Wall clock time and date at job start Tue Mar 31 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99544 * 2 1 4 4 H 1.08997 * 109.47494 * 29.99628 * 3 2 1 5 5 C 1.53004 * 109.47321 * 269.99614 * 3 2 1 6 6 C 1.53001 * 109.47085 * 150.00150 * 3 2 1 7 7 C 1.53002 * 109.46619 * 294.99990 * 6 3 2 8 8 C 1.50709 * 109.46728 * 180.02562 * 7 6 3 9 9 O 1.21278 * 120.00397 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99791 * 180.02562 * 8 7 6 11 11 C 1.47874 * 126.94503 * 0.02562 * 10 8 7 12 12 C 1.56014 * 105.19097 * 182.05586 * 11 10 8 13 13 H 1.08998 * 116.25107 * 158.78411 * 12 11 10 14 14 C 1.57082 * 99.60807 * 32.75371 * 12 11 10 15 15 C 1.49607 * 127.09453 * 178.43450 * 10 8 7 16 16 H 1.09001 * 116.51767 * 16.89231 * 15 10 8 17 17 C 1.56018 * 104.88605 * 246.79588 * 15 10 8 18 18 N 1.47874 * 105.10081 * 289.08809 * 17 15 10 19 19 C 1.36936 * 126.94052 * 182.00404 * 18 17 15 20 20 H 1.08005 * 119.99854 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00013 * 359.97438 * 19 18 17 22 22 N 1.31613 * 120.00046 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47318 * 59.99613 * 23 21 19 25 25 H 1.48499 * 109.47461 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47365 * 300.00151 * 23 21 19 27 27 H 1.08997 * 109.47019 * 60.00426 * 1 2 3 28 28 H 1.09004 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47467 * 300.00252 * 1 2 3 30 30 H 1.09002 * 109.46553 * 60.00365 * 5 3 2 31 31 H 1.08997 * 109.47406 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47313 * 300.00392 * 5 3 2 33 33 H 1.08994 * 109.47329 * 175.00095 * 6 3 2 34 34 H 1.09001 * 109.47433 * 54.99801 * 6 3 2 35 35 H 1.08997 * 109.47672 * 59.99962 * 7 6 3 36 36 H 1.08997 * 109.47202 * 299.99288 * 7 6 3 37 37 H 1.09002 * 110.31604 * 63.09759 * 11 10 8 38 38 H 1.09004 * 110.31557 * 301.01296 * 11 10 8 39 39 H 1.09007 * 112.36824 * 64.27640 * 14 12 11 40 40 H 1.09001 * 112.36928 * 191.70963 * 14 12 11 41 41 H 1.08996 * 110.31380 * 170.18728 * 17 15 10 42 42 H 1.08997 * 110.31457 * 47.99196 * 17 15 10 43 43 H 0.97009 * 119.99829 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5137 5 6 2.2176 1.7715 -1.4425 6 6 3.3588 1.2634 0.7212 7 6 3.1381 0.9185 2.1954 8 6 4.4666 0.8777 2.9060 9 8 5.4891 1.1018 2.2936 10 7 4.5183 0.5910 4.2219 11 6 3.3759 0.2933 5.1123 12 6 4.0020 0.0909 6.5269 13 1 3.3283 0.2158 7.3747 14 6 5.2012 1.1008 6.4298 15 6 5.7434 0.4765 5.0730 16 1 6.6584 0.9104 4.6697 17 6 5.8128 -1.0294 5.4751 18 7 4.7009 -1.2246 6.4303 19 6 4.3777 -2.3790 7.0922 20 1 3.5360 -2.3959 7.7688 21 6 5.1312 -3.5276 6.8928 22 7 6.1559 -3.5073 6.0671 23 14 4.6898 -5.1024 7.7953 24 1 3.3093 -5.5113 7.4315 25 1 5.6410 -6.1763 7.4113 26 1 4.7679 -4.8720 9.2602 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.2568 1.8015 -1.9563 31 1 2.6613 2.7671 -1.4425 32 1 2.8829 1.0776 -1.9564 33 1 3.8425 2.2371 0.6444 34 1 3.9931 0.5053 0.2617 35 1 2.6544 -0.0552 2.2724 36 1 2.5040 1.6766 2.6550 37 1 2.8706 -0.6165 4.7884 38 1 2.6771 1.1299 5.1239 39 1 4.8669 2.1331 6.3261 40 1 5.9114 0.9814 7.2481 41 1 6.7665 -1.2494 5.9547 42 1 5.6740 -1.6620 4.5984 43 1 6.6827 -4.3100 5.9281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692362617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:31 Heat of formation + Delta-G solvation = -34.176814 kcal Electronic energy + Delta-G solvation = -23033.520422 eV Core-core repulsion = 19694.371194 eV Total energy + Delta-G solvation = -3339.149228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.96950 -38.64239 -37.67160 -33.67204 -33.57499 -31.58421 -30.19292 -28.83706 -28.49511 -26.82354 -25.21395 -24.66131 -23.13765 -21.23547 -20.24937 -19.78516 -18.30506 -17.18350 -16.94520 -16.28546 -15.67509 -15.43695 -15.07693 -14.98376 -14.50298 -13.93536 -13.69796 -13.44601 -13.14061 -12.80590 -12.54385 -12.39027 -12.10760 -11.84565 -11.67362 -11.56505 -11.35218 -11.29877 -11.06567 -10.96509 -10.82160 -10.75205 -10.64411 -10.51100 -10.24994 -10.08835 -9.74757 -9.62353 -9.32581 -8.68430 -7.94802 -6.91860 -5.75540 -3.10283 3.13268 3.38384 3.42521 3.44792 3.46919 3.68887 4.42993 4.64355 4.81715 4.90833 5.05429 5.17005 5.19986 5.21364 5.25690 5.29936 5.39500 5.48619 5.51025 5.57323 5.58339 5.66521 5.69952 5.79158 5.81925 5.94729 6.00675 6.11430 6.23582 6.29535 6.32581 6.44417 6.53920 6.60864 6.72403 7.12345 7.43380 7.50940 7.72820 8.10809 8.18468 8.67701 9.11209 9.72233 10.41627 11.36510 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018699 B = 0.004316 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.037373 B = 6485.373975 C = 7210.121782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.084 3.916 4 H 0.059 0.941 5 C -0.174 4.174 6 C -0.099 4.099 7 C -0.132 4.132 8 C 0.527 3.473 9 O -0.560 6.560 10 N -0.609 5.609 11 C 0.085 3.915 12 C 0.140 3.860 13 H 0.104 0.896 14 C -0.152 4.152 15 C 0.098 3.902 16 H 0.112 0.888 17 C 0.175 3.825 18 N -0.597 5.597 19 C -0.233 4.233 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.081 0.919 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.141 11.834 -8.009 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C 0.026 3.974 4 H 0.077 0.923 5 C -0.231 4.231 6 C -0.137 4.137 7 C -0.172 4.172 8 C 0.316 3.684 9 O -0.439 6.439 10 N -0.342 5.342 11 C -0.041 4.041 12 C 0.031 3.969 13 H 0.122 0.878 14 C -0.192 4.192 15 C -0.004 4.004 16 H 0.130 0.870 17 C 0.050 3.950 18 N -0.321 5.321 19 C -0.361 4.361 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.406 11.513 -8.406 17.079 hybrid contribution -0.539 -0.778 0.387 1.023 sum -9.945 10.735 -8.019 16.687 Atomic orbital electron populations 1.22767 0.81498 1.02704 0.99623 1.87985 1.19265 1.27792 1.95022 1.22215 0.95067 0.84600 0.95518 0.92259 1.22266 1.02106 1.01829 0.96908 1.21449 0.95300 1.03575 0.93391 1.21571 0.95646 1.04252 0.95741 1.20226 0.91178 0.76473 0.80530 1.90645 1.36597 1.51472 1.65210 1.49327 1.09638 1.67592 1.07649 1.23281 0.88420 0.99174 0.93185 1.23137 0.93356 0.87079 0.93323 0.87791 1.24444 0.99773 0.97590 0.97402 1.24718 0.88202 0.99480 0.88043 0.87028 1.21897 0.92099 0.87891 0.93139 1.45219 1.31766 1.05299 1.49859 1.18998 1.11180 0.86309 1.19633 0.90215 1.24818 0.97773 0.98031 0.99563 1.69908 1.19933 1.28077 1.38645 0.86193 0.77447 0.82904 0.79127 1.21157 1.21609 1.21120 0.94422 0.89720 0.94067 0.92705 0.91535 0.91585 0.90038 0.90213 0.88506 0.89871 0.91154 0.92953 0.91508 0.90024 0.92613 0.93452 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.82 101.05 1.09 1.37 16 2 O -0.38 -4.76 9.88 -35.23 -0.35 -5.11 16 3 C 0.08 0.91 2.72 -26.73 -0.07 0.83 16 4 H 0.06 0.55 7.79 -51.93 -0.40 0.15 16 5 C -0.17 -1.61 9.53 37.16 0.35 -1.26 16 6 C -0.10 -1.30 4.21 -26.73 -0.11 -1.41 16 7 C -0.13 -1.89 4.88 -27.88 -0.14 -2.02 16 8 C 0.53 9.78 7.90 -10.98 -0.09 9.70 16 9 O -0.56 -12.07 16.36 5.56 0.09 -11.98 16 10 N -0.61 -11.44 2.98 -155.39 -0.46 -11.90 16 11 C 0.08 1.46 5.98 -1.68 -0.01 1.45 16 12 C 0.14 2.61 5.47 -62.56 -0.34 2.26 16 13 H 0.10 1.73 8.14 -51.93 -0.42 1.30 16 14 C -0.15 -2.61 6.94 -21.24 -0.15 -2.75 16 15 C 0.10 1.95 5.27 -61.31 -0.32 1.62 16 16 H 0.11 2.17 8.08 -51.93 -0.42 1.75 16 17 C 0.17 4.27 4.81 -1.67 -0.01 4.26 16 18 N -0.60 -14.48 3.02 -156.35 -0.47 -14.96 16 19 C -0.23 -6.23 10.37 -15.06 -0.16 -6.39 16 20 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 21 C 0.00 -0.14 5.49 -17.43 -0.10 -0.23 16 22 N -0.92 -27.00 10.56 55.49 0.59 -26.41 16 23 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.04 0.29 7.87 -51.93 -0.41 -0.12 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.33 8.08 -51.93 -0.42 -0.09 16 30 H 0.05 0.45 7.87 -51.93 -0.41 0.04 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.10 1.45 7.82 -51.93 -0.41 1.05 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.06 1.49 7.46 -51.93 -0.39 1.11 16 42 H 0.05 1.34 7.68 -51.93 -0.40 0.94 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 346.34 15.07 5.22 5.22 Total: -1.00 -32.18 346.34 -7.90 -40.08 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.44 Total: 0.89 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: -0.04 Total: 7.43 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -0.35 Total: -53.27 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.26 Total: -17.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.18 -7.90 -40.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.899 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds