Wall clock time and date at job start Tue Mar 31 2020 06:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47081 * 2 1 4 4 C 1.42904 * 114.00106 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.47430 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99812 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00495 * 179.97438 * 5 4 3 8 8 C 1.47151 * 121.00413 * 359.97438 * 7 5 4 9 9 C 1.53050 * 107.67839 * 122.55866 * 8 7 5 10 10 C 1.51154 * 111.10480 * 54.41287 * 9 8 7 11 11 H 1.09000 * 108.45810 * 184.60731 * 10 9 8 12 12 C 1.53989 * 113.16731 * 304.85881 * 10 9 8 13 13 H 1.09005 * 112.72073 * 284.03824 * 12 10 9 14 14 C 1.56020 * 100.38308 * 163.66482 * 12 10 9 15 15 C 1.54493 * 102.62005 * 323.13227 * 14 12 10 16 16 N 1.46466 * 113.22986 * 65.06993 * 10 9 8 17 17 C 1.36942 * 126.05237 * 29.46172 * 16 10 9 18 18 H 1.07995 * 120.00413 * 353.97258 * 17 16 10 19 19 C 1.38818 * 119.99719 * 173.97356 * 17 16 10 20 20 N 1.31615 * 119.99718 * 6.71391 * 19 17 16 21 21 Si 1.86797 * 119.99842 * 186.71259 * 19 17 16 22 22 H 1.48496 * 109.47135 * 94.99060 * 21 19 17 23 23 H 1.48507 * 109.46804 * 214.98327 * 21 19 17 24 24 H 1.48499 * 109.47143 * 334.98503 * 21 19 17 25 25 C 1.45162 * 120.71267 * 179.47451 * 7 5 4 26 26 H 1.09001 * 109.46885 * 299.99773 * 1 2 3 27 27 H 1.08995 * 109.47417 * 60.00010 * 1 2 3 28 28 H 1.08999 * 109.47271 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46885 * 240.00227 * 2 1 3 30 30 H 1.08997 * 109.47707 * 120.00447 * 2 1 3 31 31 H 1.09004 * 109.47413 * 59.99713 * 4 3 2 32 32 H 1.09010 * 109.46612 * 299.99908 * 4 3 2 33 33 H 1.08989 * 109.81893 * 3.01412 * 8 7 5 34 34 H 1.09003 * 109.81267 * 242.10289 * 8 7 5 35 35 H 1.08992 * 109.15569 * 293.99451 * 9 8 7 36 36 H 1.08997 * 109.10243 * 174.79535 * 9 8 7 37 37 H 1.08997 * 110.77787 * 81.42176 * 14 12 10 38 38 H 1.08998 * 110.77973 * 204.84577 * 14 12 10 39 39 H 1.08996 * 109.90410 * 263.44880 * 15 14 12 40 40 H 1.09007 * 110.05141 * 142.29745 * 15 14 12 41 41 H 0.97006 * 119.99929 * 179.97438 * 20 19 17 42 42 H 1.08997 * 108.84110 * 114.80255 * 25 7 5 43 43 H 1.09001 * 109.10269 * 355.69660 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8195 2.9161 -0.0012 6 8 2.9610 3.7728 -0.0016 7 7 5.1209 3.2663 -0.0013 8 6 6.1806 2.2453 -0.0002 9 6 7.0600 2.4869 -1.2293 10 6 7.5733 3.9083 -1.2604 11 1 8.1232 4.0564 -2.1898 12 6 6.4504 4.9596 -1.1888 13 1 5.9159 5.0697 -2.1324 14 6 7.2760 6.2273 -0.8071 15 6 8.3469 5.6573 0.1495 16 7 8.4781 4.2201 -0.1517 17 6 9.2998 3.3335 0.4918 18 1 9.2477 2.2807 0.2569 19 6 10.1998 3.7880 1.4460 20 7 10.1736 5.0472 1.8281 21 14 11.4479 2.6125 2.1875 22 1 12.7287 2.7165 1.4434 23 1 11.6734 2.9644 3.6125 24 1 10.9337 1.2224 2.0962 25 6 5.5126 4.6641 -0.0133 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8333 0.9767 -0.8908 32 1 3.8340 0.9764 0.8893 33 1 5.7363 1.2515 -0.0534 34 1 6.7794 2.3353 0.9061 35 1 6.4757 2.2980 -2.1298 36 1 7.9070 1.8014 -1.2022 37 1 7.7404 6.6665 -1.6900 38 1 6.6492 6.9573 -0.2951 39 1 8.0303 5.7924 1.1836 40 1 9.3003 6.1595 -0.0151 41 1 10.8022 5.3648 2.4952 42 1 6.0220 4.8949 0.9223 43 1 4.6200 5.2839 -0.0985 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699005674.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:36 Heat of formation + Delta-G solvation = -71.067981 kcal Electronic energy + Delta-G solvation = -23488.148273 eV Core-core repulsion = 20147.399324 eV Total energy + Delta-G solvation = -3340.748949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.58092 -39.90408 -38.51135 -36.53437 -34.61644 -33.20345 -32.45640 -31.17514 -29.77238 -28.30366 -26.70746 -25.23784 -24.01671 -23.63948 -21.83493 -21.11829 -19.68416 -18.51399 -18.19164 -17.63132 -17.38446 -16.85306 -16.67732 -16.20970 -15.99530 -15.65500 -15.25676 -14.70946 -14.59189 -14.15663 -13.91068 -13.87351 -13.60912 -13.25042 -13.19976 -13.06444 -12.85628 -12.63452 -12.54847 -12.30640 -12.20627 -12.13547 -11.95373 -11.67249 -11.51363 -11.44483 -11.18170 -10.75241 -10.64657 -10.61038 -9.61009 -8.77893 -7.78000 -5.10193 1.49638 1.51260 1.53707 1.59096 1.76964 2.54710 2.88974 3.42157 3.51794 3.63296 3.83723 3.93176 4.05552 4.11617 4.17979 4.24551 4.26624 4.30783 4.37961 4.45152 4.53484 4.57960 4.62460 4.76977 4.82936 4.83889 4.90560 4.98444 5.05573 5.14134 5.24928 5.27502 5.29390 5.39925 5.54039 5.61110 5.70661 5.81634 6.14341 6.26351 6.46122 7.13014 7.16324 7.86552 8.54460 9.34321 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.004607 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.418409 B = 6076.888047 C = 6869.329900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.401 6.401 4 C 0.051 3.949 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.597 5.597 8 C 0.115 3.885 9 C -0.126 4.126 10 C 0.161 3.839 11 H 0.017 0.983 12 C -0.102 4.102 13 H 0.103 0.897 14 C -0.130 4.130 15 C 0.185 3.815 16 N -0.609 5.609 17 C -0.218 4.218 18 H 0.095 0.905 19 C -0.070 4.070 20 N -0.954 5.954 21 Si 0.967 3.033 22 H -0.295 1.295 23 H -0.305 1.305 24 H -0.260 1.260 25 C 0.132 3.868 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.005 0.995 40 H 0.006 0.994 41 H 0.241 0.759 42 H 0.045 0.955 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.950 -11.281 -6.649 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.321 6.321 4 C -0.028 4.028 5 C 0.298 3.702 6 O -0.459 6.459 7 N -0.329 5.329 8 C -0.007 4.007 9 C -0.165 4.165 10 C 0.055 3.945 11 H 0.034 0.966 12 C -0.122 4.122 13 H 0.121 0.879 14 C -0.168 4.168 15 C 0.060 3.940 16 N -0.334 5.334 17 C -0.346 4.346 18 H 0.113 0.887 19 C -0.263 4.263 20 N -0.604 5.604 21 Si 0.797 3.203 22 H -0.223 1.223 23 H -0.233 1.233 24 H -0.184 1.184 25 C 0.009 3.991 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.024 0.976 40 H 0.025 0.975 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.379 -10.715 -6.483 18.326 hybrid contribution 1.452 0.034 0.888 1.703 sum -11.927 -10.681 -5.595 16.960 Atomic orbital electron populations 1.21774 0.93161 1.03495 1.02397 1.22803 0.96281 0.81965 1.01806 1.87979 1.19473 1.28874 1.95767 1.22293 0.83450 0.92100 1.04930 1.20930 0.81654 0.92014 0.75622 1.90660 1.50117 1.53507 1.51582 1.47721 1.05376 1.07879 1.71926 1.21880 0.88270 0.91157 0.99358 1.21578 0.99671 0.96934 0.98300 1.20503 0.89538 0.93978 0.90510 0.96561 1.22698 0.95263 0.96127 0.98109 0.87866 1.22995 0.97265 0.96827 0.99762 1.20952 0.94232 0.84259 0.94559 1.44582 1.46018 1.05344 1.37489 1.19402 1.10339 0.90162 1.14745 0.88722 1.25575 1.01830 0.97650 1.01230 1.70197 1.39405 1.15807 1.34971 0.85204 0.79511 0.79114 0.76448 1.22263 1.23279 1.18374 1.21037 0.97793 0.82206 0.98071 0.92897 0.92633 0.88444 0.91291 0.91741 0.87105 0.88041 0.86585 0.92104 0.89486 0.90438 0.90755 0.90645 0.97639 0.97525 0.94946 0.93656 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -10.35 9.88 -129.94 -1.28 -11.64 16 4 C 0.05 1.13 4.77 71.23 0.34 1.47 16 5 C 0.51 16.13 7.77 87.66 0.68 16.81 16 6 O -0.58 -23.55 15.87 16.00 0.25 -23.30 16 7 N -0.60 -18.72 2.92 -822.91 -2.40 -21.12 16 8 C 0.12 3.18 6.27 86.27 0.54 3.72 16 9 C -0.13 -3.62 5.17 30.01 0.16 -3.46 16 10 C 0.16 5.88 2.85 44.73 0.13 6.00 16 11 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 12 C -0.10 -3.39 3.83 -9.33 -0.04 -3.42 16 13 H 0.10 2.98 8.14 -2.38 -0.02 2.96 16 14 C -0.13 -4.70 6.30 32.15 0.20 -4.50 16 15 C 0.19 8.89 4.67 86.71 0.41 9.30 16 16 N -0.61 -28.49 3.13 -674.35 -2.11 -30.60 16 17 C -0.22 -11.01 9.02 84.03 0.76 -10.25 16 18 H 0.10 4.39 6.66 -2.91 -0.02 4.37 16 19 C -0.07 -3.82 5.48 84.86 0.47 -3.35 16 20 N -0.95 -56.39 10.42 21.65 0.23 -56.17 16 21 Si 0.97 43.94 29.56 68.60 2.03 45.96 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 C 0.13 4.69 5.43 86.72 0.47 5.16 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.72 7.78 -2.39 -0.02 1.70 16 32 H 0.10 1.77 7.89 -2.38 -0.02 1.75 16 33 H 0.12 2.14 5.99 -2.39 -0.01 2.13 16 34 H 0.06 2.11 7.47 -2.39 -0.02 2.09 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.08 2.26 7.01 -2.39 -0.02 2.24 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 38 H 0.07 2.52 7.99 -2.39 -0.02 2.50 16 39 H 0.01 0.29 7.20 -2.39 -0.02 0.28 16 40 H 0.01 0.36 7.42 -2.38 -0.02 0.34 16 41 H 0.24 14.13 8.31 -92.70 -0.77 13.35 16 42 H 0.05 1.88 6.89 -2.39 -0.02 1.87 16 43 H 0.08 2.75 6.92 -2.39 -0.02 2.73 16 Total: -1.00 -71.50 332.44 3.03 -68.47 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.98 Total: 11.15 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.33 Total: 17.24 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -4.29 Total: -107.89 kcal Atomic # 8 Polarization: -33.91 SS G_CDS: -1.03 Total: -34.94 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.50 3.03 -68.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005674.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -71.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds