Wall clock time and date at job start Tue Mar 31 2020 05:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00025 * 2 1 4 4 H 1.09002 * 109.47259 * 330.00253 * 3 2 1 5 5 C 1.53002 * 109.47113 * 90.00268 * 3 2 1 6 6 C 1.52997 * 109.47319 * 210.00010 * 3 2 1 7 7 C 1.53004 * 109.47236 * 65.00075 * 6 3 2 8 8 C 1.50703 * 109.47376 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99972 * 359.97438 * 8 7 6 10 10 N 1.34768 * 119.99895 * 179.97438 * 8 7 6 11 11 C 1.47866 * 126.94879 * 359.69358 * 10 8 7 12 12 C 1.55997 * 105.11782 * 181.86987 * 11 10 8 13 13 H 1.09002 * 116.16260 * 159.04723 * 12 11 10 14 14 C 1.57079 * 99.47524 * 33.16219 * 12 11 10 15 15 C 1.49289 * 126.94333 * 179.97438 * 10 8 7 16 16 H 1.09000 * 116.15468 * 16.71049 * 15 10 8 17 17 C 1.56021 * 104.09791 * 247.56466 * 15 10 8 18 18 N 1.49284 * 104.31727 * 289.10924 * 12 11 10 19 19 C 1.36936 * 126.94338 * 246.61715 * 18 12 11 20 20 H 1.08001 * 120.00319 * 359.97438 * 19 18 12 21 21 C 1.38817 * 119.99763 * 180.02562 * 19 18 12 22 22 N 1.31618 * 119.99994 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47061 * 119.99678 * 23 21 19 26 26 H 1.48498 * 109.46950 * 239.99569 * 23 21 19 27 27 H 1.09000 * 109.47064 * 299.99806 * 1 2 3 28 28 H 1.09007 * 109.47276 * 60.00167 * 1 2 3 29 29 H 1.08998 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47075 * 59.99312 * 5 3 2 31 31 H 1.08996 * 109.47407 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.46986 * 300.00041 * 5 3 2 33 33 H 1.09001 * 109.47630 * 185.00204 * 6 3 2 34 34 H 1.09004 * 109.47346 * 305.00335 * 6 3 2 35 35 H 1.09001 * 109.46917 * 300.00567 * 7 6 3 36 36 H 1.09004 * 109.46741 * 59.99889 * 7 6 3 37 37 H 1.09004 * 110.31414 * 300.90301 * 11 10 8 38 38 H 1.09000 * 110.31822 * 63.08334 * 11 10 8 39 39 H 1.08998 * 112.36740 * 191.51104 * 14 12 11 40 40 H 1.09000 * 112.44719 * 64.09445 * 14 12 11 41 41 H 1.08997 * 110.31012 * 47.67476 * 17 15 10 42 42 H 1.08997 * 110.31512 * 169.86209 * 17 15 10 43 43 H 0.97002 * 119.99586 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1383 0.9185 -2.1955 8 6 4.4668 0.8763 -2.9058 9 8 5.4893 1.1005 -2.2933 10 7 4.5185 0.5895 -4.2216 11 6 3.3766 0.2872 -5.1110 12 6 4.0134 -0.0131 -6.5030 13 1 3.4021 -0.5903 -7.1967 14 6 5.3581 -0.6762 -6.0345 15 6 5.7410 0.5071 -5.0746 16 1 6.6902 0.4176 -4.5464 17 6 5.6058 1.7171 -6.0503 18 7 4.5008 1.3148 -6.9802 19 6 4.0296 2.0287 -8.0495 20 1 3.2200 1.6358 -8.6466 21 6 4.5934 3.2570 -8.3667 22 7 5.5804 3.7356 -7.6393 23 14 3.9510 4.2306 -9.8258 24 1 2.8468 3.4792 -10.4749 25 1 3.4471 5.5473 -9.3592 26 1 5.0490 4.4392 -10.8036 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.8829 1.0773 1.9563 31 1 2.6606 2.7672 1.4426 32 1 1.2569 1.8014 1.9564 33 1 3.8427 2.2370 -0.6443 34 1 3.9931 0.5051 -0.2618 35 1 2.6544 -0.0552 -2.2724 36 1 2.5041 1.6766 -2.6550 37 1 2.8327 -0.5840 -4.7457 38 1 2.7116 1.1482 -5.1791 39 1 6.0694 -0.7939 -6.8520 40 1 5.1963 -1.6107 -5.4973 41 1 5.3491 2.6213 -5.4985 42 1 6.5330 1.8615 -6.6048 43 1 5.9745 4.5937 -7.8612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692362616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:29 Heat of formation + Delta-G solvation = -34.102611 kcal Electronic energy + Delta-G solvation = -23001.530829 eV Core-core repulsion = 19662.384819 eV Total energy + Delta-G solvation = -3339.146010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.99858 -38.66157 -37.66574 -33.67947 -33.53053 -31.59214 -30.19664 -28.90755 -28.46290 -26.85922 -25.20292 -24.65812 -23.14664 -21.24402 -20.22449 -19.80436 -18.32462 -17.19241 -16.96521 -16.29457 -15.73306 -15.27125 -15.16208 -15.09673 -14.46555 -13.92016 -13.69486 -13.46581 -13.16010 -12.78132 -12.54585 -12.41542 -12.11445 -11.86255 -11.69419 -11.57516 -11.37377 -11.26336 -11.04594 -10.99898 -10.86128 -10.75372 -10.65842 -10.54874 -10.24912 -10.04846 -9.77824 -9.60973 -9.32591 -8.72179 -7.95021 -6.93404 -5.76980 -3.11185 3.14543 3.36402 3.41479 3.44615 3.46211 3.65449 4.41148 4.64410 4.81821 4.91723 5.04967 5.15112 5.17438 5.20959 5.25573 5.30565 5.39994 5.46042 5.50531 5.56773 5.57522 5.66286 5.71755 5.80268 5.82841 5.93685 6.00093 6.09758 6.21070 6.29712 6.32801 6.44023 6.53223 6.61099 6.73031 7.08160 7.42389 7.48734 7.70833 8.05617 8.18044 8.67888 9.07237 9.70453 10.39755 11.35515 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.003995 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.029507 B = 7007.336897 C = 7305.664178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.173 4.173 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.527 3.473 9 O -0.560 6.560 10 N -0.608 5.608 11 C 0.084 3.916 12 C 0.142 3.858 13 H 0.106 0.894 14 C -0.151 4.151 15 C 0.096 3.904 16 H 0.111 0.889 17 C 0.177 3.823 18 N -0.600 5.600 19 C -0.230 4.230 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.609 -7.612 12.270 16.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.026 3.974 4 H 0.079 0.921 5 C -0.231 4.231 6 C -0.137 4.137 7 C -0.172 4.172 8 C 0.316 3.684 9 O -0.439 6.439 10 N -0.341 5.341 11 C -0.041 4.041 12 C 0.033 3.967 13 H 0.124 0.876 14 C -0.191 4.191 15 C -0.007 4.007 16 H 0.129 0.871 17 C 0.053 3.947 18 N -0.325 5.325 19 C -0.358 4.358 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.742 3.258 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.217 1.217 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.930 -7.375 12.535 16.565 hybrid contribution -0.663 0.944 -0.744 1.373 sum -8.593 -6.431 11.791 15.944 Atomic orbital electron populations 1.22767 0.81503 1.02547 0.99822 1.87940 1.19270 1.28025 1.95069 1.22229 0.95139 0.84490 0.95585 0.92087 1.22262 1.02082 1.01925 0.96819 1.21447 0.95197 1.03717 0.93301 1.21569 0.95740 1.04083 0.95820 1.20214 0.91163 0.76477 0.80567 1.90646 1.36605 1.51131 1.65542 1.49245 1.09692 1.67906 1.07294 1.23273 0.88940 0.99409 0.92521 1.23115 0.93446 0.88669 0.91449 0.87631 1.24154 0.99796 0.96147 0.98999 1.24337 0.88462 0.98152 0.89728 0.87141 1.22253 0.92115 0.91753 0.88628 1.45733 1.38850 1.16414 1.31497 1.19112 1.14133 0.99363 1.03208 0.90151 1.24810 0.98483 0.97757 0.99286 1.69921 1.26705 1.19926 1.40099 0.86054 0.77912 0.79934 0.81871 1.20478 1.21826 1.21745 0.94360 0.93981 0.89831 0.91665 0.91418 0.92709 0.89866 0.90381 0.88839 0.89539 0.92838 0.91237 0.89874 0.91678 0.93349 0.92473 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.82 101.05 1.09 1.35 16 2 O -0.38 -4.44 9.88 -35.23 -0.35 -4.79 16 3 C 0.08 0.90 2.72 -26.73 -0.07 0.83 16 4 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 5 C -0.17 -1.62 9.53 37.16 0.35 -1.26 16 6 C -0.10 -1.29 4.21 -26.73 -0.11 -1.41 16 7 C -0.13 -1.88 4.88 -27.88 -0.14 -2.02 16 8 C 0.53 9.78 7.90 -10.99 -0.09 9.69 16 9 O -0.56 -12.07 16.33 5.56 0.09 -11.98 16 10 N -0.61 -11.41 2.94 -156.78 -0.46 -11.87 16 11 C 0.08 1.44 6.01 -1.69 -0.01 1.43 16 12 C 0.14 2.64 5.52 -62.57 -0.35 2.29 16 13 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 14 C -0.15 -2.60 6.82 -22.29 -0.15 -2.75 16 15 C 0.10 1.90 5.18 -62.53 -0.32 1.57 16 16 H 0.11 2.15 8.06 -51.93 -0.42 1.73 16 17 C 0.18 4.28 4.87 -0.52 0.00 4.28 16 18 N -0.60 -14.45 3.07 -154.68 -0.47 -14.93 16 19 C -0.23 -6.11 10.38 -15.06 -0.16 -6.27 16 20 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 21 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -26.81 10.57 55.49 0.59 -26.22 16 23 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H 0.04 0.28 7.87 -51.93 -0.41 -0.13 16 28 H 0.04 0.33 8.09 -51.92 -0.42 -0.09 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 33 H 0.08 1.13 8.10 -51.93 -0.42 0.70 16 34 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.09 1.24 7.82 -51.93 -0.41 0.83 16 36 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.34 7.73 -51.93 -0.40 0.94 16 42 H 0.06 1.52 7.47 -51.93 -0.39 1.13 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -31.85 346.30 -7.91 -39.76 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.45 Total: 0.75 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -0.05 Total: 7.45 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.35 Total: -53.02 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.26 Total: -16.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.85 -7.91 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.657 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds