Wall clock time and date at job start Tue Mar 31 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46985 * 2 1 4 4 C 1.53005 * 109.47343 * 240.00042 * 2 1 3 5 5 C 1.53003 * 109.46841 * 174.99964 * 4 2 1 6 6 N 1.46503 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36941 * 119.99737 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99887 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99432 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00439 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99413 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47359 * 59.99627 * 11 9 7 13 13 H 1.48503 * 109.46852 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47354 * 299.99484 * 11 9 7 15 15 N 1.46503 * 109.47140 * 119.99818 * 2 1 3 16 16 C 1.34777 * 119.99702 * 275.00429 * 15 2 1 17 17 O 1.21276 * 120.00448 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99413 * 180.02562 * 16 15 2 19 19 H 1.08998 * 110.81120 * 61.86052 * 18 16 15 20 20 C 1.55001 * 110.74652 * 298.54076 * 18 16 15 21 21 C 1.55819 * 102.78905 * 241.67834 * 20 18 16 22 22 H 1.08996 * 115.39062 * 158.83573 * 21 20 18 23 23 C 1.55821 * 105.32994 * 287.31369 * 21 20 18 24 24 C 1.55002 * 102.95099 * 72.59484 * 23 21 20 25 25 C 1.55825 * 110.74290 * 185.17669 * 18 16 15 26 26 H 1.08995 * 115.39121 * 320.20523 * 25 18 16 27 27 O 1.46535 * 101.24527 * 85.90507 * 25 18 16 28 28 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47706 * 300.00031 * 1 2 3 30 30 H 1.09007 * 109.46974 * 60.00214 * 1 2 3 31 31 H 1.08995 * 109.46571 * 294.99526 * 4 2 1 32 32 H 1.09001 * 109.46899 * 54.99959 * 4 2 1 33 33 H 1.09001 * 109.47411 * 299.99864 * 5 4 2 34 34 H 1.09001 * 109.47378 * 60.00289 * 5 4 2 35 35 H 0.96997 * 120.00181 * 0.02562 * 6 5 4 36 36 H 0.97000 * 119.99952 * 180.02562 * 10 9 7 37 37 H 0.96998 * 120.00113 * 95.00446 * 15 2 1 38 38 H 1.09002 * 110.74595 * 123.36020 * 20 18 16 39 39 H 1.08995 * 110.74976 * 0.02562 * 20 18 16 40 40 H 1.09002 * 110.75099 * 191.01396 * 23 21 20 41 41 H 1.08999 * 110.74965 * 314.18127 * 23 21 20 42 42 H 1.09007 * 110.74571 * 118.42225 * 24 23 21 43 43 H 1.09004 * 110.75000 * 241.76514 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 7 4.0533 -1.3043 -2.5095 7 6 5.3954 -1.3403 -2.7793 8 1 6.0936 -0.8588 -2.1108 9 6 5.8580 -1.9947 -3.9127 10 7 5.0070 -2.5810 -4.7277 11 14 7.6888 -2.0443 -4.2804 12 1 8.4002 -2.7155 -3.1629 13 1 7.9207 -2.7987 -5.5384 14 1 8.2011 -0.6587 -4.4320 15 7 2.0183 -0.6906 1.1962 16 6 2.1469 -0.0182 2.3572 17 8 1.8589 1.1586 2.4115 18 6 2.6498 -0.7285 3.5875 19 1 3.6623 -1.1012 3.4328 20 6 1.6944 -1.8827 3.9842 21 6 1.2103 -1.4575 5.4030 22 1 0.2768 -1.9125 5.7341 23 6 2.4337 -1.6847 6.3409 24 6 3.3931 -0.5332 5.9454 25 6 2.5909 0.2105 4.8297 26 1 2.8771 1.2461 4.6467 27 8 1.2119 0.0027 5.2798 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7517 -1.7715 -1.2055 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4371 -1.3573 34 1 3.9995 -1.0727 -0.4259 35 1 3.4260 -1.7358 -3.1105 36 1 5.3304 -3.0386 -5.5194 37 1 2.2490 -1.6317 1.1527 38 1 2.2309 -2.8305 4.0273 39 1 0.8549 -1.9443 3.2918 40 1 2.1393 -1.6000 7.3870 41 1 2.8936 -2.6539 6.1479 42 1 3.5768 0.1251 6.7946 43 1 4.3297 -0.9288 5.5525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699134347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:31 Heat of formation + Delta-G solvation = -70.869271 kcal Electronic energy + Delta-G solvation = -22585.350914 eV Core-core repulsion = 19244.610582 eV Total energy + Delta-G solvation = -3340.740332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29302 -39.19774 -36.44009 -34.34620 -32.83233 -31.99161 -31.19549 -30.10227 -29.86334 -27.86462 -24.24470 -23.58169 -22.10682 -21.52701 -20.91165 -20.52530 -19.90510 -17.64965 -17.05163 -16.80140 -16.15513 -15.55732 -15.33413 -14.73995 -14.38549 -14.29792 -13.82652 -13.56588 -13.43566 -13.27741 -12.86135 -12.82396 -12.47775 -12.11150 -11.91544 -11.80975 -11.71709 -11.36266 -11.27546 -11.20380 -11.02799 -10.81605 -10.75353 -10.63126 -10.56206 -10.17845 -10.08102 -9.71556 -9.60478 -8.97268 -8.85721 -6.94068 -5.78164 -3.07026 2.70826 3.17331 3.42847 3.47189 3.48345 3.61476 4.17668 4.26987 4.41276 4.56093 4.56399 4.76246 4.80801 4.88209 4.96829 5.01132 5.21447 5.22117 5.29109 5.37482 5.49123 5.54308 5.54623 5.68658 5.69446 5.73197 5.78083 5.79224 5.85335 5.95027 6.06452 6.24246 6.29439 6.32444 6.34471 6.59332 6.80502 6.86749 7.60357 7.67989 8.31789 8.40957 9.51861 10.09732 10.44466 11.44727 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.003429 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.242636 B = 8164.872248 C = 8933.280694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.088 0.912 4 C -0.134 4.134 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.719 5.719 16 C 0.526 3.474 17 O -0.539 6.539 18 C -0.144 4.144 19 H 0.111 0.889 20 C -0.140 4.140 21 C 0.059 3.941 22 H 0.130 0.870 23 C -0.149 4.149 24 C -0.150 4.150 25 C 0.089 3.911 26 H 0.138 0.862 27 O -0.365 6.365 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.018 0.982 34 H 0.018 0.982 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.400 0.600 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.419 0.142 21.018 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.216 1.216 14 H -0.212 1.212 15 N -0.370 5.370 16 C 0.311 3.689 17 O -0.415 6.415 18 C -0.165 4.165 19 H 0.129 0.871 20 C -0.178 4.178 21 C 0.001 3.999 22 H 0.148 0.852 23 C -0.187 4.187 24 C -0.188 4.188 25 C 0.031 3.969 26 H 0.156 0.844 27 O -0.284 6.284 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.634 1.187 21.082 22.812 hybrid contribution 1.157 -0.919 -0.646 1.613 sum -7.477 0.268 20.436 21.762 Atomic orbital electron populations 1.22154 0.95518 1.01904 1.02296 1.20969 0.93534 0.97681 0.83800 0.89440 1.22061 0.98015 1.00747 0.96444 1.20627 0.90403 0.95580 0.90690 1.42366 1.05365 1.64946 1.25159 1.19190 0.83857 1.28570 1.05581 0.91308 1.24742 0.97730 1.00875 0.97625 1.69647 1.32901 1.40606 1.15151 0.86261 0.85080 0.77521 0.77285 1.21276 1.21643 1.21229 1.46115 1.67138 1.14175 1.09573 1.20237 0.77375 0.87147 0.84106 1.90685 1.49933 1.15985 1.84927 1.23108 1.01523 0.97402 0.94486 0.87093 1.23286 0.99198 0.97547 0.97730 1.24678 0.98565 0.82387 0.94254 0.85217 1.23264 0.96095 0.99058 1.00277 1.23345 0.98692 0.97594 0.99134 1.24600 0.82201 0.99628 0.90432 0.84432 1.90138 1.29712 1.21074 1.87456 0.92628 0.92392 0.91592 0.91428 0.90284 0.96458 0.96448 0.78320 0.93446 0.76521 0.89515 0.90203 0.90827 0.90440 0.90465 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.48 37.15 0.35 -1.60 16 2 C 0.14 2.00 2.57 -67.93 -0.17 1.83 16 3 H 0.09 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.13 -2.08 4.87 -26.73 -0.13 -2.21 16 5 C 0.15 3.09 6.15 -4.04 -0.02 3.07 16 6 N -0.73 -18.64 5.60 -59.90 -0.34 -18.97 16 7 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 11 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 N -0.72 -9.05 4.44 -53.80 -0.24 -9.29 16 16 C 0.53 7.14 6.98 -10.98 -0.08 7.06 16 17 O -0.54 -9.32 15.54 5.56 0.09 -9.23 16 18 C -0.14 -1.46 2.89 -89.21 -0.26 -1.72 16 19 H 0.11 0.96 7.80 -51.93 -0.41 0.56 16 20 C -0.14 -1.15 6.11 -24.17 -0.15 -1.30 16 21 C 0.06 0.50 5.71 -23.72 -0.14 0.36 16 22 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 23 C -0.15 -1.04 6.51 -24.17 -0.16 -1.20 16 24 C -0.15 -1.17 6.55 -23.93 -0.16 -1.33 16 25 C 0.09 0.96 4.65 -23.48 -0.11 0.85 16 26 H 0.14 1.59 7.71 -51.93 -0.40 1.19 16 27 O -0.37 -4.53 11.65 -35.23 -0.41 -4.94 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.02 0.35 7.75 -51.93 -0.40 -0.06 16 35 H 0.38 10.15 7.67 -40.82 -0.31 9.83 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 38 H 0.09 0.54 7.81 -51.93 -0.41 0.13 16 39 H 0.08 0.71 7.73 -51.93 -0.40 0.30 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.43 7.81 -51.93 -0.41 0.03 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.53 7.81 -51.93 -0.41 0.13 16 LS Contribution 346.82 15.07 5.23 5.23 Total: -1.00 -33.80 346.82 -8.47 -42.27 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -7.23 Total: 8.72 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -1.26 Total: -3.64 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: 0.15 Total: -55.79 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.32 Total: -14.17 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.80 -8.47 -42.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699134347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.603 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds