Wall clock time and date at job start Tue Mar 31 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46985 * 2 1 4 4 C 1.53005 * 109.47343 * 240.00042 * 2 1 3 5 5 C 1.53003 * 109.46841 * 174.99964 * 4 2 1 6 6 N 1.46503 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.36941 * 119.99737 * 179.97438 * 6 5 4 8 8 H 1.07995 * 119.99887 * 359.97438 * 7 6 5 9 9 C 1.38813 * 119.99432 * 180.02562 * 7 6 5 10 10 N 1.31616 * 120.00439 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99413 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47359 * 59.99627 * 11 9 7 13 13 H 1.48503 * 109.46852 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47354 * 299.99484 * 11 9 7 15 15 N 1.46503 * 109.47140 * 119.99818 * 2 1 3 16 16 C 1.34777 * 119.99702 * 275.00429 * 15 2 1 17 17 O 1.21276 * 120.00448 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99413 * 180.02562 * 16 15 2 19 19 H 1.08998 * 110.81120 * 61.86052 * 18 16 15 20 20 C 1.55001 * 110.74652 * 298.54076 * 18 16 15 21 21 C 1.55819 * 102.78905 * 241.67834 * 20 18 16 22 22 H 1.08996 * 115.39062 * 158.83573 * 21 20 18 23 23 C 1.55821 * 105.32994 * 287.31369 * 21 20 18 24 24 C 1.55002 * 102.95099 * 72.59484 * 23 21 20 25 25 C 1.55825 * 110.74290 * 185.17669 * 18 16 15 26 26 H 1.08995 * 115.39121 * 320.20523 * 25 18 16 27 27 O 1.46535 * 101.24527 * 85.90507 * 25 18 16 28 28 H 1.09000 * 109.46985 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47706 * 300.00031 * 1 2 3 30 30 H 1.09007 * 109.46974 * 60.00214 * 1 2 3 31 31 H 1.08995 * 109.46571 * 294.99526 * 4 2 1 32 32 H 1.09001 * 109.46899 * 54.99959 * 4 2 1 33 33 H 1.09001 * 109.47411 * 299.99864 * 5 4 2 34 34 H 1.09001 * 109.47378 * 60.00289 * 5 4 2 35 35 H 0.96997 * 120.00181 * 0.02562 * 6 5 4 36 36 H 0.97000 * 119.99952 * 180.02562 * 10 9 7 37 37 H 0.96998 * 120.00113 * 95.00446 * 15 2 1 38 38 H 1.09002 * 110.74595 * 123.36020 * 20 18 16 39 39 H 1.08995 * 110.74976 * 0.02562 * 20 18 16 40 40 H 1.09002 * 110.75099 * 191.01396 * 23 21 20 41 41 H 1.08999 * 110.74965 * 314.18127 * 23 21 20 42 42 H 1.09007 * 110.74571 * 118.42225 * 24 23 21 43 43 H 1.09004 * 110.75000 * 241.76514 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5649 -0.6132 -1.3136 6 7 4.0533 -1.3043 -2.5095 7 6 5.3954 -1.3403 -2.7793 8 1 6.0936 -0.8588 -2.1108 9 6 5.8580 -1.9947 -3.9127 10 7 5.0070 -2.5810 -4.7277 11 14 7.6888 -2.0443 -4.2804 12 1 8.4002 -2.7155 -3.1629 13 1 7.9207 -2.7987 -5.5384 14 1 8.2011 -0.6587 -4.4320 15 7 2.0183 -0.6906 1.1962 16 6 2.1469 -0.0182 2.3572 17 8 1.8589 1.1586 2.4115 18 6 2.6498 -0.7285 3.5875 19 1 3.6623 -1.1012 3.4328 20 6 1.6944 -1.8827 3.9842 21 6 1.2103 -1.4575 5.4030 22 1 0.2768 -1.9125 5.7341 23 6 2.4337 -1.6847 6.3409 24 6 3.3931 -0.5332 5.9454 25 6 2.5909 0.2105 4.8297 26 1 2.8771 1.2461 4.6467 27 8 1.2119 0.0027 5.2798 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.7517 -1.7715 -1.2055 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4371 -1.3573 34 1 3.9995 -1.0727 -0.4259 35 1 3.4260 -1.7358 -3.1105 36 1 5.3304 -3.0386 -5.5194 37 1 2.2490 -1.6317 1.1527 38 1 2.2309 -2.8305 4.0273 39 1 0.8549 -1.9443 3.2918 40 1 2.1393 -1.6000 7.3870 41 1 2.8936 -2.6539 6.1479 42 1 3.5768 0.1251 6.7946 43 1 4.3297 -0.9288 5.5525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699134347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:31 Heat of formation + Delta-G solvation = -94.786582 kcal Electronic energy + Delta-G solvation = -22586.388046 eV Core-core repulsion = 19244.610582 eV Total energy + Delta-G solvation = -3341.777464 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.09156 -40.24045 -37.81015 -36.09260 -33.90124 -33.28706 -32.45618 -31.09738 -30.57128 -29.41723 -25.93161 -24.65169 -23.25894 -22.69881 -21.85861 -21.53127 -20.80703 -19.22764 -18.40516 -17.70525 -17.17229 -16.71735 -16.33552 -16.19166 -15.58808 -15.36802 -15.23721 -15.09364 -14.89719 -14.35506 -14.24754 -13.64894 -13.53961 -13.12263 -12.92062 -12.87273 -12.75314 -12.56686 -12.46618 -12.34329 -12.30735 -12.05492 -12.01142 -11.94123 -11.86689 -11.65549 -11.45311 -10.95241 -10.93228 -10.65127 -10.07175 -9.02086 -7.96677 -5.26026 1.47211 1.50085 1.56413 1.65983 2.18936 2.55093 2.90127 3.36859 3.42687 3.55895 3.63262 3.73178 3.93644 4.00335 4.05926 4.13859 4.15389 4.27236 4.37718 4.42153 4.49982 4.54525 4.61641 4.64810 4.75437 4.83949 4.88837 4.97565 5.00551 5.02130 5.12467 5.15359 5.20866 5.24366 5.25140 5.31680 5.47272 5.58089 5.65621 6.25688 6.58169 7.28007 7.32271 8.07180 8.31458 9.26467 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.003429 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.242636 B = 8164.872248 C = 8933.280694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.065 0.935 4 C -0.117 4.117 5 C 0.155 3.845 6 N -0.746 5.746 7 C -0.251 4.251 8 H 0.072 0.928 9 C -0.072 4.072 10 N -0.968 5.968 11 Si 0.973 3.027 12 H -0.275 1.275 13 H -0.293 1.293 14 H -0.280 1.280 15 N -0.712 5.712 16 C 0.520 3.480 17 O -0.583 6.583 18 C -0.140 4.140 19 H 0.131 0.869 20 C -0.133 4.133 21 C 0.052 3.948 22 H 0.146 0.854 23 C -0.143 4.143 24 C -0.144 4.144 25 C 0.077 3.923 26 H 0.116 0.884 27 O -0.403 6.403 28 H 0.071 0.929 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.005 0.995 34 H 0.026 0.974 35 H 0.375 0.625 36 H 0.253 0.747 37 H 0.411 0.589 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.866 -1.416 22.207 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.083 0.917 4 C -0.155 4.155 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.383 4.383 8 H 0.090 0.910 9 C -0.264 4.264 10 N -0.618 5.618 11 Si 0.802 3.198 12 H -0.201 1.201 13 H -0.219 1.219 14 H -0.207 1.207 15 N -0.363 5.363 16 C 0.308 3.692 17 O -0.463 6.463 18 C -0.161 4.161 19 H 0.149 0.851 20 C -0.171 4.171 21 C -0.005 4.005 22 H 0.163 0.837 23 C -0.180 4.180 24 C -0.181 4.181 25 C 0.019 3.981 26 H 0.133 0.867 27 O -0.322 6.322 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.023 0.977 34 H 0.043 0.957 35 H 0.208 0.792 36 H 0.061 0.939 37 H 0.248 0.752 38 H 0.134 0.866 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.096 0.904 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.080 -0.380 22.306 23.727 hybrid contribution 0.942 -0.371 -0.984 1.412 sum -7.138 -0.752 21.322 22.498 Atomic orbital electron populations 1.22063 0.93873 1.02899 1.02146 1.20789 0.94688 0.96327 0.83600 0.91712 1.21882 0.94673 1.01727 0.97257 1.20748 0.93401 0.94085 0.88924 1.42558 1.04510 1.65275 1.26527 1.19576 0.85282 1.27887 1.05556 0.91025 1.25560 1.02073 1.01104 0.97713 1.69796 1.34734 1.41710 1.15566 0.85222 0.80017 0.77562 0.77019 1.20108 1.21924 1.20657 1.46064 1.66666 1.14593 1.09020 1.20908 0.76497 0.86747 0.85076 1.90664 1.51927 1.18062 1.85651 1.23159 1.02838 0.97729 0.92380 0.85112 1.23323 0.98703 0.97793 0.97303 1.24980 1.00142 0.80490 0.94888 0.83691 1.23267 0.95040 0.99554 1.00142 1.23332 0.99093 0.97671 0.98045 1.24631 0.82420 0.99142 0.91861 0.86657 1.90104 1.30680 1.23714 1.87746 0.91007 0.93623 0.90669 0.90177 0.90323 0.97744 0.95653 0.79245 0.93858 0.75240 0.86580 0.90923 0.90341 0.88247 0.90389 0.88719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.48 71.98 0.68 -2.85 16 2 C 0.15 4.09 2.57 44.99 0.12 4.20 16 3 H 0.06 2.08 7.58 -2.39 -0.02 2.06 16 4 C -0.12 -3.51 4.87 30.60 0.15 -3.36 16 5 C 0.15 6.11 6.15 86.38 0.53 6.64 16 6 N -0.75 -37.68 5.60 -343.44 -1.92 -39.61 16 7 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 9 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 10 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 11 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 15 N -0.71 -17.21 4.44 -442.53 -1.97 -19.17 16 16 C 0.52 14.00 6.98 87.66 0.61 14.62 16 17 O -0.58 -20.86 15.54 -3.02 -0.05 -20.91 16 18 C -0.14 -2.66 2.89 -9.88 -0.03 -2.69 16 19 H 0.13 1.94 7.80 -2.39 -0.02 1.93 16 20 C -0.13 -1.87 6.11 32.25 0.20 -1.67 16 21 C 0.05 0.78 5.71 32.54 0.19 0.96 16 22 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 23 C -0.14 -1.57 6.51 32.25 0.21 -1.36 16 24 C -0.14 -1.97 6.55 32.41 0.21 -1.76 16 25 C 0.08 1.64 4.65 32.70 0.15 1.79 16 26 H 0.12 2.85 7.71 -2.39 -0.02 2.83 16 27 O -0.40 -9.93 11.65 -148.98 -1.74 -11.66 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.03 0.97 7.75 -2.39 -0.02 0.96 16 35 H 0.38 19.90 7.67 -92.71 -0.71 19.18 16 36 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.41 8.16 8.60 -92.71 -0.80 7.36 16 38 H 0.12 0.96 7.81 -2.39 -0.02 0.94 16 39 H 0.07 1.14 7.73 -2.39 -0.02 1.12 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.10 0.69 7.81 -2.39 -0.02 0.67 16 42 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.09 1.00 7.81 -2.38 -0.02 0.98 16 Total: -1.00 -73.31 346.82 0.46 -72.85 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: -0.50 Total: 31.49 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 4.33 Total: -2.38 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -3.61 Total: -117.13 kcal Atomic # 8 Polarization: -30.79 SS G_CDS: -1.78 Total: -32.57 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.31 0.46 -72.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699134347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.937 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds