Wall clock time and date at job start Tue Mar 31 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 H 1.09004 * 109.86848 * 359.02230 * 3 2 1 5 5 O 1.43742 * 109.87531 * 238.01506 * 3 2 1 6 6 C 1.44575 * 106.86846 * 214.17196 * 5 3 2 7 7 C 1.54994 * 103.58604 * 39.87685 * 6 5 3 8 8 C 1.54096 * 109.87919 * 120.02695 * 3 2 1 9 9 H 1.09004 * 110.48812 * 2.77438 * 8 3 2 10 10 C 1.50704 * 110.48827 * 240.26214 * 8 3 2 11 11 O 1.21280 * 120.00146 * 359.97438 * 10 8 3 12 12 N 1.34772 * 119.99847 * 180.02562 * 10 8 3 13 13 C 1.46506 * 120.00026 * 179.97438 * 12 10 8 14 14 H 1.09003 * 109.46643 * 35.00270 * 13 12 10 15 15 C 1.52995 * 109.47192 * 275.00290 * 13 12 10 16 16 C 1.53000 * 109.47169 * 155.00095 * 13 12 10 17 17 C 1.53004 * 109.46992 * 295.00348 * 16 13 12 18 18 N 1.46497 * 109.46910 * 180.02562 * 17 16 13 19 19 C 1.36940 * 119.99914 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00075 * 359.97438 * 19 18 17 21 21 C 1.38816 * 119.99911 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99835 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47025 * 59.99362 * 23 21 19 25 25 H 1.48501 * 109.47541 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46925 * 299.99585 * 23 21 19 27 27 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 28 28 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 29 29 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 30 30 H 1.09004 * 110.50481 * 281.38027 * 6 5 3 31 31 H 1.08999 * 110.77578 * 158.51011 * 6 5 3 32 32 H 1.09001 * 110.91194 * 204.85728 * 7 6 5 33 33 H 1.08999 * 110.90911 * 81.25414 * 7 6 5 34 34 H 0.96999 * 120.00220 * 0.02562 * 12 10 8 35 35 H 1.09003 * 109.47311 * 299.99572 * 15 13 12 36 36 H 1.09002 * 109.47334 * 59.99685 * 15 13 12 37 37 H 1.09001 * 109.47335 * 179.97438 * 15 13 12 38 38 H 1.08997 * 109.47173 * 54.99842 * 16 13 12 39 39 H 1.08998 * 109.46725 * 175.00454 * 16 13 12 40 40 H 1.09005 * 109.47084 * 299.99897 * 17 16 13 41 41 H 1.08992 * 109.47653 * 59.99831 * 17 16 13 42 42 H 0.97004 * 120.00217 * 359.97438 * 18 17 16 43 43 H 0.97008 * 119.99621 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3611 2.1385 -0.0175 5 8 2.9280 1.3703 -1.1466 6 6 4.1108 2.0951 -0.7395 7 6 4.3855 1.5690 0.6923 8 6 2.9535 1.3963 1.2546 9 1 2.8817 0.4801 1.8408 10 6 2.5652 2.5881 2.0914 11 8 1.6605 3.3119 1.7328 12 7 3.2239 2.8501 3.2376 13 6 2.8467 4.0090 4.0507 14 1 1.7685 4.1580 3.9926 15 6 3.5629 5.2550 3.5260 16 6 3.2500 3.7638 5.5061 17 6 2.4411 2.5935 6.0692 18 7 2.8268 2.3591 7.4629 19 6 2.2312 1.3549 8.1786 20 1 1.4769 0.7360 7.7157 21 6 2.5963 1.1332 9.4994 22 7 3.5153 1.8878 10.0637 23 14 1.7845 -0.2371 10.4754 24 1 2.0414 -1.5389 9.8087 25 1 2.3463 -0.2660 11.8497 26 1 0.3208 0.0039 10.5435 27 1 -0.5400 0.9353 -0.0045 28 1 -0.5400 -0.9353 0.0045 29 1 1.8500 -0.9353 0.0046 30 1 3.9150 3.1673 -0.7234 31 1 4.9488 1.8691 -1.3989 32 1 4.9465 2.3001 1.2745 33 1 4.9092 0.6136 0.6618 34 1 3.9482 2.2719 3.5238 35 1 4.6411 5.1059 3.5841 36 1 3.2756 5.4297 2.4892 37 1 3.2820 6.1173 4.1307 38 1 4.3129 3.5268 5.5536 39 1 3.0507 4.6596 6.0942 40 1 1.3781 2.8303 6.0217 41 1 2.6403 1.6977 5.4812 42 1 3.5040 2.9153 7.8789 43 1 3.7707 1.7326 10.9866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699132534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:37 Heat of formation + Delta-G solvation = -84.207832 kcal Electronic energy + Delta-G solvation = -22402.558548 eV Core-core repulsion = 19061.239813 eV Total energy + Delta-G solvation = -3341.318735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68348 -39.73704 -37.81154 -36.12057 -34.84472 -34.00157 -33.21429 -31.70583 -29.52127 -29.31486 -25.95064 -24.87220 -23.52271 -23.17463 -21.95098 -21.30452 -20.93946 -19.23949 -18.28176 -17.65954 -17.34839 -16.74973 -16.41455 -16.31333 -15.78174 -15.46424 -15.24417 -15.11065 -14.84795 -14.63343 -14.32507 -14.09350 -13.69409 -13.41644 -13.11801 -12.90675 -12.87114 -12.68235 -12.41014 -12.31016 -12.27961 -12.14434 -12.02336 -12.00977 -11.92986 -11.65208 -10.99341 -10.93598 -10.71874 -10.39899 -10.11929 -9.02043 -7.96947 -5.26064 1.18501 1.47145 1.49685 1.54680 1.56038 2.11005 2.54894 3.01967 3.36748 3.41614 3.58222 3.60933 3.73974 4.02559 4.04787 4.09509 4.15942 4.24574 4.32616 4.38898 4.47212 4.55439 4.64719 4.76061 4.77382 4.79321 4.83856 4.86078 4.97626 5.01971 5.02542 5.20777 5.26129 5.32545 5.47247 5.54114 5.58520 5.73842 5.85050 6.25585 6.51194 7.18701 7.32303 8.07305 8.31359 9.26125 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018331 B = 0.003579 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.076518 B = 7821.779342 C = 8700.523009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.170 4.170 3 C 0.111 3.889 4 H 0.070 0.930 5 O -0.385 6.385 6 C 0.038 3.962 7 C -0.135 4.135 8 C -0.138 4.138 9 H 0.128 0.872 10 C 0.522 3.478 11 O -0.578 6.578 12 N -0.708 5.708 13 C 0.151 3.849 14 H 0.066 0.934 15 C -0.152 4.152 16 C -0.118 4.118 17 C 0.154 3.846 18 N -0.746 5.746 19 C -0.251 4.251 20 H 0.071 0.929 21 C -0.071 4.071 22 N -0.967 5.967 23 Si 0.972 3.028 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.280 1.280 27 H 0.090 0.910 28 H 0.124 0.876 29 H 0.130 0.870 30 H 0.053 0.947 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.004 0.996 41 H 0.025 0.975 42 H 0.376 0.624 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 0.007 -21.556 21.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.054 3.946 4 H 0.087 0.913 5 O -0.305 6.305 6 C -0.038 4.038 7 C -0.172 4.172 8 C -0.159 4.159 9 H 0.146 0.854 10 C 0.309 3.691 11 O -0.458 6.458 12 N -0.359 5.359 13 C 0.046 3.954 14 H 0.084 0.916 15 C -0.210 4.210 16 C -0.156 4.156 17 C 0.027 3.973 18 N -0.389 5.389 19 C -0.383 4.383 20 H 0.089 0.911 21 C -0.263 4.263 22 N -0.617 5.617 23 Si 0.800 3.200 24 H -0.202 1.202 25 H -0.219 1.219 26 H -0.207 1.207 27 H 0.109 0.891 28 H 0.142 0.858 29 H 0.148 0.852 30 H 0.071 0.929 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.022 0.978 41 H 0.043 0.957 42 H 0.208 0.792 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.629 0.310 -21.973 22.132 hybrid contribution -0.091 -0.497 1.360 1.451 sum 2.539 -0.187 -20.613 20.770 Atomic orbital electron populations 1.24124 0.95892 1.02908 0.97663 1.22977 0.96165 0.97523 1.02104 1.21776 0.92085 0.96776 0.84003 0.91271 1.88934 1.31270 1.76765 1.33549 1.23801 0.88178 0.95795 0.95994 1.23202 0.93284 1.04780 0.95974 1.22691 0.98128 0.98025 0.97057 0.85379 1.20636 0.81137 0.85918 0.81407 1.90660 1.31958 1.51505 1.71720 1.46031 1.37564 1.29871 1.22443 1.20833 0.99649 0.85967 0.88953 0.91552 1.22072 1.01277 0.96661 1.01012 1.21894 1.00887 0.98824 0.94023 1.20762 0.95778 0.96102 0.84630 1.42552 1.47859 1.38934 1.09515 1.19564 1.16240 1.08393 0.94109 0.91111 1.25537 1.00380 1.02211 0.98194 1.69795 1.35494 1.43029 1.13417 0.85243 0.77897 0.79283 0.77533 1.20203 1.21889 1.20658 0.89123 0.85838 0.85192 0.92887 0.86173 0.88280 0.87026 0.75046 0.90818 0.93185 0.90704 0.90063 0.90237 0.97767 0.95749 0.79212 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 14.32 67.78 0.97 -2.32 16 2 C -0.17 -3.45 8.94 25.64 0.23 -3.22 16 3 C 0.11 2.56 3.40 30.22 0.10 2.66 16 4 H 0.07 1.98 6.10 -2.38 -0.01 1.96 16 5 O -0.39 -8.84 11.19 -148.98 -1.67 -10.51 16 6 C 0.04 0.62 7.72 72.66 0.56 1.18 16 7 C -0.13 -1.80 6.70 31.89 0.21 -1.58 16 8 C -0.14 -2.64 3.05 -10.55 -0.03 -2.68 16 9 H 0.13 2.14 7.69 -2.38 -0.02 2.12 16 10 C 0.52 12.99 7.03 87.66 0.62 13.60 16 11 O -0.58 -18.98 14.92 -3.03 -0.05 -19.03 16 12 N -0.71 -15.68 4.38 -442.53 -1.94 -17.62 16 13 C 0.15 3.77 2.57 44.99 0.12 3.88 16 14 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 15 C -0.15 -3.13 9.48 71.98 0.68 -2.45 16 16 C -0.12 -3.37 4.87 30.60 0.15 -3.22 16 17 C 0.15 5.95 6.15 86.38 0.53 6.48 16 18 N -0.75 -37.28 5.60 -343.45 -1.92 -39.21 16 19 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 20 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 21 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 22 N -0.97 -58.28 13.06 21.65 0.28 -58.00 16 23 Si 0.97 45.63 29.55 68.60 2.03 47.65 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 25 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 H 0.09 1.92 7.85 -2.91 -0.02 1.89 16 28 H 0.12 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 30 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.10 7.75 -2.39 -0.02 1.08 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.41 7.44 8.60 -92.71 -0.80 6.64 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 41 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 42 H 0.38 19.68 7.67 -92.71 -0.71 18.97 16 43 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 Total: -1.00 -70.66 356.27 1.67 -68.99 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.51 Total: 32.10 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.45 Total: -4.39 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -3.58 Total: -114.83 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.71 Total: -29.53 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.66 1.67 -68.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699132534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.215 kcal (2) G-P(sol) polarization free energy of solvation -70.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds