Wall clock time and date at job start Tue Mar 31 2020 06:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47289 * 2 1 4 4 C 1.42896 * 114.00083 * 179.97438 * 3 2 1 5 5 C 1.50707 * 109.47013 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00093 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99890 * 180.02562 * 5 4 3 8 8 C 1.48090 * 125.74336 * 180.02562 * 7 5 4 9 9 C 1.53850 * 103.41301 * 204.44722 * 8 7 5 10 10 H 1.09000 * 109.06380 * 73.84598 * 9 8 7 11 11 C 1.49841 * 114.34659 * 195.56589 * 9 8 7 12 12 C 1.51599 * 114.45570 * 66.00885 * 11 9 8 13 13 N 1.44533 * 112.99999 * 35.49757 * 12 11 9 14 14 C 1.36942 * 117.26602 * 150.68790 * 13 12 11 15 15 H 1.08004 * 119.99658 * 205.10872 * 14 13 12 16 16 C 1.38810 * 120.00238 * 25.10459 * 14 13 12 17 17 N 1.31621 * 119.99762 * 17.22933 * 16 14 13 18 18 Si 1.86790 * 119.99992 * 197.22670 * 16 14 13 19 19 H 1.48507 * 109.46958 * 269.99888 * 18 16 14 20 20 H 1.48495 * 109.47663 * 29.99969 * 18 16 14 21 21 H 1.48508 * 109.47109 * 150.00412 * 18 16 14 22 22 C 1.44402 * 125.46370 * 330.40015 * 13 12 11 23 23 C 1.52993 * 113.17967 * 34.94605 * 22 13 12 24 24 H 1.08996 * 112.80446 * 84.26543 * 23 22 13 25 25 C 1.47460 * 125.74230 * 0.02590 * 7 5 4 26 26 H 1.09004 * 109.47815 * 300.00474 * 1 2 3 27 27 H 1.09006 * 109.47226 * 60.00190 * 1 2 3 28 28 H 1.08999 * 109.47630 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47542 * 239.99477 * 2 1 3 30 30 H 1.09007 * 109.46775 * 119.99531 * 2 1 3 31 31 H 1.08998 * 109.47158 * 60.00329 * 4 3 2 32 32 H 1.08993 * 109.47595 * 299.99791 * 4 3 2 33 33 H 1.09003 * 110.63554 * 322.92852 * 8 7 5 34 34 H 1.09003 * 110.63218 * 85.96482 * 8 7 5 35 35 H 1.09004 * 108.47102 * 187.51384 * 11 9 8 36 36 H 1.08999 * 108.47659 * 304.89918 * 11 9 8 37 37 H 1.08997 * 108.96610 * 274.49690 * 12 11 9 38 38 H 1.09003 * 108.68912 * 156.30132 * 12 11 9 39 39 H 0.96997 * 119.99757 * 180.02562 * 17 16 14 40 40 H 1.09008 * 108.73948 * 155.89563 * 22 13 12 41 41 H 1.09001 * 108.74435 * 273.98511 * 22 13 12 42 42 H 1.09002 * 110.03942 * 62.78374 * 25 7 5 43 43 H 1.09001 * 110.08558 * 301.35653 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 8 2.9610 3.7729 -0.0005 7 7 5.1209 3.2663 -0.0002 8 6 5.6441 4.6517 -0.0004 9 6 7.0446 4.5043 -0.6198 10 1 6.9436 4.3326 -1.6915 11 6 7.9409 5.6864 -0.4089 12 6 8.3285 5.9302 1.0363 13 7 8.5061 4.7082 1.7872 14 6 9.3985 4.7339 2.8256 15 1 9.8736 3.8206 3.1520 16 6 9.6925 5.9339 3.4585 17 7 8.8935 6.9692 3.3100 18 14 11.2219 6.0791 4.5210 19 1 10.8896 5.7088 5.9202 20 1 12.2727 5.1663 4.0037 21 1 11.7193 7.4779 4.4840 22 6 7.8169 3.4640 1.5379 23 6 7.5508 3.2100 0.0528 24 1 8.4004 2.7557 -0.4569 25 6 6.2637 2.3343 -0.0003 26 1 -0.3635 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8339 0.9765 -0.8892 32 1 3.8333 0.9767 0.8907 33 1 5.0183 5.2986 -0.6153 34 1 5.7127 5.0365 1.0172 35 1 8.8491 5.5399 -0.9936 36 1 7.4336 6.5757 -0.7829 37 1 7.5519 6.5262 1.5156 38 1 9.2617 6.4931 1.0575 39 1 9.0992 7.8078 3.7520 40 1 8.4195 2.6450 1.9307 41 1 6.8639 3.4793 2.0669 42 1 6.2570 1.7353 -0.9109 43 1 6.2171 1.6849 0.8739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692049522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:49 Heat of formation + Delta-G solvation = -51.296450 kcal Electronic energy + Delta-G solvation = -23038.563189 eV Core-core repulsion = 19698.671599 eV Total energy + Delta-G solvation = -3339.891591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.31931 -38.71823 -37.43663 -35.47621 -32.85454 -31.70490 -31.42280 -30.29136 -28.48650 -26.77047 -25.27669 -23.89634 -22.99577 -21.85621 -21.56568 -19.29932 -18.14294 -17.23227 -16.68788 -16.64793 -16.31914 -15.61254 -15.34546 -14.91635 -14.49213 -13.93578 -13.66258 -13.59329 -13.29245 -13.05738 -12.92422 -12.72095 -12.64117 -12.36290 -12.20187 -11.71129 -11.55255 -11.45056 -11.25961 -10.92120 -10.74566 -10.62677 -10.24613 -10.14745 -9.96130 -9.88274 -9.72840 -9.61517 -9.42541 -8.48338 -8.40576 -6.68013 -5.73228 -3.22063 2.70443 2.74584 3.36895 3.44223 3.45992 3.78081 4.47000 4.51137 4.74263 4.78496 4.87831 4.99351 5.01030 5.04790 5.10857 5.17282 5.36185 5.40318 5.41755 5.56988 5.62192 5.66850 5.74507 5.84592 5.89004 5.99294 6.06060 6.18590 6.25969 6.36783 6.47187 6.55963 6.68709 6.80577 6.88947 6.90782 7.42152 7.64649 7.79325 7.84449 8.29069 8.47510 9.28163 9.95999 10.29888 11.28755 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.003643 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.770378 B = 7683.575653 C = 7947.904256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.365 6.365 4 C 0.051 3.949 5 C 0.527 3.473 6 O -0.526 6.526 7 N -0.616 5.616 8 C 0.118 3.882 9 C -0.082 4.082 10 H 0.062 0.938 11 C -0.125 4.125 12 C 0.187 3.813 13 N -0.590 5.590 14 C -0.268 4.268 15 H 0.066 0.934 16 C 0.005 3.995 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.287 1.287 20 H -0.280 1.280 21 H -0.290 1.290 22 C 0.167 3.833 23 C -0.107 4.107 24 H 0.097 0.903 25 C 0.101 3.899 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.038 0.962 38 H 0.054 0.946 39 H 0.253 0.747 40 H 0.043 0.957 41 H 0.009 0.991 42 H 0.063 0.937 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -13.272 -9.507 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C -0.029 4.029 5 C 0.315 3.685 6 O -0.402 6.402 7 N -0.352 5.352 8 C -0.004 4.004 9 C -0.101 4.101 10 H 0.081 0.919 11 C -0.164 4.164 12 C 0.061 3.939 13 N -0.313 5.313 14 C -0.398 4.398 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.206 1.206 21 H -0.216 1.216 22 C 0.040 3.960 23 C -0.127 4.127 24 H 0.115 0.885 25 C -0.023 4.023 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.082 0.918 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.702 -12.500 -9.469 17.935 hybrid contribution 1.082 -0.182 0.614 1.257 sum -7.620 -12.682 -8.856 17.243 Atomic orbital electron populations 1.21728 0.93455 1.02136 1.03489 1.22537 0.95946 0.83500 1.00152 1.88019 1.18714 1.26227 1.95420 1.22153 0.83577 0.94780 1.02409 1.19793 0.81178 0.90388 0.77187 1.90721 1.48464 1.51897 1.49085 1.48669 1.04401 1.09035 1.73066 1.22265 0.93466 0.82215 1.02431 1.21158 0.94038 0.96257 0.98676 0.91947 1.21008 0.97991 0.96060 1.01381 1.19900 1.00808 0.87605 0.85540 1.42796 1.47755 1.06681 1.34058 1.19264 1.16463 0.94477 1.09551 0.91644 1.25008 0.98743 0.97239 0.98396 1.70109 1.35645 1.02798 1.46008 0.86327 0.83304 0.76965 0.80339 1.21441 1.20560 1.21570 1.20321 0.95464 0.89804 0.90447 1.22817 0.95163 0.94756 0.99978 0.88486 1.22568 0.86186 0.92504 1.01020 0.91644 0.91730 0.91034 0.93282 0.93159 0.90518 0.90272 0.90839 0.89870 0.92780 0.92502 0.94383 0.92745 0.93678 0.93834 0.97322 0.91840 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.15 0.38 -0.85 16 2 C 0.06 0.51 6.66 37.15 0.25 0.76 16 3 O -0.37 -5.02 9.88 -55.14 -0.54 -5.56 16 4 C 0.05 0.61 5.62 36.01 0.20 0.82 16 5 C 0.53 8.65 7.93 -10.98 -0.09 8.56 16 6 O -0.53 -10.95 16.78 -14.35 -0.24 -11.19 16 7 N -0.62 -9.52 3.33 -169.36 -0.56 -10.08 16 8 C 0.12 2.02 5.84 -2.73 -0.02 2.00 16 9 C -0.08 -1.29 2.69 -91.01 -0.25 -1.54 16 10 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 11 C -0.13 -2.24 5.46 -29.01 -0.16 -2.39 16 12 C 0.19 4.33 4.37 -5.80 -0.03 4.30 16 13 N -0.59 -14.19 3.17 -177.27 -0.56 -14.75 16 14 C -0.27 -7.17 9.32 -15.06 -0.14 -7.31 16 15 H 0.07 1.71 7.70 -52.48 -0.40 1.31 16 16 C 0.01 0.14 4.81 -17.43 -0.08 0.05 16 17 N -0.90 -25.86 10.79 55.49 0.60 -25.26 16 18 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 C 0.17 3.27 4.94 -5.16 -0.03 3.24 16 23 C -0.11 -1.62 3.98 -88.41 -0.35 -1.97 16 24 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 25 C 0.10 1.26 5.63 -2.04 -0.01 1.25 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.26 8.06 -51.93 -0.42 0.84 16 34 H 0.08 1.69 7.07 -51.93 -0.37 1.32 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.04 1.00 7.27 -51.93 -0.38 0.62 16 38 H 0.05 1.40 6.94 -51.93 -0.36 1.04 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.04 0.83 7.72 -51.92 -0.40 0.43 16 41 H 0.01 0.19 6.91 -51.93 -0.36 -0.16 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.83 7.74 -51.93 -0.40 0.42 16 LS Contribution 337.83 15.07 5.09 5.09 Total: -1.00 -32.71 337.83 -8.86 -41.58 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -7.30 Total: -3.15 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.31 Total: 6.92 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.53 Total: -50.10 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.79 Total: -16.75 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.71 -8.86 -41.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692049522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.721 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds