Wall clock time and date at job start Tue Mar 31 2020 06:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47056 * 2 1 4 4 C 1.42908 * 113.99763 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46817 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00161 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00066 * 180.02562 * 5 4 3 8 8 C 1.47144 * 121.00888 * 0.02562 * 7 5 4 9 9 C 1.53049 * 107.67214 * 237.42693 * 8 7 5 10 10 C 1.51148 * 111.10676 * 305.57082 * 9 8 7 11 11 H 1.08997 * 108.46095 * 174.64982 * 10 9 8 12 12 C 1.53992 * 113.16814 * 55.14421 * 10 9 8 13 13 H 1.08995 * 112.71993 * 75.20604 * 12 10 9 14 14 C 1.56016 * 100.38344 * 196.35152 * 12 10 9 15 15 C 1.54518 * 102.70299 * 36.66948 * 14 12 10 16 16 N 1.46464 * 113.21497 * 294.93839 * 10 9 8 17 17 C 1.36942 * 126.05874 * 330.45167 * 16 10 9 18 18 H 1.07994 * 119.99475 * 6.59792 * 17 16 10 19 19 C 1.38809 * 119.99937 * 186.58896 * 17 16 10 20 20 N 1.31617 * 120.00197 * 7.34283 * 19 17 16 21 21 Si 1.86801 * 119.99790 * 187.33382 * 19 17 16 22 22 H 1.48502 * 109.47077 * 265.02352 * 21 19 17 23 23 H 1.48496 * 109.46859 * 145.02481 * 21 19 17 24 24 H 1.48497 * 109.47235 * 25.02392 * 21 19 17 25 25 C 1.46518 * 121.01352 * 179.97438 * 7 5 4 26 26 H 1.09006 * 109.47491 * 299.99887 * 1 2 3 27 27 H 1.09006 * 109.47339 * 59.99542 * 1 2 3 28 28 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47053 * 240.00397 * 2 1 3 30 30 H 1.08997 * 109.47106 * 120.00550 * 2 1 3 31 31 H 1.09000 * 109.47122 * 60.00605 * 4 3 2 32 32 H 1.09000 * 109.47229 * 300.00155 * 4 3 2 33 33 H 1.08995 * 109.81844 * 117.88543 * 8 7 5 34 34 H 1.09002 * 109.87272 * 356.99708 * 8 7 5 35 35 H 1.09001 * 109.14929 * 185.15173 * 9 8 7 36 36 H 1.08999 * 109.10984 * 65.96599 * 9 8 7 37 37 H 1.09003 * 110.78117 * 155.14554 * 14 12 10 38 38 H 1.08998 * 110.78436 * 278.58083 * 14 12 10 39 39 H 1.09000 * 110.01274 * 218.06384 * 15 14 12 40 40 H 1.09003 * 109.80140 * 96.81408 * 15 14 12 41 41 H 0.97004 * 120.00257 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.34394 * 244.66265 * 25 7 5 43 43 H 1.09006 * 109.34758 * 4.35173 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9161 0.0012 6 8 2.9609 3.7729 0.0016 7 7 5.1209 3.2663 0.0013 8 6 6.1806 2.2454 0.0002 9 6 7.0601 2.4874 1.2292 10 6 7.5735 3.9087 1.2597 11 1 8.1122 4.0611 2.1949 12 6 6.4508 4.9602 1.1878 13 1 5.9079 5.0613 2.1275 14 6 7.2764 6.2275 0.8052 15 6 8.3512 5.6579 -0.1478 16 7 8.4782 4.2197 0.1506 17 6 9.3007 3.3329 -0.4916 18 1 9.2431 2.2793 -0.2618 19 6 10.2084 3.7884 -1.4379 20 7 10.3815 5.0810 -1.6151 21 14 11.1842 2.5666 -2.4599 22 1 12.5051 2.3322 -1.8231 23 1 11.3834 3.1121 -3.8266 24 1 10.4399 1.2843 -2.5424 25 6 5.5236 4.6751 0.0013 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8340 0.9765 -0.8892 32 1 3.8333 0.9767 0.8908 33 1 6.7793 2.3352 -0.9061 34 1 5.7372 1.2511 0.0532 35 1 7.9070 1.8017 1.2034 36 1 6.4750 2.2992 2.1293 37 1 6.6496 6.9573 0.2927 38 1 7.7412 6.6672 1.6876 39 1 9.3044 6.1580 0.0236 40 1 8.0376 5.7959 -1.1826 41 1 11.0161 5.3993 -2.2761 42 1 6.0461 4.9012 -0.9282 43 1 4.6369 5.3042 0.0792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699005675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:39 Heat of formation + Delta-G solvation = -51.779158 kcal Electronic energy + Delta-G solvation = -23485.698894 eV Core-core repulsion = 20145.786372 eV Total energy + Delta-G solvation = -3339.912522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.15994 -38.56547 -37.41293 -35.00117 -32.86078 -31.68738 -31.63017 -29.55748 -28.30213 -26.98292 -25.04094 -23.69227 -22.96205 -22.55197 -20.12007 -19.71168 -18.22454 -17.27221 -16.61640 -16.52377 -16.25292 -15.47623 -15.19971 -14.84106 -14.48350 -13.97864 -13.92663 -13.55910 -13.26753 -12.79555 -12.66063 -12.61905 -12.35376 -12.18920 -11.61078 -11.55330 -11.47353 -11.35109 -11.09064 -11.03919 -10.84502 -10.69120 -10.18340 -10.08294 -9.95791 -9.82102 -9.65424 -9.62953 -9.41355 -8.64777 -8.21332 -6.84241 -5.75260 -3.09672 2.81289 2.89431 3.35405 3.40235 3.43236 3.86857 4.44581 4.65448 4.83095 4.95315 5.06814 5.13405 5.14730 5.16066 5.23671 5.32815 5.45157 5.49428 5.52030 5.56639 5.70423 5.74320 5.85395 5.91840 6.00123 6.11465 6.22077 6.27978 6.32283 6.39817 6.51067 6.65524 6.74357 6.85032 6.89702 7.01454 7.45724 7.62801 7.72433 7.78194 8.21716 8.41615 9.15608 9.78951 10.47030 11.35826 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.004664 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.611582 B = 6002.547239 C = 6827.700900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.047 3.953 5 C 0.514 3.486 6 O -0.534 6.534 7 N -0.600 5.600 8 C 0.111 3.889 9 C -0.129 4.129 10 C 0.170 3.830 11 H 0.018 0.982 12 C -0.117 4.117 13 H 0.078 0.922 14 C -0.141 4.141 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.917 5.917 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.128 3.872 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.252 0.748 42 H 0.078 0.922 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.151 -8.315 4.533 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C -0.033 4.033 5 C 0.301 3.699 6 O -0.411 6.411 7 N -0.334 5.334 8 C -0.011 4.011 9 C -0.168 4.168 10 C 0.062 3.938 11 H 0.035 0.965 12 C -0.137 4.137 13 H 0.096 0.904 14 C -0.179 4.179 15 C 0.048 3.952 16 N -0.319 5.319 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.564 5.564 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.006 3.994 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.566 -7.691 4.343 15.360 hybrid contribution 1.003 -0.915 -0.551 1.465 sum -11.563 -8.606 3.793 14.905 Atomic orbital electron populations 1.21724 0.93531 1.02080 1.03417 1.22530 0.95872 0.83644 1.00147 1.88015 1.18894 1.26080 1.95416 1.22237 0.83372 0.95343 1.02351 1.20099 0.82428 0.90288 0.77124 1.90682 1.49024 1.51752 1.49649 1.48020 1.04681 1.08413 1.72255 1.21825 0.88783 0.89410 1.01089 1.21593 0.99143 0.99462 0.96609 1.20220 0.89905 0.91304 0.92355 0.96494 1.22765 0.96007 0.97624 0.97306 0.90400 1.23113 0.98309 0.96079 1.00448 1.21285 0.95255 0.84016 0.94644 1.44308 1.45108 1.05604 1.36832 1.18942 1.11806 0.88818 1.15965 0.90364 1.24783 0.99109 0.95943 1.00439 1.69953 1.38201 1.11362 1.36841 0.86194 0.80092 0.80094 0.79908 1.21732 1.21748 1.20687 1.21561 0.98183 0.80418 0.99239 0.91740 0.91721 0.91092 0.93242 0.93275 0.90382 0.90427 0.89013 0.91240 0.90471 0.92670 0.91983 0.92213 0.92361 0.95078 0.93779 0.90371 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.15 0.38 -0.89 16 2 C 0.05 0.53 6.66 37.15 0.25 0.78 16 3 O -0.37 -5.18 9.88 -55.14 -0.54 -5.73 16 4 C 0.05 0.60 4.78 36.01 0.17 0.78 16 5 C 0.51 8.66 7.79 -10.99 -0.09 8.58 16 6 O -0.53 -11.02 15.93 -14.36 -0.23 -11.25 16 7 N -0.60 -9.94 2.93 -172.96 -0.51 -10.45 16 8 C 0.11 1.70 6.26 -3.66 -0.02 1.68 16 9 C -0.13 -2.08 5.16 -27.64 -0.14 -2.22 16 10 C 0.17 3.25 2.85 -68.37 -0.19 3.06 16 11 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 12 C -0.12 -2.03 3.86 -88.36 -0.34 -2.37 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.14 -2.56 6.28 -24.32 -0.15 -2.71 16 15 C 0.17 3.97 4.69 -2.74 -0.01 3.95 16 16 N -0.59 -13.78 3.12 -164.49 -0.51 -14.30 16 17 C -0.23 -5.75 9.03 -15.06 -0.14 -5.89 16 18 H 0.08 1.88 6.66 -52.49 -0.35 1.53 16 19 C -0.01 -0.16 5.45 -17.43 -0.10 -0.25 16 20 N -0.92 -25.89 10.54 55.49 0.58 -25.31 16 21 Si 0.91 21.07 29.56 -169.99 -5.02 16.04 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.13 2.28 5.45 -3.90 -0.02 2.26 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 32 H 0.08 0.82 7.78 -51.93 -0.40 0.42 16 33 H 0.09 1.64 7.48 -51.93 -0.39 1.25 16 34 H 0.07 0.82 6.00 -51.93 -0.31 0.51 16 35 H 0.08 1.27 7.02 -51.93 -0.36 0.91 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.03 7.97 -51.93 -0.41 0.61 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.52 7.07 -51.93 -0.37 1.15 16 40 H 0.03 0.78 7.53 -51.93 -0.39 0.39 16 41 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 42 H 0.08 1.55 6.82 -51.93 -0.35 1.19 16 43 H 0.08 1.44 7.00 -51.93 -0.36 1.08 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -31.22 332.62 -8.68 -39.90 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.06 Total: -0.67 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.40 Total: 6.75 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.44 Total: -50.06 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.77 Total: -16.98 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.22 -8.68 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.879 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds