Wall clock time and date at job start Tue Mar 31 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50695 * 120.00080 * 2 1 4 4 O 1.42900 * 109.47288 * 134.99324 * 3 2 1 5 5 C 1.42900 * 114.00235 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47271 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99751 * 359.97438 * 6 5 4 8 8 N 1.34775 * 119.99953 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00068 * 359.97438 * 8 6 5 10 10 C 1.53001 * 109.47117 * 270.00186 * 9 8 6 11 11 C 1.46497 * 119.99901 * 179.97438 * 8 6 5 12 12 H 1.09000 * 110.64561 * 179.29793 * 11 8 6 13 13 C 1.55164 * 110.71706 * 302.43429 * 11 8 6 14 14 C 1.55126 * 101.48202 * 153.73528 * 13 11 8 15 15 N 1.47424 * 104.94333 * 323.22168 * 14 13 11 16 16 C 1.36942 * 125.64814 * 204.03616 * 15 14 13 17 17 H 1.07991 * 120.00095 * 161.47548 * 16 15 14 18 18 C 1.38813 * 119.99843 * 341.47901 * 16 15 14 19 19 N 1.31625 * 120.00002 * 157.61821 * 18 16 15 20 20 Si 1.86800 * 120.00153 * 337.61475 * 18 16 15 21 21 H 1.48504 * 109.46981 * 84.53975 * 20 18 16 22 22 H 1.48494 * 109.47171 * 204.53453 * 20 18 16 23 23 H 1.48501 * 109.47404 * 324.53877 * 20 18 16 24 24 C 1.47016 * 108.70532 * 24.00765 * 15 14 13 25 25 H 1.07995 * 119.99815 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.99647 * 0.02562 * 1 2 3 27 27 H 1.08001 * 119.99956 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47485 * 14.99843 * 3 2 1 29 29 H 1.08998 * 109.47343 * 254.99995 * 3 2 1 30 30 H 1.08993 * 109.47193 * 59.99803 * 5 4 3 31 31 H 1.09011 * 109.47020 * 300.00197 * 5 4 3 32 32 H 1.09003 * 109.47348 * 150.00472 * 9 8 6 33 33 H 1.08996 * 109.47310 * 29.99895 * 9 8 6 34 34 H 1.09002 * 109.47452 * 300.00158 * 10 9 8 35 35 H 1.08999 * 109.47252 * 59.99796 * 10 9 8 36 36 H 1.09000 * 109.47487 * 180.02562 * 10 9 8 37 37 H 1.08993 * 111.00679 * 271.94025 * 13 11 8 38 38 H 1.09003 * 111.00451 * 35.79756 * 13 11 8 39 39 H 1.08999 * 110.41907 * 204.29460 * 14 13 11 40 40 H 1.08997 * 110.30062 * 82.09401 * 14 13 11 41 41 H 0.96991 * 120.00136 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.88271 * 239.52533 * 24 15 14 43 43 H 1.08996 * 109.88846 * 118.35375 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 8 3.1266 1.2413 0.9528 5 6 3.9084 2.4349 1.0322 6 6 4.9946 2.2565 2.0615 7 8 5.0895 1.2103 2.6677 8 7 5.8597 3.2598 2.3090 9 6 5.7446 4.5236 1.5771 10 6 6.5879 4.4533 0.3024 11 6 6.9153 3.0865 3.3100 12 1 7.5316 3.9830 3.3777 13 6 6.3074 2.7326 4.6930 14 6 7.4749 1.9530 5.3530 15 7 8.0861 1.1822 4.2550 16 6 8.8162 0.0324 4.3970 17 1 8.9689 -0.6185 3.5488 18 6 9.3599 -0.2966 5.6311 19 7 9.6664 -1.5475 5.9029 20 14 9.6567 1.0359 6.9061 21 1 8.4063 1.2774 7.6700 22 1 10.7288 0.6006 7.8367 23 1 10.0707 2.2891 6.2254 24 6 7.7814 1.8520 2.9822 25 1 -0.5399 -0.9353 -0.0004 26 1 -0.5399 0.9353 -0.0004 27 1 1.8500 -0.9353 0.0004 28 1 1.3856 2.1161 0.2659 29 1 2.4756 1.4867 -0.9926 30 1 3.2689 3.2696 1.3191 31 1 4.3588 2.6395 0.0608 32 1 6.1016 5.3405 2.2043 33 1 4.7014 4.6970 1.3134 34 1 7.6313 4.2799 0.5660 35 1 6.2311 3.6364 -0.3248 36 1 6.5027 5.3938 -0.2420 37 1 6.0679 3.6341 5.2568 38 1 5.4284 2.0976 4.5825 39 1 7.0961 1.2810 6.1232 40 1 8.1998 2.6466 5.7790 41 1 10.0459 -1.7774 6.7653 42 1 7.2299 1.1750 2.3298 43 1 8.7060 2.1659 2.4978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698575963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:53 Heat of formation + Delta-G solvation = -13.710112 kcal Electronic energy + Delta-G solvation = -23054.542353 eV Core-core repulsion = 19716.280628 eV Total energy + Delta-G solvation = -3338.261725 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25562 -38.18411 -36.80604 -35.63557 -34.03463 -32.38655 -30.64514 -29.53649 -28.70374 -27.31433 -25.70827 -23.99321 -23.40544 -21.37037 -20.51453 -20.25216 -18.65882 -17.34575 -16.91449 -16.69313 -16.48645 -15.56218 -15.31682 -15.02916 -14.74594 -14.33146 -13.93391 -13.60496 -13.45136 -13.35735 -12.80784 -12.73365 -12.53895 -12.47344 -12.19227 -11.81318 -11.63868 -11.39670 -11.19622 -11.16219 -10.94883 -10.87298 -10.77015 -10.15385 -10.00407 -9.92953 -9.56788 -9.37618 -9.13212 -8.55998 -8.41769 -6.86530 -5.80173 -3.08317 1.89014 2.76422 2.81755 3.44957 3.55463 3.58740 3.76897 4.46794 4.65454 4.67578 4.78944 4.84044 4.92735 4.94704 5.02305 5.10054 5.10908 5.18798 5.23625 5.33482 5.44624 5.46690 5.54567 5.60610 5.61985 5.65375 5.96483 6.01961 6.15081 6.33229 6.35921 6.37931 6.41825 6.64674 6.75570 6.89331 6.95556 7.10006 7.52243 7.87579 8.41795 8.46128 8.99017 9.83816 10.33600 11.36551 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018788 B = 0.004499 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.922954 B = 6221.912190 C = 7158.647602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.087 3.913 4 O -0.357 6.357 5 C 0.046 3.954 6 C 0.505 3.495 7 O -0.483 6.483 8 N -0.607 5.607 9 C 0.104 3.896 10 C -0.175 4.175 11 C 0.137 3.863 12 H 0.093 0.907 13 C -0.143 4.143 14 C 0.117 3.883 15 N -0.601 5.601 16 C -0.231 4.231 17 H 0.090 0.910 18 C 0.018 3.982 19 N -0.911 5.911 20 Si 0.884 3.116 21 H -0.286 1.286 22 H -0.304 1.304 23 H -0.278 1.278 24 C 0.132 3.868 25 H 0.105 0.895 26 H 0.096 0.904 27 H 0.120 0.880 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.048 0.952 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.383 15.490 -13.804 25.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.011 3.989 4 O -0.275 6.275 5 C -0.034 4.034 6 C 0.291 3.709 7 O -0.354 6.354 8 N -0.344 5.344 9 C -0.019 4.019 10 C -0.233 4.233 11 C 0.033 3.967 12 H 0.111 0.889 13 C -0.182 4.182 14 C -0.009 4.009 15 N -0.328 5.328 16 C -0.358 4.358 17 H 0.107 0.893 18 C -0.179 4.179 19 N -0.556 5.556 20 Si 0.714 3.286 21 H -0.213 1.213 22 H -0.232 1.232 23 H -0.204 1.204 24 C 0.006 3.994 25 H 0.123 0.877 26 H 0.115 0.885 27 H 0.138 0.862 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.040 0.960 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.179 14.530 -13.251 24.842 hybrid contribution 0.254 1.077 0.518 1.222 sum -14.925 15.607 -12.733 25.069 Atomic orbital electron populations 1.23812 0.95478 1.02210 1.00477 1.22755 0.95629 0.98356 0.99777 1.21596 0.88828 0.96133 0.92387 1.88094 1.44147 1.35032 1.60207 1.22322 0.93311 0.88880 0.98890 1.20113 0.82555 0.84119 0.84130 1.90865 1.70707 1.25837 1.47991 1.47938 1.31578 1.14230 1.40612 1.21591 1.00444 0.86288 0.93615 1.22264 1.01531 1.01980 0.97516 1.22171 0.87769 0.99259 0.87453 0.88881 1.23191 1.00438 0.99905 0.94715 1.21907 0.92153 0.94046 0.92799 1.44535 1.60532 1.27427 1.00262 1.18635 1.24967 0.94453 0.97774 0.89281 1.24968 0.99820 0.96132 0.97028 1.69862 1.47029 1.15753 1.22952 0.86940 0.77177 0.82856 0.81589 1.21287 1.23205 1.20387 1.21567 0.95322 0.91984 0.90517 0.87719 0.88539 0.86242 0.92764 0.92211 0.90730 0.90547 0.90050 0.90734 0.91666 0.92458 0.91591 0.92030 0.89345 0.92285 0.96000 0.92887 0.93409 0.95643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.48 14.31 29.01 0.42 -1.06 16 2 C -0.15 -1.47 9.89 -36.03 -0.36 -1.83 16 3 C 0.09 0.85 6.35 36.00 0.23 1.08 16 4 O -0.36 -5.05 9.86 -55.14 -0.54 -5.60 16 5 C 0.05 0.53 4.97 36.01 0.18 0.71 16 6 C 0.51 8.07 6.85 -10.99 -0.08 7.99 16 7 O -0.48 -10.55 12.86 -14.35 -0.18 -10.73 16 8 N -0.61 -8.31 2.54 -164.03 -0.42 -8.73 16 9 C 0.10 0.88 5.91 -4.04 -0.02 0.86 16 10 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 11 C 0.14 2.31 3.43 -66.09 -0.23 2.09 16 12 H 0.09 1.35 7.87 -51.93 -0.41 0.94 16 13 C -0.14 -2.71 6.44 -24.46 -0.16 -2.87 16 14 C 0.12 2.76 4.70 -2.41 -0.01 2.75 16 15 N -0.60 -15.93 3.21 -169.94 -0.54 -16.47 16 16 C -0.23 -7.09 10.57 -15.06 -0.16 -7.25 16 17 H 0.09 2.91 8.06 -52.49 -0.42 2.49 16 18 C 0.02 0.56 5.43 -17.43 -0.09 0.47 16 19 N -0.91 -29.70 13.97 55.49 0.78 -28.93 16 20 Si 0.88 23.72 24.27 -169.99 -4.13 19.59 16 21 H -0.29 -7.42 6.49 56.52 0.37 -7.05 16 22 H -0.30 -8.19 7.11 56.52 0.40 -7.78 16 23 H -0.28 -7.25 6.66 56.52 0.38 -6.87 16 24 C 0.13 2.90 6.48 -3.07 -0.02 2.88 16 25 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 26 H 0.10 0.64 7.90 -52.49 -0.41 0.23 16 27 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.05 0.43 7.86 -51.93 -0.41 0.02 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.63 7.40 -51.93 -0.38 0.25 16 31 H 0.08 0.68 7.19 -51.92 -0.37 0.31 16 32 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 33 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.47 7.22 -51.93 -0.38 0.10 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.85 6.03 -51.93 -0.31 1.54 16 39 H 0.06 1.52 6.64 -51.93 -0.34 1.17 16 40 H 0.02 0.52 5.57 -51.93 -0.29 0.24 16 41 H 0.26 8.05 8.31 -40.82 -0.34 7.71 16 42 H 0.05 1.14 6.07 -51.93 -0.32 0.83 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -37.69 339.86 -6.79 -44.48 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -6.95 Total: -3.57 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 0.08 Total: 4.82 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.19 Total: -54.13 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.73 Total: -16.33 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.13 Total: 19.59 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -37.69 -6.79 -44.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698575963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.775 kcal (2) G-P(sol) polarization free energy of solvation -37.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds