Wall clock time and date at job start Tue Mar 31 2020 05:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00025 * 2 1 4 4 H 1.09002 * 109.47259 * 330.00253 * 3 2 1 5 5 C 1.53002 * 109.47113 * 90.00268 * 3 2 1 6 6 C 1.52997 * 109.47319 * 210.00010 * 3 2 1 7 7 C 1.53004 * 109.47236 * 65.00075 * 6 3 2 8 8 C 1.50703 * 109.47376 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99972 * 359.97438 * 8 7 6 10 10 N 1.34768 * 119.99895 * 179.97438 * 8 7 6 11 11 C 1.47866 * 126.94879 * 359.69358 * 10 8 7 12 12 C 1.55997 * 105.11782 * 181.86987 * 11 10 8 13 13 H 1.09002 * 116.16260 * 159.04723 * 12 11 10 14 14 C 1.57079 * 99.47524 * 33.16219 * 12 11 10 15 15 C 1.49289 * 126.94333 * 179.97438 * 10 8 7 16 16 H 1.09000 * 116.15468 * 16.71049 * 15 10 8 17 17 C 1.56021 * 104.09791 * 247.56466 * 15 10 8 18 18 N 1.49284 * 104.31727 * 289.10924 * 12 11 10 19 19 C 1.36936 * 126.94338 * 246.61715 * 18 12 11 20 20 H 1.08001 * 120.00319 * 359.97438 * 19 18 12 21 21 C 1.38817 * 119.99763 * 180.02562 * 19 18 12 22 22 N 1.31618 * 119.99994 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47121 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47061 * 119.99678 * 23 21 19 26 26 H 1.48498 * 109.46950 * 239.99569 * 23 21 19 27 27 H 1.09000 * 109.47064 * 299.99806 * 1 2 3 28 28 H 1.09007 * 109.47276 * 60.00167 * 1 2 3 29 29 H 1.08998 * 109.47106 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47075 * 59.99312 * 5 3 2 31 31 H 1.08996 * 109.47407 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.46986 * 300.00041 * 5 3 2 33 33 H 1.09001 * 109.47630 * 185.00204 * 6 3 2 34 34 H 1.09004 * 109.47346 * 305.00335 * 6 3 2 35 35 H 1.09001 * 109.46917 * 300.00567 * 7 6 3 36 36 H 1.09004 * 109.46741 * 59.99889 * 7 6 3 37 37 H 1.09004 * 110.31414 * 300.90301 * 11 10 8 38 38 H 1.09000 * 110.31822 * 63.08334 * 11 10 8 39 39 H 1.08998 * 112.36740 * 191.51104 * 14 12 11 40 40 H 1.09000 * 112.44719 * 64.09445 * 14 12 11 41 41 H 1.08997 * 110.31012 * 47.67476 * 17 15 10 42 42 H 1.08997 * 110.31512 * 169.86209 * 17 15 10 43 43 H 0.97002 * 119.99586 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3589 1.2633 -0.7212 7 6 3.1383 0.9185 -2.1955 8 6 4.4668 0.8763 -2.9058 9 8 5.4893 1.1005 -2.2933 10 7 4.5185 0.5895 -4.2216 11 6 3.3766 0.2872 -5.1110 12 6 4.0134 -0.0131 -6.5030 13 1 3.4021 -0.5903 -7.1967 14 6 5.3581 -0.6762 -6.0345 15 6 5.7410 0.5071 -5.0746 16 1 6.6902 0.4176 -4.5464 17 6 5.6058 1.7171 -6.0503 18 7 4.5008 1.3148 -6.9802 19 6 4.0296 2.0287 -8.0495 20 1 3.2200 1.6358 -8.6466 21 6 4.5934 3.2570 -8.3667 22 7 5.5804 3.7356 -7.6393 23 14 3.9510 4.2306 -9.8258 24 1 2.8468 3.4792 -10.4749 25 1 3.4471 5.5473 -9.3592 26 1 5.0490 4.4392 -10.8036 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 2.8829 1.0773 1.9563 31 1 2.6606 2.7672 1.4426 32 1 1.2569 1.8014 1.9564 33 1 3.8427 2.2370 -0.6443 34 1 3.9931 0.5051 -0.2618 35 1 2.6544 -0.0552 -2.2724 36 1 2.5041 1.6766 -2.6550 37 1 2.8327 -0.5840 -4.7457 38 1 2.7116 1.1482 -5.1791 39 1 6.0694 -0.7939 -6.8520 40 1 5.1963 -1.6107 -5.4973 41 1 5.3491 2.6213 -5.4985 42 1 6.5330 1.8615 -6.6048 43 1 5.9745 4.5937 -7.8612 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692362616.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:28 Heat of formation + Delta-G solvation = -54.325309 kcal Electronic energy + Delta-G solvation = -23002.407751 eV Core-core repulsion = 19662.384819 eV Total energy + Delta-G solvation = -3340.022932 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52868 -39.73809 -38.97029 -35.39401 -34.68943 -33.28233 -31.40426 -30.41497 -30.16113 -27.52840 -26.94345 -25.94315 -24.71033 -22.30463 -21.63605 -21.40296 -19.93298 -18.81068 -17.94139 -17.79024 -17.34315 -16.56695 -16.43253 -15.97645 -15.89890 -15.55311 -15.10160 -14.87043 -14.27690 -13.92083 -13.80431 -13.55304 -13.41113 -13.35575 -13.19639 -13.01354 -12.82031 -12.74415 -12.47594 -12.27917 -12.22442 -12.13291 -12.06065 -11.97352 -11.87543 -11.54425 -11.48810 -10.94216 -10.70764 -10.49323 -9.51482 -8.91155 -7.83838 -5.19331 1.47525 1.47875 1.58202 1.68273 2.04058 2.48956 2.89278 3.31940 3.36349 3.56863 3.80243 3.83049 3.91892 4.04386 4.09852 4.18562 4.22839 4.35681 4.48384 4.56275 4.60138 4.61499 4.65403 4.74958 4.80143 4.87547 4.91185 4.94715 4.98672 5.02843 5.05483 5.14332 5.21275 5.26304 5.32446 5.45977 5.54047 5.65009 6.07422 6.33603 6.71260 7.00518 7.20582 7.70138 8.42050 9.28015 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021127 B = 0.003995 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.029507 B = 7007.336897 C = 7305.664178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.088 3.912 4 H 0.073 0.927 5 C -0.172 4.172 6 C -0.096 4.096 7 C -0.119 4.119 8 C 0.518 3.482 9 O -0.597 6.597 10 N -0.612 5.612 11 C 0.092 3.908 12 C 0.136 3.864 13 H 0.137 0.863 14 C -0.129 4.129 15 C 0.097 3.903 16 H 0.109 0.891 17 C 0.189 3.811 18 N -0.620 5.620 19 C -0.227 4.227 20 H 0.096 0.904 21 C -0.073 4.073 22 N -0.959 5.959 23 Si 0.976 3.024 24 H -0.258 1.258 25 H -0.300 1.300 26 H -0.298 1.298 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.054 0.946 39 H 0.079 0.921 40 H 0.102 0.898 41 H -0.001 1.001 42 H 0.019 0.981 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.313 -9.703 12.433 19.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.229 4.229 6 C -0.134 4.134 7 C -0.159 4.159 8 C 0.309 3.691 9 O -0.479 6.479 10 N -0.345 5.345 11 C -0.033 4.033 12 C 0.030 3.970 13 H 0.155 0.845 14 C -0.168 4.168 15 C -0.007 4.007 16 H 0.126 0.874 17 C 0.064 3.936 18 N -0.345 5.345 19 C -0.356 4.356 20 H 0.114 0.886 21 C -0.265 4.265 22 N -0.608 5.608 23 Si 0.806 3.194 24 H -0.181 1.181 25 H -0.228 1.228 26 H -0.225 1.225 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.120 0.880 41 H 0.017 0.983 42 H 0.037 0.963 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.691 -9.525 12.697 19.137 hybrid contribution 0.165 1.546 -0.769 1.735 sum -10.526 -7.979 11.928 17.797 Atomic orbital electron populations 1.22956 0.79867 1.03674 1.00714 1.87904 1.21086 1.28185 1.95231 1.22155 0.93879 0.84798 0.96162 0.90868 1.22243 1.02769 1.01916 0.95970 1.21400 0.96559 1.02558 0.92872 1.21559 0.93120 1.05408 0.95797 1.21056 0.92349 0.75312 0.80420 1.90625 1.38357 1.52603 1.66362 1.49369 1.09708 1.67846 1.07601 1.23214 0.88070 1.00653 0.91320 1.23552 0.94597 0.86342 0.92542 0.84541 1.24056 0.98480 0.96194 0.98109 1.24154 0.89431 0.97358 0.89747 0.87361 1.21831 0.90773 0.92097 0.88897 1.45995 1.38948 1.18540 1.30993 1.19607 1.13470 0.99217 1.03332 0.88592 1.25650 0.99293 0.99370 1.02175 1.70163 1.28651 1.19907 1.42124 0.85026 0.77531 0.78153 0.78733 1.18147 1.22761 1.22525 0.93257 0.93298 0.88677 0.92402 0.90942 0.91256 0.90962 0.91893 0.86928 0.88517 0.88079 0.92746 0.90252 0.87984 0.98292 0.96254 0.94779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.40 -8.36 9.88 -148.98 -1.47 -9.83 16 3 C 0.09 1.73 2.72 30.59 0.08 1.81 16 4 H 0.07 1.26 7.79 -2.39 -0.02 1.25 16 5 C -0.17 -2.92 9.53 71.98 0.69 -2.23 16 6 C -0.10 -2.43 4.21 30.59 0.13 -2.30 16 7 C -0.12 -3.18 4.88 29.85 0.15 -3.04 16 8 C 0.52 18.88 7.90 87.66 0.69 19.57 16 9 O -0.60 -26.17 16.33 -3.03 -0.05 -26.22 16 10 N -0.61 -22.24 2.94 -768.32 -2.26 -24.50 16 11 C 0.09 2.85 6.01 87.16 0.52 3.37 16 12 C 0.14 4.65 5.52 46.92 0.26 4.91 16 13 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 14 C -0.13 -4.10 6.82 33.47 0.23 -3.87 16 15 C 0.10 3.81 5.18 46.94 0.24 4.06 16 16 H 0.11 4.30 8.06 -2.39 -0.02 4.28 16 17 C 0.19 9.56 4.87 86.76 0.42 9.98 16 18 N -0.62 -29.71 3.07 -643.30 -1.97 -31.69 16 19 C -0.23 -11.99 10.38 84.03 0.87 -11.12 16 20 H 0.10 4.66 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 22 N -0.96 -58.59 10.57 21.65 0.23 -58.36 16 23 Si 0.98 45.09 29.55 68.60 2.03 47.11 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 27 H 0.05 0.57 7.87 -2.39 -0.02 0.55 16 28 H 0.05 0.61 8.09 -2.38 -0.02 0.59 16 29 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.97 7.87 -2.39 -0.02 0.95 16 33 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 34 H 0.06 1.77 8.10 -2.39 -0.02 1.75 16 35 H 0.11 2.60 7.82 -2.39 -0.02 2.59 16 36 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.00 -0.07 7.73 -2.39 -0.02 -0.09 16 42 H 0.02 1.10 7.47 -2.39 -0.02 1.08 16 43 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -72.51 346.30 3.45 -69.06 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.96 Total: 15.31 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 5.98 Total: 19.11 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -4.00 Total: -114.54 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.52 Total: -36.05 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.51 3.45 -69.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362616.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.735 kcal (2) G-P(sol) polarization free energy of solvation -72.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds