Wall clock time and date at job start Tue Mar 31 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.47056 * 2 1 4 4 C 1.42908 * 113.99763 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.46817 * 180.02562 * 4 3 2 6 6 O 1.21286 * 120.00161 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00066 * 180.02562 * 5 4 3 8 8 C 1.47144 * 121.00888 * 0.02562 * 7 5 4 9 9 C 1.53049 * 107.67214 * 237.42693 * 8 7 5 10 10 C 1.51148 * 111.10676 * 305.57082 * 9 8 7 11 11 H 1.08997 * 108.46095 * 174.64982 * 10 9 8 12 12 C 1.53992 * 113.16814 * 55.14421 * 10 9 8 13 13 H 1.08995 * 112.71993 * 75.20604 * 12 10 9 14 14 C 1.56016 * 100.38344 * 196.35152 * 12 10 9 15 15 C 1.54518 * 102.70299 * 36.66948 * 14 12 10 16 16 N 1.46464 * 113.21497 * 294.93839 * 10 9 8 17 17 C 1.36942 * 126.05874 * 330.45167 * 16 10 9 18 18 H 1.07994 * 119.99475 * 6.59792 * 17 16 10 19 19 C 1.38809 * 119.99937 * 186.58896 * 17 16 10 20 20 N 1.31617 * 120.00197 * 7.34283 * 19 17 16 21 21 Si 1.86801 * 119.99790 * 187.33382 * 19 17 16 22 22 H 1.48502 * 109.47077 * 265.02352 * 21 19 17 23 23 H 1.48496 * 109.46859 * 145.02481 * 21 19 17 24 24 H 1.48497 * 109.47235 * 25.02392 * 21 19 17 25 25 C 1.46518 * 121.01352 * 179.97438 * 7 5 4 26 26 H 1.09006 * 109.47491 * 299.99887 * 1 2 3 27 27 H 1.09006 * 109.47339 * 59.99542 * 1 2 3 28 28 H 1.09000 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47053 * 240.00397 * 2 1 3 30 30 H 1.08997 * 109.47106 * 120.00550 * 2 1 3 31 31 H 1.09000 * 109.47122 * 60.00605 * 4 3 2 32 32 H 1.09000 * 109.47229 * 300.00155 * 4 3 2 33 33 H 1.08995 * 109.81844 * 117.88543 * 8 7 5 34 34 H 1.09002 * 109.87272 * 356.99708 * 8 7 5 35 35 H 1.09001 * 109.14929 * 185.15173 * 9 8 7 36 36 H 1.08999 * 109.10984 * 65.96599 * 9 8 7 37 37 H 1.09003 * 110.78117 * 155.14554 * 14 12 10 38 38 H 1.08998 * 110.78436 * 278.58083 * 14 12 10 39 39 H 1.09000 * 110.01274 * 218.06384 * 15 14 12 40 40 H 1.09003 * 109.80140 * 96.81408 * 15 14 12 41 41 H 0.97004 * 120.00257 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.34394 * 244.66265 * 25 7 5 43 43 H 1.09006 * 109.34758 * 4.35173 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9161 0.0012 6 8 2.9609 3.7729 0.0016 7 7 5.1209 3.2663 0.0013 8 6 6.1806 2.2454 0.0002 9 6 7.0601 2.4874 1.2292 10 6 7.5735 3.9087 1.2597 11 1 8.1122 4.0611 2.1949 12 6 6.4508 4.9602 1.1878 13 1 5.9079 5.0613 2.1275 14 6 7.2764 6.2275 0.8052 15 6 8.3512 5.6579 -0.1478 16 7 8.4782 4.2197 0.1506 17 6 9.3007 3.3329 -0.4916 18 1 9.2431 2.2793 -0.2618 19 6 10.2084 3.7884 -1.4379 20 7 10.3815 5.0810 -1.6151 21 14 11.1842 2.5666 -2.4599 22 1 12.5051 2.3322 -1.8231 23 1 11.3834 3.1121 -3.8266 24 1 10.4399 1.2843 -2.5424 25 6 5.5236 4.6751 0.0013 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.8340 0.9765 -0.8892 32 1 3.8333 0.9767 0.8908 33 1 6.7793 2.3352 -0.9061 34 1 5.7372 1.2511 0.0532 35 1 7.9070 1.8017 1.2034 36 1 6.4750 2.2992 2.1293 37 1 6.6496 6.9573 0.2927 38 1 7.7412 6.6672 1.6876 39 1 9.3044 6.1580 0.0236 40 1 8.0376 5.7959 -1.1826 41 1 11.0161 5.3993 -2.2761 42 1 6.0461 4.9012 -0.9282 43 1 4.6369 5.3042 0.0792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699005675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:38 Heat of formation + Delta-G solvation = -71.090691 kcal Electronic energy + Delta-G solvation = -23486.536305 eV Core-core repulsion = 20145.786372 eV Total energy + Delta-G solvation = -3340.749933 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52448 -39.90625 -38.49911 -36.49546 -34.62495 -33.17422 -32.45237 -31.17987 -29.72757 -28.30245 -26.71721 -25.23934 -23.99646 -23.63859 -21.84525 -21.08929 -19.69295 -18.49754 -18.18545 -17.62163 -17.37640 -16.87810 -16.66687 -16.16047 -15.97399 -15.67527 -15.25485 -14.69567 -14.58738 -14.15732 -13.96676 -13.87108 -13.59389 -13.24898 -13.22974 -13.00274 -12.80547 -12.64178 -12.55444 -12.30745 -12.20707 -12.13558 -11.98284 -11.68444 -11.53823 -11.42332 -11.18772 -10.74078 -10.64737 -10.62072 -9.61343 -8.77902 -7.76653 -5.11433 1.50053 1.50673 1.54941 1.59180 1.75247 2.54748 2.88702 3.41749 3.52250 3.63128 3.83910 3.93607 4.05788 4.11738 4.17950 4.24649 4.26770 4.30930 4.37953 4.45575 4.53392 4.57576 4.62336 4.75589 4.82368 4.82896 4.90641 4.97891 5.05468 5.13569 5.23928 5.27141 5.29153 5.39318 5.51978 5.58364 5.71057 5.81868 6.14187 6.26741 6.47099 7.13375 7.15621 7.86317 8.54024 9.34196 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021181 B = 0.004664 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.611582 B = 6002.547239 C = 6827.700900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.401 6.401 4 C 0.051 3.949 5 C 0.509 3.491 6 O -0.580 6.580 7 N -0.599 5.599 8 C 0.115 3.885 9 C -0.125 4.125 10 C 0.161 3.839 11 H 0.013 0.987 12 C -0.102 4.102 13 H 0.104 0.896 14 C -0.129 4.129 15 C 0.181 3.819 16 N -0.607 5.607 17 C -0.218 4.218 18 H 0.095 0.905 19 C -0.071 4.071 20 N -0.954 5.954 21 Si 0.967 3.033 22 H -0.293 1.293 23 H -0.305 1.305 24 H -0.260 1.260 25 C 0.133 3.867 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.019 0.981 40 H -0.004 1.004 41 H 0.241 0.759 42 H 0.049 0.951 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.493 -11.287 5.925 18.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.321 6.321 4 C -0.028 4.028 5 C 0.298 3.702 6 O -0.459 6.459 7 N -0.332 5.332 8 C -0.007 4.007 9 C -0.164 4.164 10 C 0.055 3.945 11 H 0.031 0.969 12 C -0.122 4.122 13 H 0.122 0.878 14 C -0.168 4.168 15 C 0.056 3.944 16 N -0.332 5.332 17 C -0.347 4.347 18 H 0.112 0.888 19 C -0.264 4.264 20 N -0.604 5.604 21 Si 0.797 3.203 22 H -0.220 1.220 23 H -0.232 1.232 24 H -0.185 1.185 25 C 0.010 3.990 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.115 0.885 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.014 0.986 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.924 -10.719 5.767 18.494 hybrid contribution 1.368 0.008 -0.945 1.663 sum -12.556 -10.710 4.822 17.193 Atomic orbital electron populations 1.21776 0.93165 1.03490 1.02398 1.22803 0.96278 0.81974 1.01797 1.87981 1.19486 1.28858 1.95767 1.22298 0.83436 0.92151 1.04912 1.20913 0.81644 0.91967 0.75636 1.90661 1.50136 1.53497 1.51651 1.48068 1.05274 1.07928 1.71940 1.21873 0.88292 0.91171 0.99341 1.21558 0.99624 0.96852 0.98346 1.20469 0.89632 0.94051 0.90376 0.96937 1.22717 0.95298 0.96133 0.98093 0.87836 1.22993 0.97172 0.96845 0.99781 1.20997 0.94844 0.84482 0.94066 1.44546 1.45525 1.05427 1.37716 1.19394 1.10627 0.89871 1.14765 0.88774 1.25570 1.01070 0.97322 1.02397 1.70183 1.39309 1.13222 1.37671 0.85214 0.78701 0.78894 0.77501 1.22027 1.23246 1.18458 1.21334 0.97667 0.81860 0.98109 0.92634 0.92892 0.88452 0.91736 0.91312 0.88024 0.87167 0.91974 0.86633 0.90514 0.89579 0.90512 0.90884 0.96287 0.98589 0.94936 0.93245 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.76 6.66 71.98 0.48 1.24 16 3 O -0.40 -10.31 9.88 -129.94 -1.28 -11.60 16 4 C 0.05 1.12 4.78 71.24 0.34 1.46 16 5 C 0.51 16.04 7.79 87.66 0.68 16.72 16 6 O -0.58 -23.46 15.93 15.99 0.25 -23.21 16 7 N -0.60 -18.60 2.93 -819.53 -2.40 -21.01 16 8 C 0.11 3.15 6.26 86.27 0.54 3.69 16 9 C -0.12 -3.59 5.16 30.01 0.15 -3.44 16 10 C 0.16 5.90 2.85 44.73 0.13 6.03 16 11 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 12 C -0.10 -3.39 3.86 -9.33 -0.04 -3.43 16 13 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 14 C -0.13 -4.66 6.28 32.16 0.20 -4.46 16 15 C 0.18 8.67 4.69 86.72 0.41 9.08 16 16 N -0.61 -28.38 3.12 -674.32 -2.10 -30.48 16 17 C -0.22 -11.01 9.03 84.03 0.76 -10.25 16 18 H 0.09 4.37 6.66 -2.91 -0.02 4.35 16 19 C -0.07 -3.86 5.45 84.86 0.46 -3.40 16 20 N -0.95 -56.38 10.54 21.65 0.23 -56.15 16 21 Si 0.97 43.85 29.56 68.60 2.03 45.87 16 22 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 23 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 24 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 25 C 0.13 4.66 5.45 86.46 0.47 5.13 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 1.75 7.89 -2.39 -0.02 1.73 16 32 H 0.11 1.71 7.78 -2.39 -0.02 1.69 16 33 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 34 H 0.12 2.11 6.00 -2.39 -0.01 2.10 16 35 H 0.08 2.25 7.02 -2.39 -0.02 2.23 16 36 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.08 2.53 7.97 -2.39 -0.02 2.52 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.02 1.05 7.07 -2.39 -0.02 1.03 16 40 H 0.00 -0.22 7.53 -2.39 -0.02 -0.24 16 41 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.05 2.01 6.82 -2.39 -0.02 1.99 16 43 H 0.08 2.72 7.00 -2.38 -0.02 2.71 16 Total: -1.00 -71.36 332.62 3.03 -68.33 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.98 Total: 11.34 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 5.33 Total: 16.90 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -4.28 Total: -107.64 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.03 Total: -34.80 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.36 3.03 -68.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.760 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds