Wall clock time and date at job start Tue Mar 31 2020 05:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 H 1.09002 * 110.27291 * 359.02285 * 3 2 1 5 5 O 1.43646 * 110.30658 * 236.93126 * 3 2 1 6 6 C 1.43239 * 109.96585 * 216.65599 * 5 3 2 7 7 C 1.54380 * 107.59119 * 1.71096 * 6 5 3 8 8 C 1.54944 * 110.30860 * 121.11201 * 3 2 1 9 9 H 1.09000 * 111.12910 * 37.43766 * 8 3 2 10 10 C 1.50700 * 111.12479 * 273.27709 * 8 3 2 11 11 O 1.21284 * 119.99921 * 0.02562 * 10 8 3 12 12 N 1.34778 * 120.00150 * 180.02562 * 10 8 3 13 13 C 1.46500 * 120.00027 * 179.97438 * 12 10 8 14 14 H 1.08995 * 109.47220 * 325.00086 * 13 12 10 15 15 C 1.52999 * 109.46819 * 85.00587 * 13 12 10 16 16 C 1.52998 * 109.46945 * 204.99928 * 13 12 10 17 17 C 1.53004 * 109.47159 * 65.00342 * 16 13 12 18 18 N 1.46494 * 109.47188 * 179.97438 * 17 16 13 19 19 C 1.36935 * 120.00152 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00100 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00185 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99789 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00167 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47108 * 89.99970 * 23 21 19 25 25 H 1.48498 * 109.47365 * 210.00434 * 23 21 19 26 26 H 1.48511 * 109.47194 * 330.00295 * 23 21 19 27 27 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 28 28 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.09008 * 109.82907 * 121.22558 * 6 5 3 31 31 H 1.09005 * 109.83053 * 242.10467 * 6 5 3 32 32 H 1.09009 * 110.84639 * 139.54752 * 7 6 5 33 33 H 1.09001 * 110.84961 * 262.96160 * 7 6 5 34 34 H 0.97004 * 119.99674 * 0.02562 * 12 10 8 35 35 H 1.09004 * 109.46678 * 299.99330 * 15 13 12 36 36 H 1.08995 * 109.47634 * 59.99752 * 15 13 12 37 37 H 1.08997 * 109.47188 * 180.02562 * 15 13 12 38 38 H 1.09005 * 109.47096 * 185.00485 * 16 13 12 39 39 H 1.09001 * 109.47234 * 305.00356 * 16 13 12 40 40 H 1.08997 * 109.47138 * 299.99761 * 17 16 13 41 41 H 1.09001 * 109.47035 * 59.99893 * 17 16 13 42 42 H 0.97008 * 120.00230 * 359.97438 * 18 17 16 43 43 H 0.97005 * 119.99776 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3670 2.1434 -0.0174 5 8 2.9494 1.3693 -1.1290 6 6 4.1637 2.0339 -0.7607 7 6 4.0647 2.3898 0.7383 8 6 2.9827 1.3954 1.2441 9 1 3.4209 0.4257 1.4801 10 6 2.2391 1.9554 2.4292 11 8 1.0715 2.2654 2.3213 12 7 2.8715 2.1117 3.6091 13 6 2.1487 2.6565 4.7611 14 1 1.4332 3.4048 4.4203 15 6 1.4043 1.5275 5.4766 16 6 3.1429 3.3042 5.7270 17 6 3.7973 4.5113 5.0520 18 7 4.7487 5.1318 5.9770 19 6 5.4595 6.2362 5.5895 20 1 5.3189 6.6496 4.6017 21 6 6.3614 6.8239 6.4659 22 7 7.0442 7.8857 6.0935 23 14 6.6052 6.1086 8.1742 24 1 7.6865 5.0916 8.1353 25 1 6.9796 7.1936 9.1164 26 1 5.3429 5.4719 8.6290 27 1 -0.5400 0.9353 -0.0045 28 1 -0.5400 -0.9353 0.0045 29 1 1.8500 -0.9353 0.0046 30 1 5.0131 1.3716 -0.9282 31 1 4.2815 2.9427 -1.3509 32 1 5.0162 2.2177 1.2415 33 1 3.7384 3.4213 0.8714 34 1 3.8054 1.8640 3.6954 35 1 0.6961 1.0660 4.7884 36 1 2.1199 0.7792 5.8174 37 1 0.8662 1.9329 6.3334 38 1 2.6174 3.6305 6.6246 39 1 3.9104 2.5794 5.9986 40 1 4.3228 4.1850 4.1545 41 1 3.0298 5.2361 4.7804 42 1 4.8753 4.7603 6.8642 43 1 7.6742 8.2966 6.7061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699132533.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:35 Heat of formation + Delta-G solvation = -81.930511 kcal Electronic energy + Delta-G solvation = -22481.597013 eV Core-core repulsion = 19140.377030 eV Total energy + Delta-G solvation = -3341.219983 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55968 -39.83411 -37.89660 -36.20368 -34.80466 -33.99119 -33.43972 -31.90270 -29.77477 -29.45821 -25.81652 -24.85052 -23.31672 -23.10304 -21.97310 -21.31306 -20.94884 -19.71334 -18.61140 -17.51479 -17.24707 -16.78242 -16.51547 -16.12251 -15.89434 -15.60726 -15.18653 -14.89683 -14.82661 -14.65114 -14.39094 -14.26216 -13.85248 -13.45509 -13.35588 -12.97367 -12.94852 -12.88053 -12.56065 -12.38200 -12.22248 -12.07693 -11.99749 -11.91407 -11.82326 -11.75217 -10.99377 -10.88516 -10.65294 -10.33034 -10.08933 -9.31636 -8.03706 -5.38425 1.21536 1.38738 1.43302 1.50878 1.56536 2.11617 2.48718 2.95039 3.27675 3.36793 3.44717 3.55493 3.72233 4.01571 4.04227 4.08305 4.12750 4.18701 4.26186 4.27559 4.41030 4.54448 4.61852 4.74911 4.75499 4.82348 4.83110 4.86364 4.99178 5.00859 5.04949 5.19666 5.24372 5.32611 5.55689 5.60781 5.73721 5.79879 5.97293 6.19880 6.53331 7.07092 7.21763 7.82010 8.02706 9.17893 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021679 B = 0.003705 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.287006 B = 7555.343181 C = 8526.791861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.169 4.169 3 C 0.126 3.874 4 H 0.061 0.939 5 O -0.392 6.392 6 C 0.048 3.952 7 C -0.143 4.143 8 C -0.131 4.131 9 H 0.139 0.861 10 C 0.527 3.473 11 O -0.573 6.573 12 N -0.709 5.709 13 C 0.150 3.850 14 H 0.066 0.934 15 C -0.152 4.152 16 C -0.123 4.123 17 C 0.155 3.845 18 N -0.757 5.757 19 C -0.240 4.240 20 H 0.050 0.950 21 C -0.066 4.066 22 N -0.985 5.985 23 Si 0.961 3.039 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.248 1.248 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.130 0.870 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.413 0.587 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.007 0.993 42 H 0.368 0.632 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.143 -21.145 -7.535 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.187 4.187 3 C 0.068 3.932 4 H 0.079 0.921 5 O -0.312 6.312 6 C -0.028 4.028 7 C -0.181 4.181 8 C -0.153 4.153 9 H 0.157 0.843 10 C 0.314 3.686 11 O -0.452 6.452 12 N -0.361 5.361 13 C 0.045 3.955 14 H 0.084 0.916 15 C -0.210 4.210 16 C -0.161 4.161 17 C 0.029 3.971 18 N -0.404 5.404 19 C -0.371 4.371 20 H 0.068 0.932 21 C -0.257 4.257 22 N -0.636 5.636 23 Si 0.788 3.212 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.172 1.172 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.148 0.852 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.085 0.915 34 H 0.250 0.750 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.048 0.952 41 H 0.025 0.975 42 H 0.202 0.798 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.964 -20.831 -7.949 24.422 hybrid contribution 0.802 0.554 1.010 1.403 sum -9.162 -20.277 -6.940 23.308 Atomic orbital electron populations 1.24048 0.95887 1.02644 0.97185 1.22882 0.96132 0.97228 1.02495 1.21777 0.91086 0.96609 0.83691 0.92063 1.88445 1.28594 1.79659 1.34537 1.23294 0.87492 0.97932 0.94130 1.23163 0.99822 0.98731 0.96368 1.22997 0.96806 1.02423 0.93036 0.84309 1.20391 0.86770 0.77315 0.84174 1.90686 1.18117 1.51789 1.84656 1.46045 1.15588 1.64597 1.09899 1.20833 0.93592 0.95762 0.85329 0.91583 1.22070 1.00394 0.98162 1.00383 1.21978 0.98839 0.96709 0.98614 1.20755 0.90541 0.93046 0.92730 1.42688 1.48956 1.33373 1.15344 1.19013 1.15416 1.03687 0.98988 0.93152 1.25600 0.98932 0.98173 1.02994 1.69904 1.30867 1.24873 1.37915 0.85321 0.79028 0.77537 0.79338 1.19919 1.22519 1.17220 0.89431 0.85893 0.85208 0.88653 0.90772 0.86588 0.91512 0.75044 0.93336 0.90818 0.90562 0.89518 0.89293 0.95248 0.97481 0.79798 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 14.33 67.78 0.97 -2.08 16 2 C -0.17 -3.33 9.20 25.64 0.24 -3.09 16 3 C 0.13 2.84 2.94 30.51 0.09 2.93 16 4 H 0.06 1.70 7.06 -2.39 -0.02 1.68 16 5 O -0.39 -9.07 11.03 -148.98 -1.64 -10.71 16 6 C 0.05 0.83 7.80 72.45 0.56 1.40 16 7 C -0.14 -2.49 6.49 31.89 0.21 -2.28 16 8 C -0.13 -2.44 2.89 -10.05 -0.03 -2.47 16 9 H 0.14 1.84 8.05 -2.39 -0.02 1.82 16 10 C 0.53 12.49 7.13 87.66 0.62 13.12 16 11 O -0.57 -17.92 15.38 -3.04 -0.05 -17.97 16 12 N -0.71 -14.54 4.53 -442.54 -2.00 -16.54 16 13 C 0.15 3.38 2.57 44.99 0.12 3.50 16 14 H 0.07 1.84 7.58 -2.39 -0.02 1.83 16 15 C -0.15 -2.79 9.48 71.98 0.68 -2.11 16 16 C -0.12 -3.02 4.87 30.59 0.15 -2.87 16 17 C 0.16 5.54 6.15 86.38 0.53 6.08 16 18 N -0.76 -34.05 5.41 -343.46 -1.86 -35.91 16 19 C -0.24 -13.61 10.47 84.03 0.88 -12.73 16 20 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 22 N -0.99 -62.88 13.97 21.65 0.30 -62.58 16 23 Si 0.96 44.05 27.73 68.60 1.90 45.95 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.25 -10.04 6.52 99.48 0.65 -9.39 16 27 H 0.09 1.89 7.86 -2.91 -0.02 1.87 16 28 H 0.12 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.07 1.43 8.03 -2.39 -0.02 1.41 16 34 H 0.41 6.61 8.60 -92.71 -0.80 5.82 16 35 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 39 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.03 1.04 7.75 -2.39 -0.02 1.02 16 41 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.37 15.36 5.53 -92.70 -0.51 14.85 16 43 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 Total: -1.00 -74.00 354.83 1.77 -72.24 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.38 Total: 29.50 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.49 Total: -3.99 kcal Atomic # 7 Polarization: -111.46 SS G_CDS: -3.56 Total: -115.02 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -1.69 Total: -28.68 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.90 Total: 45.95 kcal Total: -74.00 1.77 -72.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699132533.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.691 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds