 108.03271 * 132.75851 * 9 8 6 11 11 H 1.08998 * 112.09863 * 181.91195 * 10 9 8 12 12 C 1.54545 * 107.82551 * 305.86655 * 10 9 8 13 13 C 1.55859 * 104.09532 * 89.28061 * 12 10 9 14 14 C 1.54545 * 105.00008 * 359.97438 * 13 12 10 15 15 H 1.09001 * 112.18399 * 146.42232 * 14 13 12 16 16 C 1.47158 * 120.71102 * 359.72376 * 8 6 5 17 17 N 1.48309 * 104.35519 * 24.71431 * 14 13 12 18 18 C 1.36937 * 128.07712 * 139.07936 * 17 14 13 19 19 H 1.08000 * 120.00064 * 194.95870 * 18 17 14 20 20 C 1.38809 * 120.00004 * 14.96427 * 18 17 14 21 21 N 1.31623 * 120.00174 * 9.26829 * 20 18 17 22 22 Si 1.86807 * 120.00188 * 189.27176 * 20 18 17 23 23 H 1.48497 * 109.46986 * 89.99665 * 22 20 18 24 24 H 1.48500 * 109.46996 * 209.99703 * 22 20 18 25 25 H 1.48499 * 109.46846 * 329.99848 * 22 20 18 26 26 H 1.09003 * 109.46936 * 299.99953 * 1 2 3 27 27 H 1.09000 * 109.47047 * 59.99592 * 1 2 3 28 28 H 1.08993 * 109.47109 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46936 * 240.00047 * 2 1 3 30 30 H 1.09004 * 109.47181 * 119.99671 * 2 1 3 31 31 H 1.09004 * 109.47331 * 59.99838 * 4 3 2 32 32 H 1.08997 * 109.46765 * 300.00122 * 4 3 2 33 33 H 1.09004 * 109.46832 * 59.99746 * 5 4 3 34 34 H 1.09001 * 109.46943 * 300.00484 * 5 4 3 35 35 H 1.09010 * 109.75084 * 252.38920 * 9 8 6 36 36 H 1.08996 * 109.75362 * 13.06841 * 9 8 6 37 37 H 1.09004 * 110.36311 * 207.91286 * 12 10 9 38 38 H 1.08997 * 110.36803 * 330.23037 * 12 10 9 39 39 H 1.08997 * 110.28150 * 241.09370 * 13 12 10 40 40 H 1.09001 * 110.39094 * 118.92311 * 13 12 10 41 41 H 1.08999 * 109.75006 * 346.87455 * 16 8 6 42 42 H 1.08999 * 109.75334 * 107.61288 * 16 8 6 43 43 H 0.97000 * 120.00039 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 3.8255 2.9384 -0.0012 6 6 5.3278 3.0574 -0.0012 7 8 6.0151 2.0581 -0.0058 8 7 5.9073 4.2741 -0.0011 9 6 7.3728 4.4084 -0.0017 10 6 7.7561 5.4414 -1.0759 11 1 8.8357 5.5683 -1.1561 12 6 7.1206 4.9931 -2.4114 13 6 5.7145 5.6653 -2.4073 14 6 5.6480 6.4455 -1.0749 15 1 5.0687 7.3644 -1.1645 16 6 5.0883 5.4967 -0.0072 17 7 7.0667 6.7085 -0.7316 18 6 7.6127 7.8540 -0.2171 19 1 8.6827 7.9991 -0.2382 20 6 6.7909 8.8288 0.3319 21 7 5.5129 8.5798 0.5252 22 14 7.4985 10.4941 0.7962 23 1 7.3983 11.4154 -0.3641 24 1 6.7358 11.0544 1.9405 25 1 8.9240 10.3362 1.1812 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9767 -0.8908 32 1 3.8340 0.9764 0.8891 33 1 3.4230 3.4222 0.8888 34 1 3.4223 3.4217 -0.8911 35 1 7.7117 4.7509 0.9762 36 1 7.8307 3.4470 -0.2340 37 1 7.7136 5.3516 -3.2529 38 1 7.0324 3.9072 -2.4439 39 1 4.9328 4.9065 -2.4418 40 1 5.6172 6.3477 -3.2517 41 1 4.0543 5.2462 -0.2441 42 1 5.1369 5.9775 0.9698 43 1 4.9386 9.2611 0.9085 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691809892.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:00 Heat of formation + Delta-G solvation = -68.570775 kcal Electronic energy + Delta-G solvation = -23397.381459 eV Core-core repulsion = 20056.740797 eV Total energy + Delta-G solvation = -3340.640662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59996 -39.61611 -38.74400 -35.38882 -34.27993 -33.47292 -32.24664 -31.08159 -30.93783 -27.85887 -25.85157 -25.39843 -24.15824 -23.65218 -21.40866 -21.05926 -20.12482 -18.79232 -17.90210 -17.53055 -17.22398 -16.80895 -16.59140 -16.27252 -15.71671 -15.45374 -15.15376 -14.70384 -14.57288 -14.35026 -14.23357 -13.53760 -13.34451 -13.30206 -13.18197 -12.98986 -12.88130 -12.73617 -12.58283 -12.53177 -12.02900 -11.98633 -11.93135 -11.80345 -11.48252 -11.42688 -11.14225 -10.95607 -10.59624 -10.57810 -9.72020 -8.69779 -7.84524 -5.18920 1.50239 1.51850 1.58813 1.63727 1.97498 2.51757 2.79440 3.35024 3.50702 3.68847 3.98724 4.01914 4.08453 4.16227 4.19646 4.23826 4.35988 4.39538 4.42186 4.48939 4.51909 4.61133 4.72809 4.75471 4.79778 4.83033 4.93191 5.00833 5.03700 5.06449 5.08518 5.16391 5.30026 5.34892 5.36826 5.55946 5.62998 5.83880 6.22212 6.24854 6.56837 7.09570 7.17977 7.73427 8.52736 9.27010 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025439 B = 0.004165 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.423686 B = 6721.007076 C = 7239.803165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.406 6.406 4 C 0.088 3.912 5 C -0.131 4.131 6 C 0.514 3.486 7 O -0.590 6.590 8 N -0.590 5.590 9 C 0.108 3.892 10 C 0.129 3.871 11 H 0.081 0.919 12 C -0.114 4.114 13 C -0.127 4.127 14 C 0.162 3.838 15 H 0.090 0.910 16 C 0.116 3.884 17 N -0.605 5.605 18 C -0.235 4.235 19 H 0.074 0.926 20 C -0.050 4.050 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.289 1.289 24 H -0.297 1.297 25 H -0.276 1.276 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.041 0.959 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 -12.856 -3.419 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 O -0.327 6.327 4 C 0.011 3.989 5 C -0.170 4.170 6 C 0.304 3.696 7 O -0.473 6.473 8 N -0.321 5.321 9 C -0.017 4.017 10 C 0.021 3.979 11 H 0.099 0.901 12 C -0.153 4.153 13 C -0.166 4.166 14 C 0.054 3.946 15 H 0.108 0.892 16 C -0.008 4.008 17 N -0.326 5.326 18 C -0.364 4.364 19 H 0.092 0.908 20 C -0.245 4.245 21 N -0.580 5.580 22 Si 0.799 3.201 23 H -0.217 1.217 24 H -0.224 1.224 25 H -0.202 1.202 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.640 -12.950 -3.286 14.920 hybrid contribution 0.634 1.012 0.645 1.357 sum -6.007 -11.938 -2.641 13.623 Atomic orbital electron populations 1.21763 0.92438 1.03472 1.02833 1.22693 0.96577 0.82663 1.00865 1.87802 1.20880 1.28354 1.95629 1.21967 0.80731 0.95092 1.01087 1.21439 0.90817 0.98306 1.06485 1.20738 0.91019 0.82290 0.75563 1.90618 1.66297 1.36878 1.53490 1.48177 1.07273 1.06017 1.70665 1.22198 0.80295 0.99816 0.99388 1.22121 0.96864 0.85801 0.93103 0.90054 1.22656 0.96506 0.99156 0.96933 1.22834 0.96899 0.98723 0.98162 1.21745 0.86729 0.95683 0.90408 0.89236 1.22252 0.93747 0.83902 1.00921 1.45340 1.04474 1.09530 1.73288 1.19258 0.92192 0.93819 1.31147 0.90825 1.25443 0.96654 1.01881 1.00495 1.69966 1.04776 1.33747 1.49476 0.85223 0.77474 0.80534 0.76861 1.21658 1.22364 1.20160 0.92253 0.92081 0.88997 0.92589 0.92826 0.92729 0.93227 0.87588 0.86761 0.94053 0.89881 0.91550 0.91617 0.91222 0.92422 0.89014 0.93406 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.05 0.89 6.66 71.98 0.48 1.37 16 3 O -0.41 -10.07 10.34 -148.98 -1.54 -11.61 16 4 C 0.09 2.28 5.23 71.98 0.38 2.65 16 5 C -0.13 -3.55 4.45 29.85 0.13 -3.42 16 6 C 0.51 17.57 7.70 87.66 0.68 18.24 16 7 O -0.59 -22.95 15.45 -3.03 -0.05 -23.00 16 8 N -0.59 -21.64 2.27 -815.94 -1.85 -23.49 16 9 C 0.11 4.13 5.89 86.55 0.51 4.64 16 10 C 0.13 5.01 4.27 45.47 0.19 5.21 16 11 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 12 C -0.11 -3.83 6.31 32.11 0.20 -3.63 16 13 C -0.13 -4.44 6.22 32.11 0.20 -4.24 16 14 C 0.16 6.87 3.11 45.31 0.14 7.02 16 15 H 0.09 4.40 6.36 -2.39 -0.02 4.39 16 16 C 0.12 4.48 5.66 86.39 0.49 4.97 16 17 N -0.60 -28.28 2.81 -637.59 -1.79 -30.07 16 18 C -0.24 -12.27 10.37 84.03 0.87 -11.40 16 19 H 0.07 3.77 7.85 -2.91 -0.02 3.75 16 20 C -0.05 -2.63 5.42 84.86 0.46 -2.17 16 21 N -0.93 -50.39 10.42 21.65 0.23 -50.16 16 22 Si 0.97 43.52 29.56 68.60 2.03 45.55 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 24 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.05 1.41 8.10 -2.38 -0.02 1.39 16 32 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 33 H 0.11 2.77 8.07 -2.38 -0.02 2.75 16 34 H 0.11 2.80 7.58 -2.39 -0.02 2.78 16 35 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.08 3.04 7.11 -2.39 -0.02 3.02 16 37 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.07 2.11 7.84 -2.39 -0.02 2.09 16 39 H 0.07 2.15 7.83 -2.39 -0.02 2.13 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.09 2.98 6.09 -2.39 -0.01 2.96 16 42 H 0.05 2.21 7.82 -2.39 -0.02 2.19 16 43 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 Total: -1.00 -60.28 338.08 3.47 -56.81 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.97 Total: 18.15 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 5.47 Total: 17.83 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -3.42 Total: -103.73 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.59 Total: -34.61 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -60.28 3.47 -56.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691809892.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.757 kcal (2) G-P(sol) polarization free energy of solvation -60.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds