Wall clock time and date at job start Tue Mar 31 2020 06:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50699 * 120.00462 * 2 1 4 4 O 1.42901 * 109.46970 * 134.99927 * 3 2 1 5 5 C 1.42902 * 113.99856 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47385 * 180.02562 * 5 4 3 7 7 O 1.21287 * 119.99659 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00149 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00218 * 5.18187 * 8 6 5 10 10 C 1.52993 * 109.47245 * 275.09556 * 9 8 6 11 11 C 1.46502 * 119.99999 * 185.18593 * 8 6 5 12 12 H 1.09000 * 110.88496 * 10.36348 * 11 8 6 13 13 C 1.55157 * 111.00429 * 246.48557 * 11 8 6 14 14 C 1.54319 * 102.94253 * 277.38660 * 13 11 8 15 15 N 1.47017 * 107.27208 * 337.80925 * 14 13 11 16 16 C 1.36944 * 125.65040 * 178.98494 * 15 14 13 17 17 H 1.07998 * 120.00122 * 179.97438 * 16 15 14 18 18 C 1.38813 * 119.99681 * 359.97438 * 16 15 14 19 19 N 1.31618 * 120.00076 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99564 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47378 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47377 * 120.00176 * 20 18 16 23 23 H 1.48508 * 109.46917 * 239.99619 * 20 18 16 24 24 C 1.47421 * 108.70617 * 358.93682 * 15 14 13 25 25 H 1.07993 * 120.00249 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.99675 * 359.97438 * 1 2 3 27 27 H 1.08003 * 119.99675 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.46648 * 15.00213 * 3 2 1 29 29 H 1.09001 * 109.47073 * 255.00112 * 3 2 1 30 30 H 1.09004 * 109.46952 * 59.99840 * 5 4 3 31 31 H 1.09007 * 109.46852 * 300.00157 * 5 4 3 32 32 H 1.09002 * 109.46666 * 35.09713 * 9 8 6 33 33 H 1.08998 * 109.47078 * 155.09050 * 9 8 6 34 34 H 1.08998 * 109.47169 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47417 * 299.99697 * 10 9 8 36 36 H 1.08998 * 109.47495 * 59.99750 * 10 9 8 37 37 H 1.09000 * 110.71750 * 35.75287 * 13 11 8 38 38 H 1.09003 * 110.72300 * 159.02262 * 13 11 8 39 39 H 1.09010 * 109.88375 * 97.22265 * 14 13 11 40 40 H 1.08998 * 109.88787 * 218.23375 * 14 13 11 41 41 H 0.97002 * 119.99785 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.36840 * 265.29285 * 24 15 14 43 43 H 1.08999 * 110.37225 * 142.96785 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9527 5 6 3.9079 2.4350 1.0329 6 6 4.9942 2.2565 2.0620 7 8 5.0898 1.2100 2.6675 8 7 5.8595 3.2597 2.3094 9 6 5.6763 4.5614 1.6626 10 6 6.3242 4.5380 0.2768 11 6 6.9833 3.0485 3.2252 12 1 7.0865 1.9930 3.4768 13 6 6.8283 3.9126 4.5045 14 6 7.3735 5.2867 4.0616 15 7 8.2529 5.0557 2.9064 16 6 8.9197 6.0242 2.2046 17 1 9.5449 5.7508 1.3674 18 6 8.7921 7.3575 2.5692 19 7 8.0298 7.6908 3.5891 20 14 9.7011 8.6788 1.6113 21 1 10.4844 8.0478 0.5189 22 1 8.7214 9.6324 1.0316 23 1 10.6206 9.4066 2.5226 24 6 8.2991 3.6085 2.6293 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 1.3856 2.1160 0.2660 29 1 2.4756 1.4867 -0.9927 30 1 3.2679 3.2693 1.3205 31 1 4.3581 2.6406 0.0617 32 1 4.6112 4.7705 1.5624 33 1 6.1434 5.3373 2.2691 34 1 6.1883 5.5066 -0.2042 35 1 7.3892 4.3288 0.3771 36 1 5.8571 3.7620 -0.3296 37 1 5.7801 3.9886 4.7938 38 1 7.4259 3.5052 5.3199 39 1 6.5479 5.9382 3.7746 40 1 7.9384 5.7413 4.8755 41 1 7.9404 8.6226 3.8436 42 1 9.1607 3.1555 3.1199 43 1 8.3355 3.4288 1.5548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698575962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:50 Heat of formation + Delta-G solvation = -32.625557 kcal Electronic energy + Delta-G solvation = -23291.116405 eV Core-core repulsion = 19952.034445 eV Total energy + Delta-G solvation = -3339.081960 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.41824 -39.45730 -38.43538 -36.15209 -34.78083 -34.21360 -31.88361 -30.53162 -29.87717 -28.58424 -26.56489 -26.18295 -24.06876 -22.29437 -21.91200 -20.95152 -19.87385 -18.85142 -18.59343 -17.52201 -17.32181 -17.26762 -16.61176 -16.08495 -15.86030 -15.60209 -15.27343 -14.70784 -14.52611 -14.18066 -13.94646 -13.71480 -13.67364 -13.36504 -13.21176 -13.12893 -12.88118 -12.81884 -12.63029 -12.28894 -12.00349 -11.94870 -11.88698 -11.81408 -11.51419 -11.40268 -10.97110 -10.68491 -10.59149 -10.24679 -9.64502 -8.80150 -7.77446 -5.11238 1.20484 1.50087 1.52831 1.54705 1.60776 1.83086 2.54383 2.94745 3.43028 3.54215 3.70358 3.91670 4.00103 4.04941 4.10797 4.14656 4.23025 4.30682 4.32894 4.45688 4.53379 4.60043 4.62261 4.71014 4.78545 4.85806 4.98085 4.99349 5.03263 5.07283 5.25503 5.54033 5.55041 5.64948 5.67273 5.68895 5.74202 5.84539 6.10454 6.23957 6.50875 7.15649 7.17063 7.82453 8.47804 9.32738 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027957 B = 0.003995 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.312923 B = 7006.855246 C = 7525.400212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C 0.081 3.919 4 O -0.393 6.393 5 C 0.050 3.950 6 C 0.510 3.490 7 O -0.575 6.575 8 N -0.583 5.583 9 C 0.089 3.911 10 C -0.154 4.154 11 C 0.133 3.867 12 H 0.100 0.900 13 C -0.143 4.143 14 C 0.189 3.811 15 N -0.610 5.610 16 C -0.220 4.220 17 H 0.080 0.920 18 C -0.057 4.057 19 N -0.948 5.948 20 Si 0.966 3.034 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.302 1.302 24 C 0.125 3.875 25 H 0.117 0.883 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.030 0.970 40 H 0.005 0.995 41 H 0.244 0.756 42 H 0.034 0.966 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 -9.079 -8.355 17.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C 0.006 3.994 4 O -0.312 6.312 5 C -0.029 4.029 6 C 0.299 3.701 7 O -0.455 6.455 8 N -0.315 5.315 9 C -0.033 4.033 10 C -0.212 4.212 11 C 0.029 3.971 12 H 0.118 0.882 13 C -0.182 4.182 14 C 0.064 3.936 15 N -0.336 5.336 16 C -0.349 4.349 17 H 0.098 0.902 18 C -0.251 4.251 19 N -0.597 5.597 20 Si 0.797 3.203 21 H -0.194 1.194 22 H -0.220 1.220 23 H -0.230 1.230 24 C -0.001 4.001 25 H 0.135 0.865 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.055 -9.570 -7.948 17.323 hybrid contribution 0.777 1.260 -0.181 1.491 sum -11.278 -8.310 -8.129 16.196 Atomic orbital electron populations 1.24058 0.94928 1.03531 0.97769 1.22774 0.96342 0.97905 1.02375 1.21823 0.88326 0.96845 0.92446 1.87989 1.45431 1.36047 1.61774 1.22372 0.92615 0.89137 0.98727 1.20825 0.82863 0.82922 0.83498 1.90655 1.73801 1.29017 1.52044 1.47834 1.26466 1.12523 1.44707 1.22006 1.01229 0.84679 0.95380 1.22110 1.01321 1.02020 0.95747 1.22072 0.86069 0.99547 0.89458 0.88241 1.23140 1.01215 0.96819 0.97060 1.20921 0.92386 0.91742 0.88562 1.44659 1.54105 1.00948 1.33919 1.19275 1.20650 0.86206 1.08768 0.90219 1.25406 1.01351 0.98838 0.99457 1.70153 1.43567 1.16041 1.29947 0.85180 0.77680 0.79624 0.77855 1.19350 1.21990 1.22963 1.22026 0.94276 0.84943 0.98829 0.86518 0.87094 0.87438 0.91025 0.90666 0.88042 0.87805 0.89615 0.88637 0.91462 0.93233 0.91784 0.91141 0.90225 0.95243 0.97633 0.94606 0.94812 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.31 67.78 0.97 -1.29 16 2 C -0.18 -3.17 9.89 25.65 0.25 -2.92 16 3 C 0.08 1.50 6.35 71.24 0.45 1.96 16 4 O -0.39 -10.76 9.86 -129.94 -1.28 -12.04 16 5 C 0.05 1.23 5.09 71.23 0.36 1.59 16 6 C 0.51 16.82 7.71 87.66 0.68 17.50 16 7 O -0.58 -23.61 15.94 15.99 0.25 -23.35 16 8 N -0.58 -19.14 2.52 -790.14 -1.99 -21.13 16 9 C 0.09 2.78 5.04 86.38 0.44 3.21 16 10 C -0.15 -4.42 9.99 71.98 0.72 -3.70 16 11 C 0.13 4.76 3.61 46.38 0.17 4.93 16 12 H 0.10 3.58 7.12 -2.39 -0.02 3.56 16 13 C -0.14 -5.31 6.56 31.78 0.21 -5.10 16 14 C 0.19 8.65 4.30 86.73 0.37 9.02 16 15 N -0.61 -28.13 2.19 -691.99 -1.52 -29.65 16 16 C -0.22 -11.14 10.28 84.03 0.86 -10.27 16 17 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.06 -3.01 5.49 84.86 0.47 -2.55 16 19 N -0.95 -53.03 10.31 21.65 0.22 -52.80 16 20 Si 0.97 43.25 29.55 68.60 2.03 45.28 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 24 C 0.13 4.85 6.05 86.86 0.53 5.38 16 25 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 26 H 0.11 1.20 7.90 -2.91 -0.02 1.18 16 27 H 0.11 2.09 8.06 -2.91 -0.02 2.06 16 28 H 0.07 1.07 7.86 -2.38 -0.02 1.05 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.97 7.28 -2.38 -0.02 1.95 16 31 H 0.10 2.03 6.36 -2.38 -0.02 2.02 16 32 H 0.09 2.15 6.70 -2.39 -0.02 2.13 16 33 H 0.10 3.83 3.73 -2.39 -0.01 3.82 16 34 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.67 5.62 -2.39 -0.01 1.66 16 36 H 0.06 1.46 6.32 -2.39 -0.02 1.45 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.03 1.48 5.81 -2.38 -0.01 1.47 16 40 H 0.01 0.29 7.50 -2.39 -0.02 0.27 16 41 H 0.24 13.51 8.31 -92.71 -0.77 12.74 16 42 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 2.08 6.01 -2.39 -0.01 2.06 16 Total: -1.00 -65.36 337.56 5.18 -60.18 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.99 Total: 15.75 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 6.47 Total: 17.76 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -3.29 Total: -103.59 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -1.03 Total: -35.39 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -65.36 5.18 -60.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698575962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.556 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds