Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00462 * 2 1 4 4 O 1.42901 * 109.46970 * 134.99927 * 3 2 1 5 5 C 1.42902 * 113.99856 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47385 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99659 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00149 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00218 * 5.18187 * 8 6 5 10 10 C 1.52993 * 109.47245 * 275.09556 * 9 8 6 11 11 C 1.46502 * 119.99999 * 185.18593 * 8 6 5 12 12 H 1.09000 * 110.88496 * 10.36348 * 11 8 6 13 13 C 1.55157 * 111.00429 * 246.48557 * 11 8 6 14 14 C 1.54319 * 102.94253 * 277.38660 * 13 11 8 15 15 N 1.47017 * 107.27208 * 337.80925 * 14 13 11 16 16 C 1.36944 * 125.65040 * 178.98494 * 15 14 13 17 17 H 1.07998 * 120.00122 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99681 * 359.97438 * 16 15 14 19 19 N 1.31618 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99564 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47377 * 120.00176 * 20 18 16 23 23 H 1.48508 * 109.46917 * 239.99619 * 20 18 16 24 24 C 1.47421 * 108.70617 * 358.93682 * 15 14 13 25 25 H 1.07993 * 120.00249 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99675 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99675 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46648 * 15.00213 * 3 2 1 29 29 H 1.09001 * 109.47073 * 255.00112 * 3 2 1 30 30 H 1.09004 * 109.46952 * 59.99840 * 5 4 3 31 31 H 1.09007 * 109.46852 * 300.00157 * 5 4 3 32 32 H 1.09002 * 109.46666 * 35.09713 * 9 8 6 33 33 H 1.08998 * 109.47078 * 155.09050 * 9 8 6 34 34 H 1.08998 * 109.47169 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47417 * 299.99697 * 10 9 8 36 36 H 1.08998 * 109.47495 * 59.99750 * 10 9 8 37 37 H 1.09000 * 110.71750 * 35.75287 * 13 11 8 38 38 H 1.09003 * 110.72300 * 159.02262 * 13 11 8 39 39 H 1.09010 * 109.88375 * 97.22265 * 14 13 11 40 40 H 1.08998 * 109.88787 * 218.23375 * 14 13 11 41 41 H 0.97002 * 119.99785 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.36840 * 265.29285 * 24 15 14 43 43 H 1.08999 * 110.37225 * 142.96785 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9527 5 6 3.9079 2.4350 1.0329 6 6 4.9942 2.2565 2.0620 7 8 5.0898 1.2100 2.6675 8 7 5.8595 3.2597 2.3094 9 6 5.6763 4.5614 1.6626 10 6 6.3242 4.5380 0.2768 11 6 6.9833 3.0485 3.2252 12 1 7.0865 1.9930 3.4768 13 6 6.8283 3.9126 4.5045 14 6 7.3735 5.2867 4.0616 15 7 8.2529 5.0557 2.9064 16 6 8.9197 6.0242 2.2046 17 1 9.5449 5.7508 1.3674 18 6 8.7921 7.3575 2.5692 19 7 8.0298 7.6908 3.5891 20 14 9.7011 8.6788 1.6113 21 1 10.4844 8.0478 0.5189 22 1 8.7214 9.6324 1.0316 23 1 10.6206 9.4066 2.5226 24 6 8.2991 3.6085 2.6293 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3856 2.1160 0.2660 29 1 2.4756 1.4867 -0.9927 30 1 3.2679 3.2693 1.3205 31 1 4.3581 2.6406 0.0617 32 1 4.6112 4.7705 1.5624 33 1 6.1434 5.3373 2.2691 34 1 6.1883 5.5066 -0.2042 35 1 7.3892 4.3288 0.3771 36 1 5.8571 3.7620 -0.3296 37 1 5.7801 3.9886 4.7938 38 1 7.4259 3.5052 5.3199 39 1 6.5479 5.9382 3.7746 40 1 7.9384 5.7413 4.8755 41 1 7.9404 8.6226 3.8436 42 1 9.1607 3.1555 3.1199 43 1 8.3355 3.4288 1.5548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698575962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = -16.074994 kcal Electronic energy + Delta-G solvation = -23290.398718 eV Core-core repulsion = 19952.034445 eV Total energy + Delta-G solvation = -3338.364274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02400 -38.21021 -37.12238 -34.61468 -34.01270 -32.45622 -30.30313 -29.00435 -28.52955 -27.16228 -25.59972 -24.43668 -22.74747 -20.89043 -20.19110 -20.09792 -18.50705 -17.41034 -16.97444 -16.45447 -16.20865 -16.02853 -15.00629 -14.72674 -14.63115 -13.96768 -13.81422 -13.47985 -13.32879 -12.90942 -12.70837 -12.28410 -12.13208 -12.07109 -11.92827 -11.84406 -11.30706 -11.15988 -11.02556 -10.92878 -10.85140 -10.48103 -10.16224 -10.12555 -10.03194 -9.86926 -9.68724 -9.51072 -9.21822 -8.70767 -8.18954 -6.89307 -5.78377 -3.11897 1.89897 2.87152 3.02481 3.34357 3.41339 3.43027 3.96710 4.43779 4.66216 4.86098 4.90611 5.04635 5.09865 5.21396 5.28793 5.36982 5.42528 5.48080 5.52386 5.61169 5.67267 5.83771 5.87348 5.94853 6.18790 6.24135 6.31633 6.32436 6.38971 6.43693 6.52596 6.61979 6.71248 6.87018 6.93290 7.16619 7.49833 7.53189 7.75241 7.85540 8.16641 8.50334 9.14621 9.74406 10.40355 11.32901 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.003995 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.312923 B = 7006.855246 C = 7525.400212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.085 3.915 4 O -0.361 6.361 5 C 0.045 3.955 6 C 0.513 3.487 7 O -0.535 6.535 8 N -0.584 5.584 9 C 0.086 3.914 10 C -0.161 4.161 11 C 0.126 3.874 12 H 0.097 0.903 13 C -0.156 4.156 14 C 0.174 3.826 15 N -0.602 5.602 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.908 3.092 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.123 3.877 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.133 0.867 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.031 0.969 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 -8.582 -6.693 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.164 4.164 3 C 0.009 3.991 4 O -0.279 6.279 5 C -0.035 4.035 6 C 0.300 3.700 7 O -0.412 6.412 8 N -0.317 5.317 9 C -0.036 4.036 10 C -0.219 4.219 11 C 0.021 3.979 12 H 0.115 0.885 13 C -0.196 4.196 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.003 4.003 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.048 0.952 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.759 -9.058 -6.255 15.392 hybrid contribution 0.417 1.170 -0.686 1.419 sum -10.342 -7.888 -6.940 14.742 Atomic orbital electron populations 1.23820 0.95507 1.02230 1.00488 1.22738 0.95600 0.98266 0.99813 1.21601 0.88948 0.96043 0.92526 1.88025 1.44220 1.35400 1.60281 1.22366 0.93337 0.88605 0.99178 1.20124 0.82576 0.83893 0.83404 1.90675 1.72674 1.27484 1.50335 1.47802 1.26851 1.12075 1.45005 1.22068 0.99609 0.86259 0.95677 1.22199 1.02875 1.00842 0.95998 1.22242 0.86141 0.99835 0.89636 0.88492 1.23274 1.00846 0.99021 0.96413 1.21219 0.93658 0.90221 0.89941 1.44553 1.54422 0.99834 1.34058 1.19030 1.21393 0.85651 1.09033 0.90476 1.24759 1.00120 0.97031 0.98369 1.69967 1.42018 1.16422 1.28464 0.86101 0.78976 0.82038 0.78975 1.20587 1.21822 1.21869 1.21958 0.93310 0.86753 0.98309 0.87801 0.88433 0.86452 0.92640 0.92162 0.90459 0.90090 0.92638 0.84970 0.91839 0.90727 0.94549 0.91894 0.91382 0.93208 0.93816 0.93783 0.95184 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 14.31 29.01 0.42 -1.06 16 2 C -0.15 -1.44 9.89 -36.03 -0.36 -1.80 16 3 C 0.09 0.90 6.35 36.01 0.23 1.13 16 4 O -0.36 -5.31 9.86 -55.14 -0.54 -5.85 16 5 C 0.04 0.61 5.09 36.00 0.18 0.79 16 6 C 0.51 8.94 7.71 -10.99 -0.08 8.85 16 7 O -0.53 -11.21 15.94 -14.36 -0.23 -11.43 16 8 N -0.58 -10.05 2.52 -163.68 -0.41 -10.46 16 9 C 0.09 1.42 5.04 -4.05 -0.02 1.40 16 10 C -0.16 -2.49 9.99 37.15 0.37 -2.12 16 11 C 0.13 2.30 3.61 -65.78 -0.24 2.06 16 12 H 0.10 1.79 7.12 -51.93 -0.37 1.42 16 13 C -0.16 -2.92 6.56 -24.90 -0.16 -3.09 16 14 C 0.17 3.91 4.30 -3.07 -0.01 3.90 16 15 N -0.60 -13.81 2.19 -170.07 -0.37 -14.19 16 16 C -0.22 -5.64 10.28 -15.06 -0.15 -5.79 16 17 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 19 N -0.92 -25.18 10.31 55.49 0.57 -24.61 16 20 Si 0.91 20.94 29.55 -169.99 -5.02 15.92 16 21 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.12 2.43 6.05 -2.53 -0.02 2.42 16 25 H 0.10 0.69 8.06 -52.49 -0.42 0.27 16 26 H 0.10 0.68 7.90 -52.48 -0.41 0.27 16 27 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 28 H 0.06 0.51 7.86 -51.93 -0.41 0.10 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.90 7.28 -51.93 -0.38 0.53 16 31 H 0.08 0.95 6.36 -51.93 -0.33 0.62 16 32 H 0.06 0.78 6.70 -51.93 -0.35 0.43 16 33 H 0.13 2.68 3.73 -51.93 -0.19 2.49 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.32 5.62 -51.93 -0.29 1.03 16 36 H 0.04 0.48 6.32 -51.93 -0.33 0.15 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 1.21 5.81 -51.92 -0.30 0.91 16 40 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 41 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.94 6.01 -51.93 -0.31 0.63 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -29.89 337.56 -7.44 -37.33 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.57 Total: 1.79 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 0.06 Total: 6.42 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: -0.21 Total: -49.25 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.77 Total: -17.29 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.89 -7.44 -37.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698575962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.251 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds