Wall clock time and date at job start Tue Mar 31 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47081 * 2 1 4 4 C 1.42904 * 114.00106 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47430 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99812 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00495 * 179.97438 * 5 4 3 8 8 C 1.47151 * 121.00413 * 359.97438 * 7 5 4 9 9 C 1.53050 * 107.67839 * 122.55866 * 8 7 5 10 10 C 1.51154 * 111.10480 * 54.41287 * 9 8 7 11 11 H 1.09000 * 108.45810 * 184.60731 * 10 9 8 12 12 C 1.53989 * 113.16731 * 304.85881 * 10 9 8 13 13 H 1.09005 * 112.72073 * 284.03824 * 12 10 9 14 14 C 1.56020 * 100.38308 * 163.66482 * 12 10 9 15 15 C 1.54493 * 102.62005 * 323.13227 * 14 12 10 16 16 N 1.46466 * 113.22986 * 65.06993 * 10 9 8 17 17 C 1.36942 * 126.05237 * 29.46172 * 16 10 9 18 18 H 1.07995 * 120.00413 * 353.97258 * 17 16 10 19 19 C 1.38818 * 119.99719 * 173.97356 * 17 16 10 20 20 N 1.31615 * 119.99718 * 6.71391 * 19 17 16 21 21 Si 1.86797 * 119.99842 * 186.71259 * 19 17 16 22 22 H 1.48496 * 109.47135 * 94.99060 * 21 19 17 23 23 H 1.48507 * 109.46804 * 214.98327 * 21 19 17 24 24 H 1.48499 * 109.47143 * 334.98503 * 21 19 17 25 25 C 1.45162 * 120.71267 * 179.47451 * 7 5 4 26 26 H 1.09001 * 109.46885 * 299.99773 * 1 2 3 27 27 H 1.08995 * 109.47417 * 60.00010 * 1 2 3 28 28 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46885 * 240.00227 * 2 1 3 30 30 H 1.08997 * 109.47707 * 120.00447 * 2 1 3 31 31 H 1.09004 * 109.47413 * 59.99713 * 4 3 2 32 32 H 1.09010 * 109.46612 * 299.99908 * 4 3 2 33 33 H 1.08989 * 109.81893 * 3.01412 * 8 7 5 34 34 H 1.09003 * 109.81267 * 242.10289 * 8 7 5 35 35 H 1.08992 * 109.15569 * 293.99451 * 9 8 7 36 36 H 1.08997 * 109.10243 * 174.79535 * 9 8 7 37 37 H 1.08997 * 110.77787 * 81.42176 * 14 12 10 38 38 H 1.08998 * 110.77973 * 204.84577 * 14 12 10 39 39 H 1.08996 * 109.90410 * 263.44880 * 15 14 12 40 40 H 1.09007 * 110.05141 * 142.29745 * 15 14 12 41 41 H 0.97006 * 119.99929 * 179.97438 * 20 19 17 42 42 H 1.08997 * 108.84110 * 114.80255 * 25 7 5 43 43 H 1.09001 * 109.10269 * 355.69660 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 8 2.9610 3.7728 -0.0016 7 7 5.1209 3.2663 -0.0013 8 6 6.1806 2.2453 -0.0002 9 6 7.0600 2.4869 -1.2293 10 6 7.5733 3.9083 -1.2604 11 1 8.1232 4.0564 -2.1898 12 6 6.4504 4.9596 -1.1888 13 1 5.9159 5.0697 -2.1324 14 6 7.2760 6.2273 -0.8071 15 6 8.3469 5.6573 0.1495 16 7 8.4781 4.2201 -0.1517 17 6 9.2998 3.3335 0.4918 18 1 9.2477 2.2807 0.2569 19 6 10.1998 3.7880 1.4460 20 7 10.1736 5.0472 1.8281 21 14 11.4479 2.6125 2.1875 22 1 12.7287 2.7165 1.4434 23 1 11.6734 2.9644 3.6125 24 1 10.9337 1.2224 2.0962 25 6 5.5126 4.6641 -0.0133 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8333 0.9767 -0.8908 32 1 3.8340 0.9764 0.8893 33 1 5.7363 1.2515 -0.0534 34 1 6.7794 2.3353 0.9061 35 1 6.4757 2.2980 -2.1298 36 1 7.9070 1.8014 -1.2022 37 1 7.7404 6.6665 -1.6900 38 1 6.6492 6.9573 -0.2951 39 1 8.0303 5.7924 1.1836 40 1 9.3003 6.1595 -0.0151 41 1 10.8022 5.3648 2.4952 42 1 6.0220 4.8949 0.9223 43 1 4.6200 5.2839 -0.0985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699005674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:37 Heat of formation + Delta-G solvation = -51.763845 kcal Electronic energy + Delta-G solvation = -23487.311182 eV Core-core repulsion = 20147.399324 eV Total energy + Delta-G solvation = -3339.911858 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.21047 -38.55914 -37.41912 -35.03118 -32.85092 -31.70918 -31.63478 -29.55230 -28.33864 -26.97917 -25.02132 -23.69109 -22.95987 -22.56611 -20.10779 -19.73100 -18.21021 -17.28154 -16.62220 -16.52342 -16.25181 -15.48236 -15.17847 -14.85930 -14.50551 -13.96810 -13.93468 -13.56483 -13.25759 -12.79284 -12.65749 -12.61684 -12.36713 -12.13240 -11.59855 -11.56332 -11.44748 -11.34808 -11.15549 -11.06194 -10.79939 -10.69178 -10.19094 -10.04490 -9.93435 -9.81765 -9.65777 -9.63315 -9.41855 -8.61946 -8.19996 -6.84489 -5.76549 -3.08473 2.80754 2.91437 3.35746 3.40616 3.43765 3.88212 4.44830 4.65335 4.83447 4.95530 5.07251 5.14068 5.15120 5.16554 5.23689 5.34549 5.45348 5.48584 5.51155 5.57609 5.70788 5.75020 5.85717 5.92211 6.00444 6.12637 6.22362 6.31078 6.33920 6.41170 6.51612 6.67367 6.75951 6.85210 6.90546 7.03340 7.52159 7.60777 7.72414 7.78645 8.21360 8.42238 9.16481 9.79161 10.47531 11.35897 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.004607 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.418409 B = 6076.888047 C = 6869.329900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.047 3.953 5 C 0.513 3.487 6 O -0.534 6.534 7 N -0.597 5.597 8 C 0.111 3.889 9 C -0.130 4.130 10 C 0.170 3.830 11 H 0.019 0.981 12 C -0.116 4.116 13 H 0.076 0.924 14 C -0.141 4.141 15 C 0.176 3.824 16 N -0.595 5.595 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.005 4.005 20 N -0.917 5.917 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.126 3.874 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.252 0.748 42 H 0.076 0.924 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 -8.301 -5.009 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.033 4.033 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.330 5.330 8 C -0.011 4.011 9 C -0.169 4.169 10 C 0.062 3.938 11 H 0.036 0.964 12 C -0.136 4.136 13 H 0.095 0.905 14 C -0.180 4.180 15 C 0.051 3.949 16 N -0.320 5.320 17 C -0.356 4.356 18 H 0.097 0.903 19 C -0.202 4.202 20 N -0.564 5.564 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.207 1.207 25 C 0.004 3.996 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.095 0.905 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.188 -7.680 -4.810 15.188 hybrid contribution 1.147 -0.891 0.407 1.508 sum -11.041 -8.571 -4.403 14.655 Atomic orbital electron populations 1.21722 0.93531 1.02081 1.03417 1.22528 0.95871 0.83642 1.00149 1.88013 1.18892 1.26084 1.95415 1.22234 0.83376 0.95323 1.02361 1.20110 0.82453 0.90317 0.77124 1.90682 1.49009 1.51755 1.49587 1.47669 1.04759 1.08371 1.72222 1.21836 0.88757 0.89387 1.01121 1.21610 0.99181 0.99511 0.96605 1.20251 0.89820 0.91281 0.92446 0.96362 1.22739 0.95963 0.97567 0.97340 0.90532 1.23113 0.98428 0.96080 1.00377 1.21249 0.94682 0.83738 0.95208 1.44341 1.45447 1.05561 1.36697 1.18951 1.11398 0.89122 1.16085 0.90327 1.24796 0.99450 0.96273 0.99674 1.69967 1.38558 1.13891 1.33960 0.86192 0.81976 0.79835 0.78287 1.21715 1.21880 1.20690 1.21272 0.98322 0.80762 0.99268 0.91714 0.91748 0.91092 0.93281 0.93234 0.90420 0.90365 0.91224 0.88944 0.92665 0.90460 0.92279 0.91966 0.93906 0.93652 0.93765 0.90530 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.54 6.66 37.16 0.25 0.78 16 3 O -0.37 -5.19 9.88 -55.14 -0.54 -5.74 16 4 C 0.05 0.61 4.77 36.00 0.17 0.78 16 5 C 0.51 8.68 7.77 -10.99 -0.09 8.60 16 6 O -0.53 -11.04 15.87 -14.36 -0.23 -11.27 16 7 N -0.60 -9.95 2.92 -174.03 -0.51 -10.46 16 8 C 0.11 1.71 6.27 -3.66 -0.02 1.69 16 9 C -0.13 -2.09 5.17 -27.64 -0.14 -2.24 16 10 C 0.17 3.25 2.85 -68.36 -0.19 3.05 16 11 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 12 C -0.12 -2.02 3.83 -88.36 -0.34 -2.36 16 13 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 14 C -0.14 -2.57 6.30 -24.33 -0.15 -2.73 16 15 C 0.18 4.05 4.67 -2.75 -0.01 4.04 16 16 N -0.59 -13.84 3.13 -164.50 -0.52 -14.35 16 17 C -0.23 -5.76 9.02 -15.05 -0.14 -5.90 16 18 H 0.08 1.89 6.66 -52.49 -0.35 1.54 16 19 C -0.01 -0.14 5.48 -17.43 -0.10 -0.23 16 20 N -0.92 -25.86 10.42 55.49 0.58 -25.29 16 21 Si 0.91 21.10 29.56 -169.99 -5.02 16.08 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.13 2.27 5.43 -4.63 -0.03 2.24 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 32 H 0.08 0.86 7.89 -51.92 -0.41 0.45 16 33 H 0.07 0.82 5.99 -51.93 -0.31 0.51 16 34 H 0.09 1.67 7.47 -51.93 -0.39 1.28 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 1.27 7.01 -51.93 -0.36 0.91 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.04 7.99 -51.93 -0.42 0.63 16 39 H 0.04 1.10 7.20 -51.93 -0.37 0.72 16 40 H 0.05 1.18 7.42 -51.92 -0.39 0.79 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.08 1.54 6.89 -51.93 -0.36 1.18 16 43 H 0.08 1.46 6.92 -51.93 -0.36 1.10 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -31.18 332.44 -8.70 -39.88 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.06 Total: -0.70 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: -0.41 Total: 6.84 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.44 Total: -50.10 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.77 Total: -17.00 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.18 -8.70 -39.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.888 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds