Wall clock time and date at job start Tue Mar 31 2020 06:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42900 * 109.47289 * 2 1 4 4 C 1.42896 * 114.00083 * 179.97438 * 3 2 1 5 5 C 1.50707 * 109.47013 * 179.97438 * 4 3 2 6 6 O 1.21277 * 120.00093 * 0.02562 * 5 4 3 7 7 N 1.34781 * 119.99890 * 180.02562 * 5 4 3 8 8 C 1.48090 * 125.74336 * 180.02562 * 7 5 4 9 9 C 1.53850 * 103.41301 * 204.44722 * 8 7 5 10 10 H 1.09000 * 109.06380 * 73.84598 * 9 8 7 11 11 C 1.49841 * 114.34659 * 195.56589 * 9 8 7 12 12 C 1.51599 * 114.45570 * 66.00885 * 11 9 8 13 13 N 1.44533 * 112.99999 * 35.49757 * 12 11 9 14 14 C 1.36942 * 117.26602 * 150.68790 * 13 12 11 15 15 H 1.08004 * 119.99658 * 205.10872 * 14 13 12 16 16 C 1.38810 * 120.00238 * 25.10459 * 14 13 12 17 17 N 1.31621 * 119.99762 * 17.22933 * 16 14 13 18 18 Si 1.86790 * 119.99992 * 197.22670 * 16 14 13 19 19 H 1.48507 * 109.46958 * 269.99888 * 18 16 14 20 20 H 1.48495 * 109.47663 * 29.99969 * 18 16 14 21 21 H 1.48508 * 109.47109 * 150.00412 * 18 16 14 22 22 C 1.44402 * 125.46370 * 330.40015 * 13 12 11 23 23 C 1.52993 * 113.17967 * 34.94605 * 22 13 12 24 24 H 1.08996 * 112.80446 * 84.26543 * 23 22 13 25 25 C 1.47460 * 125.74230 * 0.02590 * 7 5 4 26 26 H 1.09004 * 109.47815 * 300.00474 * 1 2 3 27 27 H 1.09006 * 109.47226 * 60.00190 * 1 2 3 28 28 H 1.08999 * 109.47630 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47542 * 239.99477 * 2 1 3 30 30 H 1.09007 * 109.46775 * 119.99531 * 2 1 3 31 31 H 1.08998 * 109.47158 * 60.00329 * 4 3 2 32 32 H 1.08993 * 109.47595 * 299.99791 * 4 3 2 33 33 H 1.09003 * 110.63554 * 322.92852 * 8 7 5 34 34 H 1.09003 * 110.63218 * 85.96482 * 8 7 5 35 35 H 1.09004 * 108.47102 * 187.51384 * 11 9 8 36 36 H 1.08999 * 108.47659 * 304.89918 * 11 9 8 37 37 H 1.08997 * 108.96610 * 274.49690 * 12 11 9 38 38 H 1.09003 * 108.68912 * 156.30132 * 12 11 9 39 39 H 0.96997 * 119.99757 * 180.02562 * 17 16 14 40 40 H 1.09008 * 108.73948 * 155.89563 * 22 13 12 41 41 H 1.09001 * 108.74435 * 273.98511 * 22 13 12 42 42 H 1.09002 * 110.03942 * 62.78374 * 25 7 5 43 43 H 1.09001 * 110.08558 * 301.35653 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 8 2.9610 3.7729 -0.0005 7 7 5.1209 3.2663 -0.0002 8 6 5.6441 4.6517 -0.0004 9 6 7.0446 4.5043 -0.6198 10 1 6.9436 4.3326 -1.6915 11 6 7.9409 5.6864 -0.4089 12 6 8.3285 5.9302 1.0363 13 7 8.5061 4.7082 1.7872 14 6 9.3985 4.7339 2.8256 15 1 9.8736 3.8206 3.1520 16 6 9.6925 5.9339 3.4585 17 7 8.8935 6.9692 3.3100 18 14 11.2219 6.0791 4.5210 19 1 10.8896 5.7088 5.9202 20 1 12.2727 5.1663 4.0037 21 1 11.7193 7.4779 4.4840 22 6 7.8169 3.4640 1.5379 23 6 7.5508 3.2100 0.0528 24 1 8.4004 2.7557 -0.4569 25 6 6.2637 2.3343 -0.0003 26 1 -0.3635 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 3.8339 0.9765 -0.8892 32 1 3.8333 0.9767 0.8907 33 1 5.0183 5.2986 -0.6153 34 1 5.7127 5.0365 1.0172 35 1 8.8491 5.5399 -0.9936 36 1 7.4336 6.5757 -0.7829 37 1 7.5519 6.5262 1.5156 38 1 9.2617 6.4931 1.0575 39 1 9.0992 7.8078 3.7520 40 1 8.4195 2.6450 1.9307 41 1 6.8639 3.4793 2.0669 42 1 6.2570 1.7353 -0.9109 43 1 6.2171 1.6849 0.8739 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692049522.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:48 Heat of formation + Delta-G solvation = -72.815956 kcal Electronic energy + Delta-G solvation = -23039.496345 eV Core-core repulsion = 19698.671599 eV Total energy + Delta-G solvation = -3340.824746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59867 -39.94558 -38.50501 -37.12774 -34.44900 -33.06896 -32.48565 -31.88105 -29.71782 -27.98144 -27.04684 -25.36646 -23.67465 -23.46295 -23.03068 -20.47968 -19.68454 -18.49164 -18.21841 -17.67884 -17.40537 -16.82250 -16.78774 -16.46265 -15.86391 -15.45482 -15.28642 -14.87253 -14.67407 -14.37190 -14.18918 -13.99255 -13.61475 -13.46978 -13.37494 -13.22471 -12.90225 -12.70842 -12.41047 -12.32329 -12.22777 -12.17122 -12.00901 -11.84874 -11.55957 -11.36836 -11.00530 -10.87107 -10.65837 -10.49356 -9.70284 -8.68766 -7.79702 -5.32349 1.46152 1.47733 1.50926 1.57381 1.66299 2.52011 2.89841 3.28745 3.42689 3.48906 3.75736 3.84085 3.90137 4.13925 4.16298 4.23969 4.31162 4.35703 4.38636 4.49402 4.51954 4.55182 4.63016 4.68516 4.79556 4.82961 4.89128 5.00584 5.03955 5.08088 5.10722 5.24577 5.27521 5.34786 5.39110 5.53557 5.70133 5.90241 6.12182 6.40470 6.49218 7.07699 7.22385 8.04946 8.28770 9.19041 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029474 B = 0.003643 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.770378 B = 7683.575653 C = 7947.904256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.405 6.405 4 C 0.058 3.942 5 C 0.517 3.483 6 O -0.585 6.585 7 N -0.615 5.615 8 C 0.119 3.881 9 C -0.077 4.077 10 H 0.100 0.900 11 C -0.117 4.117 12 C 0.200 3.800 13 N -0.604 5.604 14 C -0.275 4.275 15 H 0.072 0.928 16 C -0.053 4.053 17 N -0.936 5.936 18 Si 0.965 3.035 19 H -0.287 1.287 20 H -0.266 1.266 21 H -0.295 1.295 22 C 0.162 3.838 23 C -0.097 4.097 24 H 0.128 0.872 25 C 0.104 3.896 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.065 0.935 37 H -0.008 1.008 38 H 0.019 0.981 39 H 0.247 0.753 40 H 0.050 0.950 41 H -0.013 1.013 42 H 0.112 0.888 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.134 -16.809 -11.366 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.325 6.325 4 C -0.021 4.021 5 C 0.307 3.693 6 O -0.465 6.465 7 N -0.349 5.349 8 C -0.004 4.004 9 C -0.096 4.096 10 H 0.118 0.882 11 C -0.155 4.155 12 C 0.075 3.925 13 N -0.327 5.327 14 C -0.406 4.406 15 H 0.089 0.911 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.794 3.206 19 H -0.214 1.214 20 H -0.191 1.191 21 H -0.222 1.222 22 C 0.036 3.964 23 C -0.117 4.117 24 H 0.146 0.854 25 C -0.018 4.018 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.010 0.990 38 H 0.038 0.962 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.004 0.996 42 H 0.130 0.870 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.827 -16.109 -11.342 21.199 hybrid contribution 0.769 0.898 1.250 1.721 sum -7.058 -15.211 -10.091 19.571 Atomic orbital electron populations 1.21786 0.93317 1.03535 1.02317 1.22804 0.96183 0.81824 1.01920 1.87982 1.19661 1.29063 1.95801 1.22229 0.83371 0.91308 1.05212 1.20761 0.80655 0.92112 0.75752 1.90689 1.50080 1.53918 1.51813 1.48775 1.05211 1.08659 1.72278 1.22024 0.94876 0.83685 0.99792 1.21129 0.92159 0.95617 1.00675 0.88207 1.20839 0.99510 0.97889 0.97297 1.19555 0.97494 0.86827 0.88665 1.43085 1.47776 1.08158 1.33681 1.19686 1.16564 0.94575 1.09739 0.91072 1.25807 1.01490 0.97186 1.00301 1.70312 1.37366 1.03077 1.47510 0.85310 0.80170 0.76614 0.78554 1.21409 1.19106 1.22177 1.20510 0.93853 0.87906 0.94113 1.22788 0.97597 0.95109 0.96187 0.85390 1.22771 0.83212 0.91627 1.04197 0.93092 0.92663 0.88313 0.91017 0.91683 0.86657 0.87937 0.91545 0.94438 0.90852 0.91669 0.99000 0.96236 0.94424 0.93120 0.99568 0.86969 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.41 -10.41 9.88 -129.94 -1.28 -11.70 16 4 C 0.06 1.21 5.62 71.24 0.40 1.61 16 5 C 0.52 16.33 7.93 87.66 0.70 17.02 16 6 O -0.59 -24.92 16.78 16.02 0.27 -24.65 16 7 N -0.61 -17.81 3.33 -808.12 -2.69 -20.50 16 8 C 0.12 4.09 5.84 86.36 0.50 4.59 16 9 C -0.08 -2.24 2.69 -11.05 -0.03 -2.26 16 10 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 11 C -0.12 -4.07 5.46 29.12 0.16 -3.91 16 12 C 0.20 9.66 4.37 86.29 0.38 10.04 16 13 N -0.60 -29.51 3.17 -714.77 -2.27 -31.78 16 14 C -0.28 -14.93 9.32 84.03 0.78 -14.15 16 15 H 0.07 3.70 7.70 -2.91 -0.02 3.68 16 16 C -0.05 -2.95 4.81 84.86 0.41 -2.54 16 17 N -0.94 -56.43 10.79 21.65 0.23 -56.19 16 18 Si 0.97 44.94 29.59 68.60 2.03 46.97 16 19 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 22 C 0.16 6.19 4.94 86.77 0.43 6.62 16 23 C -0.10 -2.59 3.98 -9.36 -0.04 -2.63 16 24 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 25 C 0.10 2.13 5.63 87.15 0.49 2.62 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.10 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 2.34 8.06 -2.39 -0.02 2.32 16 34 H 0.04 1.62 7.07 -2.39 -0.02 1.60 16 35 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H -0.01 -0.45 7.27 -2.39 -0.02 -0.46 16 38 H 0.02 1.04 6.94 -2.39 -0.02 1.03 16 39 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 40 H 0.05 1.85 7.72 -2.38 -0.02 1.83 16 41 H -0.01 -0.57 6.91 -2.39 -0.02 -0.58 16 42 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.58 7.74 -2.39 -0.02 1.57 16 Total: -1.00 -77.66 337.83 2.66 -75.00 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 0.97 Total: 6.10 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 5.40 Total: 16.74 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -4.73 Total: -108.47 kcal Atomic # 8 Polarization: -35.33 SS G_CDS: -1.01 Total: -36.35 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -77.66 2.66 -75.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692049522.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.188 kcal (2) G-P(sol) polarization free energy of solvation -77.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds