Wall clock time and date at job start Tue Mar 31 2020 05:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99544 * 2 1 4 4 H 1.08997 * 109.47494 * 29.99628 * 3 2 1 5 5 C 1.53004 * 109.47321 * 269.99614 * 3 2 1 6 6 C 1.53001 * 109.47085 * 150.00150 * 3 2 1 7 7 C 1.53002 * 109.46619 * 294.99990 * 6 3 2 8 8 C 1.50709 * 109.46728 * 180.02562 * 7 6 3 9 9 O 1.21278 * 120.00397 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99791 * 180.02562 * 8 7 6 11 11 C 1.47874 * 126.94503 * 0.02562 * 10 8 7 12 12 C 1.56014 * 105.19097 * 182.05586 * 11 10 8 13 13 H 1.08998 * 116.25107 * 158.78411 * 12 11 10 14 14 C 1.57082 * 99.60807 * 32.75371 * 12 11 10 15 15 C 1.49607 * 127.09453 * 178.43450 * 10 8 7 16 16 H 1.09001 * 116.51767 * 16.89231 * 15 10 8 17 17 C 1.56018 * 104.88605 * 246.79588 * 15 10 8 18 18 N 1.47874 * 105.10081 * 289.08809 * 17 15 10 19 19 C 1.36936 * 126.94052 * 182.00404 * 18 17 15 20 20 H 1.08005 * 119.99854 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00013 * 359.97438 * 19 18 17 22 22 N 1.31613 * 120.00046 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47318 * 59.99613 * 23 21 19 25 25 H 1.48499 * 109.47461 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47365 * 300.00151 * 23 21 19 27 27 H 1.08997 * 109.47019 * 60.00426 * 1 2 3 28 28 H 1.09004 * 109.46925 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47467 * 300.00252 * 1 2 3 30 30 H 1.09002 * 109.46553 * 60.00365 * 5 3 2 31 31 H 1.08997 * 109.47406 * 180.02562 * 5 3 2 32 32 H 1.09001 * 109.47313 * 300.00392 * 5 3 2 33 33 H 1.08994 * 109.47329 * 175.00095 * 6 3 2 34 34 H 1.09001 * 109.47433 * 54.99801 * 6 3 2 35 35 H 1.08997 * 109.47672 * 59.99962 * 7 6 3 36 36 H 1.08997 * 109.47202 * 299.99288 * 7 6 3 37 37 H 1.09002 * 110.31604 * 63.09759 * 11 10 8 38 38 H 1.09004 * 110.31557 * 301.01296 * 11 10 8 39 39 H 1.09007 * 112.36824 * 64.27640 * 14 12 11 40 40 H 1.09001 * 112.36928 * 191.70963 * 14 12 11 41 41 H 1.08996 * 110.31380 * 170.18728 * 17 15 10 42 42 H 1.08997 * 110.31457 * 47.99196 * 17 15 10 43 43 H 0.97009 * 119.99829 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3448 1.9994 0.5137 5 6 2.2176 1.7715 -1.4425 6 6 3.3588 1.2634 0.7212 7 6 3.1381 0.9185 2.1954 8 6 4.4666 0.8777 2.9060 9 8 5.4891 1.1018 2.2936 10 7 4.5183 0.5910 4.2219 11 6 3.3759 0.2933 5.1123 12 6 4.0020 0.0909 6.5269 13 1 3.3283 0.2158 7.3747 14 6 5.2012 1.1008 6.4298 15 6 5.7434 0.4765 5.0730 16 1 6.6584 0.9104 4.6697 17 6 5.8128 -1.0294 5.4751 18 7 4.7009 -1.2246 6.4303 19 6 4.3777 -2.3790 7.0922 20 1 3.5360 -2.3959 7.7688 21 6 5.1312 -3.5276 6.8928 22 7 6.1559 -3.5073 6.0671 23 14 4.6898 -5.1024 7.7953 24 1 3.3093 -5.5113 7.4315 25 1 5.6410 -6.1763 7.4113 26 1 4.7679 -4.8720 9.2602 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.2568 1.8015 -1.9563 31 1 2.6613 2.7671 -1.4425 32 1 2.8829 1.0776 -1.9564 33 1 3.8425 2.2371 0.6444 34 1 3.9931 0.5053 0.2617 35 1 2.6544 -0.0552 2.2724 36 1 2.5040 1.6766 2.6550 37 1 2.8706 -0.6165 4.7884 38 1 2.6771 1.1299 5.1239 39 1 4.8669 2.1331 6.3261 40 1 5.9114 0.9814 7.2481 41 1 6.7665 -1.2494 5.9547 42 1 5.6740 -1.6620 4.5984 43 1 6.6827 -4.3100 5.9281 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692362617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:30 Heat of formation + Delta-G solvation = -55.049551 kcal Electronic energy + Delta-G solvation = -23034.425531 eV Core-core repulsion = 19694.371194 eV Total energy + Delta-G solvation = -3340.054337 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.50360 -39.74738 -38.98317 -35.44383 -34.69079 -33.29608 -31.38758 -30.36994 -30.18421 -27.54058 -26.96620 -25.94521 -24.70646 -22.30518 -21.64584 -21.39536 -19.92520 -18.80274 -17.94158 -17.79640 -17.31935 -16.68895 -16.33366 -15.98127 -15.89696 -15.59531 -15.12324 -14.90619 -14.19890 -13.99371 -13.78800 -13.54528 -13.38703 -13.34089 -13.19557 -13.00972 -12.83384 -12.67440 -12.47588 -12.29992 -12.21253 -12.12540 -12.06638 -12.04306 -11.86435 -11.53286 -11.52583 -10.93313 -10.68504 -10.48917 -9.51285 -8.91381 -7.84325 -5.20431 1.46732 1.49927 1.56073 1.66501 2.05484 2.49056 2.91556 3.33444 3.36463 3.58115 3.77072 3.83233 3.91714 4.03407 4.11124 4.19593 4.23775 4.35192 4.48917 4.53242 4.60189 4.60833 4.64943 4.73981 4.81198 4.87526 4.90484 4.94850 5.00048 5.03372 5.06519 5.14623 5.22283 5.26688 5.33768 5.44814 5.54045 5.64435 6.09908 6.36800 6.71550 7.02618 7.20528 7.71259 8.42018 9.26816 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018699 B = 0.004316 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.037373 B = 6485.373975 C = 7210.121782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.086 3.914 4 H 0.085 0.915 5 C -0.172 4.172 6 C -0.097 4.097 7 C -0.120 4.120 8 C 0.518 3.482 9 O -0.597 6.597 10 N -0.612 5.612 11 C 0.092 3.908 12 C 0.133 3.867 13 H 0.136 0.864 14 C -0.127 4.127 15 C 0.097 3.903 16 H 0.110 0.890 17 C 0.188 3.812 18 N -0.618 5.618 19 C -0.232 4.232 20 H 0.097 0.903 21 C -0.072 4.072 22 N -0.959 5.959 23 Si 0.979 3.021 24 H -0.276 1.276 25 H -0.304 1.304 26 H -0.272 1.272 27 H 0.053 0.947 28 H 0.086 0.914 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.121 0.879 37 H 0.049 0.951 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.017 0.983 42 H -0.007 1.007 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.227 14.239 -7.172 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.029 3.971 4 H 0.103 0.897 5 C -0.229 4.229 6 C -0.135 4.135 7 C -0.159 4.159 8 C 0.309 3.691 9 O -0.479 6.479 10 N -0.345 5.345 11 C -0.032 4.032 12 C 0.027 3.973 13 H 0.153 0.847 14 C -0.166 4.166 15 C -0.006 4.006 16 H 0.128 0.872 17 C 0.062 3.938 18 N -0.342 5.342 19 C -0.361 4.361 20 H 0.115 0.885 21 C -0.264 4.264 22 N -0.608 5.608 23 Si 0.807 3.193 24 H -0.202 1.202 25 H -0.230 1.230 26 H -0.198 1.198 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.139 0.861 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.035 0.965 42 H 0.011 0.989 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.556 13.961 -7.547 20.237 hybrid contribution 0.403 -1.499 0.115 1.557 sum -12.153 12.462 -7.431 18.927 Atomic orbital electron populations 1.22940 0.79831 1.03367 1.00999 1.87950 1.21232 1.28883 1.95251 1.22232 0.93939 0.84647 0.96286 0.89710 1.22251 1.02659 1.02040 0.95946 1.21428 0.96539 1.02696 0.92796 1.21568 0.93268 1.05027 0.96053 1.21083 0.92404 0.75411 0.80241 1.90624 1.38363 1.53091 1.65864 1.49452 1.09572 1.67389 1.08109 1.23211 0.88215 1.00398 0.91364 1.23586 0.94156 0.84334 0.95238 0.84692 1.24348 0.98408 0.99024 0.94832 1.24526 0.89413 0.96248 0.90439 0.87178 1.21471 0.90885 0.90469 0.90977 1.45490 1.32292 1.07042 1.49388 1.19526 1.10673 0.87144 1.18729 0.88538 1.25686 0.98238 1.01491 1.01028 1.70167 1.21573 1.28060 1.41011 0.85146 0.76959 0.78786 0.78404 1.20208 1.23036 1.19799 0.92876 0.89581 0.92773 0.91258 0.90195 0.93180 0.89482 0.93463 0.89248 0.86100 0.93276 0.87652 0.87464 0.90401 0.96469 0.98853 0.94762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.82 113.37 1.23 1.62 16 2 O -0.41 -9.71 9.88 -148.98 -1.47 -11.18 16 3 C 0.09 1.68 2.72 30.60 0.08 1.76 16 4 H 0.08 1.23 7.79 -2.39 -0.02 1.21 16 5 C -0.17 -2.86 9.53 71.98 0.69 -2.17 16 6 C -0.10 -2.43 4.21 30.60 0.13 -2.31 16 7 C -0.12 -3.18 4.88 29.85 0.15 -3.03 16 8 C 0.52 18.85 7.90 87.66 0.69 19.55 16 9 O -0.60 -26.15 16.36 -3.02 -0.05 -26.20 16 10 N -0.61 -22.24 2.98 -763.92 -2.28 -24.51 16 11 C 0.09 2.88 5.98 87.16 0.52 3.40 16 12 C 0.13 4.57 5.47 46.93 0.26 4.82 16 13 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 14 C -0.13 -3.97 6.94 34.15 0.24 -3.73 16 15 C 0.10 3.85 5.27 47.55 0.25 4.10 16 16 H 0.11 4.37 8.08 -2.39 -0.02 4.35 16 17 C 0.19 9.63 4.81 87.16 0.42 10.05 16 18 N -0.62 -30.00 3.02 -648.56 -1.96 -31.96 16 19 C -0.23 -12.39 10.37 84.03 0.87 -11.52 16 20 H 0.10 4.71 7.83 -2.91 -0.02 4.69 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 22 N -0.96 -59.43 10.56 21.65 0.23 -59.21 16 23 Si 0.98 45.58 29.55 68.60 2.03 47.60 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 27 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 28 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.05 0.70 8.08 -2.39 -0.02 0.68 16 30 H 0.07 0.95 7.87 -2.39 -0.02 0.93 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 2.07 8.10 -2.39 -0.02 2.05 16 34 H 0.05 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.09 2.56 7.82 -2.39 -0.02 2.55 16 36 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.11 2.27 8.14 -2.39 -0.02 2.26 16 39 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.02 0.99 7.46 -2.39 -0.02 0.97 16 42 H -0.01 -0.41 7.68 -2.39 -0.02 -0.43 16 43 H 0.24 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -75.06 346.34 3.45 -71.61 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.96 Total: 14.92 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 5.99 Total: 18.93 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -4.01 Total: -115.68 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -1.52 Total: -37.38 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -75.06 3.45 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.560 kcal (2) G-P(sol) polarization free energy of solvation -75.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds