Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46657 * 2 1 4 4 C 1.52994 * 109.47158 * 120.00086 * 2 1 3 5 5 C 1.53001 * 109.46946 * 185.00047 * 4 2 1 6 6 N 1.46505 * 109.47129 * 179.97438 * 5 4 2 7 7 C 1.36940 * 120.00002 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99859 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99552 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99697 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00396 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47295 * 90.00123 * 11 9 7 13 13 H 1.48505 * 109.47039 * 210.00197 * 11 9 7 14 14 H 1.48498 * 109.47209 * 330.00339 * 11 9 7 15 15 N 1.46503 * 109.47046 * 240.00062 * 2 1 3 16 16 C 1.34777 * 119.99702 * 84.99994 * 15 2 1 17 17 O 1.21276 * 120.00448 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99413 * 180.02562 * 16 15 2 19 19 H 1.08990 * 110.67022 * 61.76233 * 18 16 15 20 20 C 1.55001 * 110.74652 * 298.54076 * 18 16 15 21 21 C 1.55819 * 102.78905 * 241.67834 * 20 18 16 22 22 H 1.08996 * 115.39062 * 158.83573 * 21 20 18 23 23 C 1.55821 * 105.32994 * 287.31369 * 21 20 18 24 24 C 1.55002 * 102.95099 * 72.59484 * 23 21 20 25 25 C 1.55825 * 110.74290 * 185.17669 * 18 16 15 26 26 H 1.08995 * 115.39121 * 320.20523 * 25 18 16 27 27 O 1.46535 * 101.24527 * 85.90507 * 25 18 16 28 28 H 1.09002 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47206 * 299.99480 * 1 2 3 30 30 H 1.08996 * 109.47476 * 60.00152 * 1 2 3 31 31 H 1.09004 * 109.47361 * 305.00007 * 4 2 1 32 32 H 1.08991 * 109.47613 * 65.00121 * 4 2 1 33 33 H 1.08995 * 109.47342 * 299.99639 * 5 4 2 34 34 H 1.09003 * 109.47049 * 60.00092 * 5 4 2 35 35 H 0.96999 * 119.99870 * 0.02562 * 6 5 4 36 36 H 0.96996 * 120.00053 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00113 * 265.00011 * 15 2 1 38 38 H 1.09002 * 110.74595 * 123.36020 * 20 18 16 39 39 H 1.08995 * 110.74976 * 0.02562 * 20 18 16 40 40 H 1.09002 * 110.75099 * 191.01396 * 23 21 20 41 41 H 1.08999 * 110.74965 * 314.18127 * 23 21 20 42 42 H 1.09007 * 110.74571 * 118.42225 * 24 23 21 43 43 H 1.09004 * 110.75000 * 241.76514 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0532 -1.3033 2.5101 7 6 5.3954 -1.3400 2.7795 8 1 6.0938 -0.8599 2.1102 9 6 5.8580 -1.9944 3.9129 10 7 7.1480 -2.0292 4.1722 11 14 4.6500 -2.8255 5.0702 12 1 4.4451 -4.2333 4.6443 13 1 5.1918 -2.8004 6.4527 14 1 3.3529 -2.1035 5.0337 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4117 18 6 2.6488 -0.7288 -3.5877 19 1 1.9726 -1.5361 -3.8685 20 6 4.0846 -1.2681 -3.3633 21 6 4.9119 -0.5057 -4.4414 22 1 5.9834 -0.4450 -4.2517 23 6 4.5097 -1.1509 -5.8016 24 6 3.0729 -0.6157 -6.0286 25 6 2.8372 0.2737 -4.7657 26 1 2.0647 1.0371 -4.8578 27 8 4.1916 0.7689 -4.5058 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1370 32 1 1.7518 -1.7714 1.2056 33 1 3.9995 -1.0727 0.4259 34 1 3.8532 0.4371 1.3573 35 1 3.4259 -1.7349 3.1110 36 1 7.4713 -2.4861 4.9644 37 1 2.2491 -1.6318 -1.1527 38 1 4.1243 -2.3437 -3.5354 39 1 4.4368 -1.0233 -2.3613 40 1 5.1757 -0.8193 -6.5982 41 1 4.5096 -2.2384 -5.7281 42 1 3.0229 -0.0175 -6.9385 43 1 2.3564 -1.4364 -6.0651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699134348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -66.421197 kcal Electronic energy + Delta-G solvation = -22794.125322 eV Core-core repulsion = 19453.577873 eV Total energy + Delta-G solvation = -3340.547449 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.25604 -39.22988 -36.55705 -34.49731 -32.80438 -31.99274 -31.34143 -30.19047 -29.82693 -28.27768 -24.27105 -23.48245 -22.01951 -21.37784 -20.94755 -20.58248 -19.92119 -17.76797 -17.38420 -16.73946 -16.32437 -15.59697 -15.14389 -14.75351 -14.38006 -14.27599 -14.04306 -13.78157 -13.40727 -13.33198 -12.79562 -12.63663 -12.60297 -12.08782 -12.02782 -11.85848 -11.70292 -11.53403 -11.34623 -11.24220 -11.18531 -10.92128 -10.75867 -10.69053 -10.51660 -10.15816 -10.10634 -9.64070 -9.60624 -9.02733 -8.89006 -7.24938 -5.78004 -3.13891 2.67067 3.13987 3.35299 3.37707 3.43483 3.66319 4.22523 4.31738 4.47267 4.57410 4.62233 4.71061 4.85396 4.87004 4.92728 5.02216 5.12709 5.22458 5.25959 5.28968 5.49260 5.56429 5.59124 5.61276 5.63202 5.73549 5.78283 5.79301 5.87550 5.88346 5.92388 5.96254 6.14772 6.22274 6.39283 6.52211 6.70086 6.75896 7.54950 7.98430 8.27675 8.40933 9.19927 9.92133 10.11946 11.40484 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.004004 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.175493 B = 6991.048409 C = 8028.438410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.090 0.910 4 C -0.139 4.139 5 C 0.159 3.841 6 N -0.757 5.757 7 C -0.245 4.245 8 H 0.089 0.911 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.886 3.114 12 H -0.284 1.284 13 H -0.291 1.291 14 H -0.277 1.277 15 N -0.720 5.720 16 C 0.526 3.474 17 O -0.537 6.537 18 C -0.142 4.142 19 H 0.107 0.893 20 C -0.142 4.142 21 C 0.060 3.940 22 H 0.133 0.867 23 C -0.150 4.150 24 C -0.149 4.149 25 C 0.088 3.912 26 H 0.136 0.864 27 O -0.363 6.363 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.360 0.640 36 H 0.259 0.741 37 H 0.400 0.600 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.656 -0.831 -19.713 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.108 0.892 4 C -0.177 4.177 5 C 0.031 3.969 6 N -0.403 5.403 7 C -0.375 4.375 8 H 0.107 0.893 9 C -0.192 4.192 10 N -0.582 5.582 11 Si 0.716 3.284 12 H -0.211 1.211 13 H -0.217 1.217 14 H -0.204 1.204 15 N -0.372 5.372 16 C 0.311 3.689 17 O -0.414 6.414 18 C -0.163 4.163 19 H 0.125 0.875 20 C -0.180 4.180 21 C 0.003 3.997 22 H 0.151 0.849 23 C -0.187 4.187 24 C -0.186 4.186 25 C 0.030 3.970 26 H 0.154 0.846 27 O -0.282 6.282 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.529 0.308 -19.727 23.372 hybrid contribution -0.687 -1.428 1.039 1.895 sum -13.216 -1.120 -18.689 22.917 Atomic orbital electron populations 1.22157 0.95485 1.01874 1.02335 1.20941 0.93510 0.97829 0.83712 0.89239 1.22111 0.98086 1.00739 0.96774 1.20607 0.90148 0.96012 0.90101 1.42726 1.05296 1.66309 1.25965 1.19067 0.82172 1.29341 1.06878 0.89288 1.24683 0.95606 1.00720 0.98182 1.69707 1.11731 1.48213 1.28580 0.86525 0.80944 0.79734 0.81173 1.21114 1.21703 1.20358 1.46105 1.67299 1.14119 1.09643 1.20281 0.77067 0.87163 0.84348 1.90687 1.49886 1.15777 1.85029 1.23094 0.98743 0.99632 0.94878 0.87468 1.23319 0.92669 1.00628 1.01395 1.24702 0.97923 0.83217 0.93889 0.84928 1.23272 0.96706 1.00725 0.98022 1.23333 0.97086 0.99599 0.98630 1.24576 0.86893 0.94133 0.91400 0.84602 1.90161 1.18982 1.26650 1.92397 0.92631 0.91606 0.92348 0.90336 0.91474 0.95582 0.95586 0.80730 0.93051 0.76525 0.89536 0.89593 0.90778 0.90460 0.90522 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.48 37.16 0.35 -1.42 16 2 C 0.14 1.88 2.57 -67.93 -0.17 1.71 16 3 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 4 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.16 3.03 6.15 -4.04 -0.02 3.01 16 6 N -0.76 -17.97 5.41 -59.91 -0.32 -18.30 16 7 C -0.24 -6.99 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 10 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 11 Si 0.89 22.00 27.74 -169.99 -4.71 17.28 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 15 N -0.72 -8.61 4.44 -53.81 -0.24 -8.85 16 16 C 0.53 6.93 6.98 -10.98 -0.08 6.86 16 17 O -0.54 -9.11 15.55 5.56 0.09 -9.02 16 18 C -0.14 -1.42 2.89 -89.21 -0.26 -1.67 16 19 H 0.11 0.78 7.81 -51.93 -0.41 0.38 16 20 C -0.14 -1.38 6.11 -24.17 -0.15 -1.53 16 21 C 0.06 0.61 5.71 -23.72 -0.14 0.48 16 22 H 0.13 1.21 8.14 -51.93 -0.42 0.79 16 23 C -0.15 -1.15 6.51 -24.17 -0.16 -1.31 16 24 C -0.15 -1.14 6.55 -23.93 -0.16 -1.30 16 25 C 0.09 0.94 4.65 -23.48 -0.11 0.84 16 26 H 0.14 1.51 7.71 -51.93 -0.40 1.11 16 27 O -0.36 -4.94 11.65 -35.23 -0.41 -5.35 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.36 8.25 5.53 -40.82 -0.23 8.02 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.40 4.07 8.60 -40.82 -0.35 3.72 16 38 H 0.09 0.64 7.81 -51.93 -0.41 0.24 16 39 H 0.09 1.02 7.73 -51.93 -0.40 0.61 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.48 7.81 -51.93 -0.41 0.07 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.46 7.81 -51.93 -0.41 0.05 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -34.83 343.71 -8.11 -42.94 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -7.19 Total: 8.41 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.27 Total: -3.60 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.21 Total: -55.84 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.32 Total: -14.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.83 -8.11 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699134348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.480 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds