Wall clock time and date at job start Tue Mar 31 2020 05:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 H 1.09002 * 110.27291 * 359.02285 * 3 2 1 5 5 O 1.43646 * 110.30658 * 236.93126 * 3 2 1 6 6 C 1.43239 * 109.96585 * 216.65599 * 5 3 2 7 7 C 1.54380 * 107.59119 * 1.71096 * 6 5 3 8 8 C 1.54944 * 110.30860 * 121.11201 * 3 2 1 9 9 H 1.09000 * 111.12910 * 37.43766 * 8 3 2 10 10 C 1.50700 * 111.12479 * 273.27709 * 8 3 2 11 11 O 1.21284 * 119.99921 * 0.02562 * 10 8 3 12 12 N 1.34778 * 120.00150 * 180.02562 * 10 8 3 13 13 C 1.46500 * 120.00027 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.47220 * 325.00086 * 13 12 10 15 15 C 1.52999 * 109.46819 * 85.00587 * 13 12 10 16 16 C 1.52998 * 109.46945 * 204.99928 * 13 12 10 17 17 C 1.53004 * 109.47159 * 65.00342 * 16 13 12 18 18 N 1.46494 * 109.47188 * 179.97438 * 17 16 13 19 19 C 1.36935 * 120.00152 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00100 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00185 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99789 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00167 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47108 * 89.99970 * 23 21 19 25 25 H 1.48498 * 109.47365 * 210.00434 * 23 21 19 26 26 H 1.48511 * 109.47194 * 330.00295 * 23 21 19 27 27 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 28 28 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.09008 * 109.82907 * 121.22558 * 6 5 3 31 31 H 1.09005 * 109.83053 * 242.10467 * 6 5 3 32 32 H 1.09009 * 110.84639 * 139.54752 * 7 6 5 33 33 H 1.09001 * 110.84961 * 262.96160 * 7 6 5 34 34 H 0.97004 * 119.99674 * 0.02562 * 12 10 8 35 35 H 1.09004 * 109.46678 * 299.99330 * 15 13 12 36 36 H 1.08995 * 109.47634 * 59.99752 * 15 13 12 37 37 H 1.08997 * 109.47188 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.47096 * 185.00485 * 16 13 12 39 39 H 1.09001 * 109.47234 * 305.00356 * 16 13 12 40 40 H 1.08997 * 109.47138 * 299.99761 * 17 16 13 41 41 H 1.09001 * 109.47035 * 59.99893 * 17 16 13 42 42 H 0.97008 * 120.00230 * 359.97438 * 18 17 16 43 43 H 0.97005 * 119.99776 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3670 2.1434 -0.0174 5 8 2.9494 1.3693 -1.1290 6 6 4.1637 2.0339 -0.7607 7 6 4.0647 2.3898 0.7383 8 6 2.9827 1.3954 1.2441 9 1 3.4209 0.4257 1.4801 10 6 2.2391 1.9554 2.4292 11 8 1.0715 2.2654 2.3213 12 7 2.8715 2.1117 3.6091 13 6 2.1487 2.6565 4.7611 14 1 1.4332 3.4048 4.4203 15 6 1.4043 1.5275 5.4766 16 6 3.1429 3.3042 5.7270 17 6 3.7973 4.5113 5.0520 18 7 4.7487 5.1318 5.9770 19 6 5.4595 6.2362 5.5895 20 1 5.3189 6.6496 4.6017 21 6 6.3614 6.8239 6.4659 22 7 7.0442 7.8857 6.0935 23 14 6.6052 6.1086 8.1742 24 1 7.6865 5.0916 8.1353 25 1 6.9796 7.1936 9.1164 26 1 5.3429 5.4719 8.6290 27 1 -0.5400 0.9353 -0.0045 28 1 -0.5400 -0.9353 0.0045 29 1 1.8500 -0.9353 0.0046 30 1 5.0131 1.3716 -0.9282 31 1 4.2815 2.9427 -1.3509 32 1 5.0162 2.2177 1.2415 33 1 3.7384 3.4213 0.8714 34 1 3.8054 1.8640 3.6954 35 1 0.6961 1.0660 4.7884 36 1 2.1199 0.7792 5.8174 37 1 0.8662 1.9329 6.3334 38 1 2.6174 3.6305 6.6246 39 1 3.9104 2.5794 5.9986 40 1 4.3228 4.1850 4.1545 41 1 3.0298 5.2361 4.7804 42 1 4.8753 4.7603 6.8642 43 1 7.6742 8.2966 6.7061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699132533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:36 Heat of formation + Delta-G solvation = -58.126732 kcal Electronic energy + Delta-G solvation = -22480.564803 eV Core-core repulsion = 19140.377030 eV Total energy + Delta-G solvation = -3340.187774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.64438 -38.90417 -36.64175 -34.57693 -34.00508 -32.90533 -31.74207 -30.70255 -28.72382 -28.31488 -24.43690 -23.60059 -22.51584 -21.46772 -20.89330 -20.36910 -20.12988 -17.89329 -17.47190 -16.60856 -16.32647 -15.80770 -15.28052 -14.70940 -14.56435 -14.23065 -14.06767 -13.82684 -13.73742 -13.47935 -13.37377 -12.68316 -12.66259 -12.59240 -12.10707 -12.05150 -11.75415 -11.57607 -11.34944 -11.24447 -11.13856 -10.94658 -10.78289 -10.56162 -10.18687 -9.92458 -9.82426 -9.63727 -9.51279 -9.11620 -8.92861 -7.28374 -5.80984 -3.17094 1.98943 2.52224 3.03396 3.33184 3.35479 3.41573 3.75433 4.17277 4.36139 4.51358 4.54766 4.72043 4.86176 4.87544 4.97084 5.04385 5.11241 5.15797 5.20624 5.45804 5.51657 5.54891 5.57574 5.59364 5.60528 5.74003 5.74744 5.82439 5.87947 5.90153 6.09570 6.17285 6.38430 6.43717 6.55343 6.64483 6.70124 6.78589 7.43942 7.94863 8.14354 8.37849 9.16714 9.88957 10.08520 11.37406 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.003705 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.287006 B = 7555.343181 C = 8526.791861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.160 4.160 3 C 0.129 3.871 4 H 0.090 0.910 5 O -0.376 6.376 6 C 0.052 3.948 7 C -0.146 4.146 8 C -0.140 4.140 9 H 0.111 0.889 10 C 0.529 3.471 11 O -0.536 6.536 12 N -0.717 5.717 13 C 0.145 3.855 14 H 0.090 0.910 15 C -0.161 4.161 16 C -0.139 4.139 17 C 0.159 3.841 18 N -0.757 5.757 19 C -0.246 4.246 20 H 0.089 0.911 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.886 3.114 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.402 0.598 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.360 0.640 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.458 -18.207 -9.084 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.072 3.928 4 H 0.107 0.893 5 O -0.295 6.295 6 C -0.024 4.024 7 C -0.184 4.184 8 C -0.162 4.162 9 H 0.129 0.871 10 C 0.314 3.686 11 O -0.413 6.413 12 N -0.368 5.368 13 C 0.041 3.959 14 H 0.108 0.892 15 C -0.219 4.219 16 C -0.178 4.178 17 C 0.031 3.969 18 N -0.403 5.403 19 C -0.376 4.376 20 H 0.107 0.893 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.193 0.807 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.262 -17.849 -9.492 22.671 hybrid contribution 0.944 -0.437 1.628 1.932 sum -9.318 -18.285 -7.863 21.978 Atomic orbital electron populations 1.23903 0.95780 1.02223 0.97640 1.22740 0.95899 0.97129 1.02071 1.21843 0.91110 0.96833 0.83043 0.89256 1.88465 1.27730 1.79412 1.33938 1.23127 0.87659 0.97394 0.94262 1.23167 0.99160 1.00059 0.96031 1.23019 0.97285 1.01200 0.94703 0.87058 1.20015 0.87123 0.77906 0.83520 1.90697 1.16358 1.50180 1.84083 1.46103 1.15095 1.65235 1.10377 1.20962 0.94227 0.95495 0.85256 0.89168 1.22158 1.00430 0.98729 1.00592 1.22122 0.98393 0.98567 0.98690 1.20604 0.91723 0.91759 0.92780 1.42719 1.48794 1.34513 1.14261 1.19054 1.15380 1.02642 1.00512 0.89303 1.24689 0.98916 0.97571 0.98003 1.69705 1.29604 1.22770 1.36080 0.86523 0.77758 0.78392 0.85679 1.21092 1.21689 1.20350 0.87987 0.88121 0.87093 0.90893 0.90799 0.88753 0.89468 0.76384 0.92290 0.92577 0.91547 0.90265 0.91409 0.95578 0.95633 0.80705 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 14.33 29.01 0.42 -1.13 16 2 C -0.16 -1.65 9.20 -36.03 -0.33 -1.99 16 3 C 0.13 1.47 2.94 -26.86 -0.08 1.39 16 4 H 0.09 1.16 7.06 -51.93 -0.37 0.79 16 5 O -0.38 -4.45 11.03 -35.23 -0.39 -4.84 16 6 C 0.05 0.49 7.80 37.88 0.30 0.78 16 7 C -0.15 -1.36 6.49 -24.73 -0.16 -1.52 16 8 C -0.14 -1.40 2.89 -89.46 -0.26 -1.66 16 9 H 0.11 0.91 8.05 -51.93 -0.42 0.49 16 10 C 0.53 6.46 7.13 -10.98 -0.08 6.39 16 11 O -0.54 -8.25 15.38 5.55 0.09 -8.17 16 12 N -0.72 -7.98 4.53 -53.81 -0.24 -8.23 16 13 C 0.15 1.77 2.57 -67.93 -0.17 1.59 16 14 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 15 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 16 C -0.14 -1.91 4.87 -26.73 -0.13 -2.04 16 17 C 0.16 2.91 6.15 -4.04 -0.02 2.89 16 18 N -0.76 -17.58 5.41 -59.91 -0.32 -17.91 16 19 C -0.25 -6.92 10.47 -15.06 -0.16 -7.08 16 20 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.18 13.97 55.49 0.78 -28.40 16 23 Si 0.89 21.76 27.73 -169.99 -4.71 17.04 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 27 H 0.10 1.05 7.86 -52.49 -0.41 0.64 16 28 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 29 H 0.11 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 34 H 0.40 3.79 8.60 -40.82 -0.35 3.44 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.48 7.75 -51.93 -0.40 0.07 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.36 8.09 5.53 -40.82 -0.23 7.87 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -33.37 354.83 -7.12 -40.49 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.23 Total: 8.35 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -0.43 Total: -3.69 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.21 Total: -54.54 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.30 Total: -13.01 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.37 -7.12 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699132533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.638 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds