Wall clock time and date at job start Tue Mar 31 2020 06:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.46919 * 2 1 4 4 C 1.42896 * 113.99777 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47117 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00093 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99906 * 179.97438 * 5 4 3 8 8 C 1.46595 * 119.68070 * 0.03212 * 7 5 4 9 9 C 1.53963 * 110.56760 * 227.79624 * 8 7 5 10 10 C 1.51811 * 107.28167 * 308.72968 * 9 8 7 11 11 H 1.09000 * 109.29403 * 306.56606 * 10 9 8 12 12 C 1.55676 * 107.48489 * 65.12393 * 10 9 8 13 13 H 1.08996 * 112.49115 * 50.67533 * 12 10 9 14 14 C 1.53743 * 100.09888 * 168.92795 * 12 10 9 15 15 C 1.55297 * 101.83998 * 320.73343 * 14 12 10 16 16 N 1.45459 * 117.16836 * 181.63679 * 10 9 8 17 17 C 1.36945 * 126.40667 * 31.14213 * 16 10 9 18 18 H 1.08000 * 119.99441 * 359.71550 * 17 16 10 19 19 C 1.38811 * 120.00031 * 179.71408 * 17 16 10 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47177 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46857 * 120.00139 * 21 19 17 24 24 H 1.48492 * 109.47220 * 239.99987 * 21 19 17 25 25 C 1.47715 * 119.68035 * 179.97438 * 7 5 4 26 26 H 1.09007 * 109.47159 * 60.00089 * 1 2 3 27 27 H 1.09000 * 109.46942 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47245 * 299.99629 * 1 2 3 29 29 H 1.09002 * 109.46926 * 240.00106 * 2 1 3 30 30 H 1.08993 * 109.47156 * 120.00410 * 2 1 3 31 31 H 1.09000 * 109.47405 * 60.00087 * 4 3 2 32 32 H 1.08999 * 109.47555 * 300.00208 * 4 3 2 33 33 H 1.08996 * 109.26046 * 348.07299 * 8 7 5 34 34 H 1.08996 * 109.26084 * 107.55583 * 8 7 5 35 35 H 1.09001 * 109.88133 * 68.40744 * 9 8 7 36 36 H 1.09005 * 109.87808 * 189.48325 * 9 8 7 37 37 H 1.09000 * 110.95222 * 202.60599 * 14 12 10 38 38 H 1.08992 * 110.99145 * 78.88390 * 14 12 10 39 39 H 1.09001 * 109.91882 * 263.13411 * 15 14 12 40 40 H 1.09004 * 110.08486 * 141.92142 * 15 14 12 41 41 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 42 42 H 1.09010 * 110.06869 * 8.75789 * 25 7 5 43 43 H 1.09004 * 110.15964 * 247.23125 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8194 2.9162 0.0012 6 8 2.9610 3.7729 0.0016 7 7 5.1210 3.2663 0.0023 8 6 6.1528 2.2250 0.0022 9 6 7.2206 2.5216 1.0710 10 6 7.6832 3.9522 0.8615 11 1 7.9949 4.0818 -0.1749 12 6 6.4708 4.8836 1.1553 13 1 5.9984 4.6635 2.1126 14 6 7.1792 6.2478 1.1822 15 6 8.5069 5.9032 1.9103 16 7 8.7289 4.4480 1.7427 17 6 9.7341 3.7089 2.3072 18 1 9.7985 2.6483 2.1137 19 6 10.6701 4.3229 3.1280 20 7 10.5913 5.6153 3.3642 21 14 12.0409 3.3146 3.8986 22 1 11.9074 1.8961 3.4798 23 1 13.3549 3.8412 3.4500 24 1 11.9503 3.4050 5.3780 25 6 5.4939 4.6956 0.0023 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.8340 0.9765 -0.8891 32 1 3.8333 0.9767 0.8908 33 1 5.6906 1.2608 0.2139 34 1 6.6270 2.1887 -0.9785 35 1 6.7903 2.4090 2.0661 36 1 8.0636 1.8409 0.9515 37 1 6.6008 6.9762 1.7504 38 1 7.3711 6.6081 0.1715 39 1 8.4235 6.1466 2.9695 40 1 9.3327 6.4585 1.4657 41 1 11.2451 6.0443 3.9381 42 1 4.6090 5.3131 0.1572 43 1 5.9728 4.9589 -0.9409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699005676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:41 Heat of formation + Delta-G solvation = -71.010039 kcal Electronic energy + Delta-G solvation = -23009.381862 eV Core-core repulsion = 19668.635426 eV Total energy + Delta-G solvation = -3340.746436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.51326 -39.87686 -38.52056 -36.80109 -34.56904 -33.02397 -32.49354 -31.46016 -30.02598 -28.21566 -26.64608 -24.71117 -23.79474 -23.60394 -21.88019 -21.30836 -20.19307 -18.70277 -18.14529 -17.50061 -17.39778 -16.89160 -16.60371 -16.18327 -15.95594 -15.62747 -15.19968 -14.84986 -14.62812 -14.29890 -13.93708 -13.78264 -13.64869 -13.34613 -13.21222 -13.10912 -13.07196 -12.72005 -12.47212 -12.30258 -12.14999 -12.07644 -11.95250 -11.77064 -11.60583 -11.51921 -10.99232 -10.74002 -10.70179 -10.63794 -9.72115 -8.86424 -7.82105 -5.16645 1.47391 1.47992 1.53014 1.57957 1.71580 2.51717 2.86412 3.37239 3.42288 3.60842 3.84408 3.89225 4.00247 4.12964 4.18126 4.22857 4.23724 4.31313 4.37592 4.40725 4.51511 4.53647 4.66211 4.71897 4.79205 4.82933 4.86140 4.93107 5.04727 5.05543 5.08443 5.22525 5.28867 5.45944 5.55487 5.55544 5.66792 5.77445 6.11821 6.21984 6.38950 7.10347 7.11730 7.81007 8.50028 9.30231 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027246 B = 0.003797 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.425921 B = 7372.718549 C = 8102.078447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.048 3.952 5 C 0.507 3.493 6 O -0.577 6.577 7 N -0.606 5.606 8 C 0.115 3.885 9 C -0.125 4.125 10 C 0.157 3.843 11 H 0.027 0.973 12 C -0.110 4.110 13 H 0.061 0.939 14 C -0.123 4.123 15 C 0.182 3.818 16 N -0.617 5.617 17 C -0.226 4.226 18 H 0.091 0.909 19 C -0.074 4.074 20 N -0.956 5.956 21 Si 0.975 3.025 22 H -0.259 1.259 23 H -0.297 1.297 24 H -0.298 1.298 25 C 0.135 3.865 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.015 0.985 40 H 0.004 0.996 41 H 0.244 0.756 42 H 0.081 0.919 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.105 -12.811 -9.371 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.323 6.323 4 C -0.031 4.031 5 C 0.296 3.704 6 O -0.456 6.456 7 N -0.340 5.340 8 C -0.007 4.007 9 C -0.164 4.164 10 C 0.050 3.950 11 H 0.045 0.955 12 C -0.130 4.130 13 H 0.079 0.921 14 C -0.161 4.161 15 C 0.057 3.943 16 N -0.341 5.341 17 C -0.355 4.355 18 H 0.109 0.891 19 C -0.266 4.266 20 N -0.606 5.606 21 Si 0.804 3.196 22 H -0.183 1.183 23 H -0.224 1.224 24 H -0.225 1.225 25 C 0.012 3.988 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.033 0.967 40 H 0.022 0.978 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.492 -12.222 -9.258 21.098 hybrid contribution 1.379 0.097 0.963 1.684 sum -13.114 -12.125 -8.295 19.692 Atomic orbital electron populations 1.21781 0.93319 1.03462 1.02366 1.22792 0.96187 0.81980 1.01819 1.87982 1.19671 1.28830 1.95775 1.22381 0.83424 0.92285 1.05056 1.20976 0.82004 0.91928 0.75489 1.90675 1.50298 1.53480 1.51178 1.48336 1.05461 1.07696 1.72494 1.21972 0.88352 0.90519 0.99840 1.21893 0.98513 0.96959 0.99046 1.21009 0.87070 0.93944 0.92959 0.95537 1.22527 0.95595 0.96863 0.98054 0.92095 1.22588 0.96054 0.96372 1.01131 1.21291 0.92458 0.83983 0.96557 1.44517 1.29394 1.04884 1.55298 1.19483 1.02311 0.92304 1.21379 0.89079 1.25652 1.02108 0.97044 1.01787 1.70181 1.37931 1.10054 1.42462 0.85050 0.78676 0.78588 0.77313 1.18327 1.22411 1.22529 1.21472 0.98084 0.81202 0.98001 0.92634 0.88511 0.92966 0.91210 0.91751 0.86894 0.87882 0.86599 0.89147 0.92697 0.90155 0.90738 0.90257 0.96681 0.97766 0.94702 0.90032 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 10.28 71.98 0.74 -1.34 16 2 C 0.05 0.70 6.66 71.98 0.48 1.18 16 3 O -0.40 -9.57 9.88 -129.94 -1.28 -10.86 16 4 C 0.05 0.90 4.75 71.24 0.34 1.24 16 5 C 0.51 14.13 7.75 87.66 0.68 14.81 16 6 O -0.58 -21.67 15.86 16.02 0.25 -21.42 16 7 N -0.61 -15.55 3.00 -817.92 -2.45 -18.00 16 8 C 0.12 2.32 6.21 86.69 0.54 2.86 16 9 C -0.13 -3.67 5.48 30.53 0.17 -3.51 16 10 C 0.16 5.87 2.59 45.72 0.12 5.99 16 11 H 0.03 1.00 7.94 -2.39 -0.02 0.98 16 12 C -0.11 -3.80 2.86 -9.85 -0.03 -3.82 16 13 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 14 C -0.12 -4.52 6.53 31.63 0.21 -4.31 16 15 C 0.18 9.02 5.45 86.85 0.47 9.49 16 16 N -0.62 -30.49 3.35 -668.76 -2.24 -32.73 16 17 C -0.23 -12.09 9.88 84.03 0.83 -11.26 16 18 H 0.09 4.53 7.21 -2.91 -0.02 4.51 16 19 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 20 N -0.96 -57.85 10.43 21.65 0.23 -57.62 16 21 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 23 H -0.30 -13.87 7.11 99.48 0.71 -13.17 16 24 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 25 C 0.13 3.88 5.96 85.91 0.51 4.39 16 26 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.35 7.99 -2.39 -0.02 1.33 16 32 H 0.10 1.47 7.55 -2.39 -0.02 1.45 16 33 H 0.12 1.48 5.83 -2.39 -0.01 1.47 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 1.76 8.13 -2.39 -0.02 1.75 16 36 H 0.08 2.33 7.62 -2.38 -0.02 2.31 16 37 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 39 H 0.01 0.84 7.21 -2.39 -0.02 0.83 16 40 H 0.00 0.23 7.76 -2.38 -0.02 0.21 16 41 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.08 2.54 7.00 -2.38 -0.02 2.52 16 43 H 0.09 2.23 8.08 -2.38 -0.02 2.21 16 Total: -1.00 -75.21 337.16 3.03 -72.18 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.97 Total: 9.31 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 5.52 Total: 12.05 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -4.46 Total: -108.36 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -1.03 Total: -32.28 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.21 3.03 -72.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699005676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.174 kcal (2) G-P(sol) polarization free energy of solvation -75.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds