Wall clock time and date at job start Tue Mar 31 2020 05:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46657 * 2 1 4 4 C 1.52994 * 109.47158 * 120.00086 * 2 1 3 5 5 C 1.53001 * 109.46946 * 185.00047 * 4 2 1 6 6 N 1.46505 * 109.47129 * 179.97438 * 5 4 2 7 7 C 1.36940 * 120.00002 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99859 * 0.02562 * 7 6 5 9 9 C 1.38810 * 119.99552 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99697 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00396 * 0.02562 * 9 7 6 12 12 H 1.48504 * 109.47295 * 90.00123 * 11 9 7 13 13 H 1.48505 * 109.47039 * 210.00197 * 11 9 7 14 14 H 1.48498 * 109.47209 * 330.00339 * 11 9 7 15 15 N 1.46503 * 109.47046 * 240.00062 * 2 1 3 16 16 C 1.34777 * 119.99702 * 84.99994 * 15 2 1 17 17 O 1.21276 * 120.00448 * 359.97438 * 16 15 2 18 18 C 1.50704 * 119.99413 * 180.02562 * 16 15 2 19 19 H 1.08990 * 110.67022 * 61.76233 * 18 16 15 20 20 C 1.55001 * 110.74652 * 298.54076 * 18 16 15 21 21 C 1.55819 * 102.78905 * 241.67834 * 20 18 16 22 22 H 1.08996 * 115.39062 * 158.83573 * 21 20 18 23 23 C 1.55821 * 105.32994 * 287.31369 * 21 20 18 24 24 C 1.55002 * 102.95099 * 72.59484 * 23 21 20 25 25 C 1.55825 * 110.74290 * 185.17669 * 18 16 15 26 26 H 1.08995 * 115.39121 * 320.20523 * 25 18 16 27 27 O 1.46535 * 101.24527 * 85.90507 * 25 18 16 28 28 H 1.09002 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47206 * 299.99480 * 1 2 3 30 30 H 1.08996 * 109.47476 * 60.00152 * 1 2 3 31 31 H 1.09004 * 109.47361 * 305.00007 * 4 2 1 32 32 H 1.08991 * 109.47613 * 65.00121 * 4 2 1 33 33 H 1.08995 * 109.47342 * 299.99639 * 5 4 2 34 34 H 1.09003 * 109.47049 * 60.00092 * 5 4 2 35 35 H 0.96999 * 119.99870 * 0.02562 * 6 5 4 36 36 H 0.96996 * 120.00053 * 179.97438 * 10 9 7 37 37 H 0.96998 * 120.00113 * 265.00011 * 15 2 1 38 38 H 1.09002 * 110.74595 * 123.36020 * 20 18 16 39 39 H 1.08995 * 110.74976 * 0.02562 * 20 18 16 40 40 H 1.09002 * 110.75099 * 191.01396 * 23 21 20 41 41 H 1.08999 * 110.74965 * 314.18127 * 23 21 20 42 42 H 1.09007 * 110.74571 * 118.42225 * 24 23 21 43 43 H 1.09004 * 110.75000 * 241.76514 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6132 1.3136 6 7 4.0532 -1.3033 2.5101 7 6 5.3954 -1.3400 2.7795 8 1 6.0938 -0.8599 2.1102 9 6 5.8580 -1.9944 3.9129 10 7 7.1480 -2.0292 4.1722 11 14 4.6500 -2.8255 5.0702 12 1 4.4451 -4.2333 4.6443 13 1 5.1918 -2.8004 6.4527 14 1 3.3529 -2.1035 5.0337 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8582 1.1584 -2.4117 18 6 2.6488 -0.7288 -3.5877 19 1 1.9726 -1.5361 -3.8685 20 6 4.0846 -1.2681 -3.3633 21 6 4.9119 -0.5057 -4.4414 22 1 5.9834 -0.4450 -4.2517 23 6 4.5097 -1.1509 -5.8016 24 6 3.0729 -0.6157 -6.0286 25 6 2.8372 0.2737 -4.7657 26 1 2.0647 1.0371 -4.8578 27 8 4.1916 0.7689 -4.5058 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -0.2618 2.1370 32 1 1.7518 -1.7714 1.2056 33 1 3.9995 -1.0727 0.4259 34 1 3.8532 0.4371 1.3573 35 1 3.4259 -1.7349 3.1110 36 1 7.4713 -2.4861 4.9644 37 1 2.2491 -1.6318 -1.1527 38 1 4.1243 -2.3437 -3.5354 39 1 4.4368 -1.0233 -2.3613 40 1 5.1757 -0.8193 -6.5982 41 1 4.5096 -2.2384 -5.7281 42 1 3.0229 -0.0175 -6.9385 43 1 2.3564 -1.4364 -6.0651 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699134348.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:33 Heat of formation + Delta-G solvation = -92.208242 kcal Electronic energy + Delta-G solvation = -22795.243532 eV Core-core repulsion = 19453.577873 eV Total energy + Delta-G solvation = -3341.665659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09734 -40.24922 -37.89876 -36.19023 -33.95665 -33.45333 -32.57833 -31.18621 -30.57953 -29.70568 -25.79200 -24.60475 -23.19110 -22.71397 -21.92301 -21.53059 -20.81967 -19.70891 -18.44313 -17.62212 -17.36463 -16.59629 -16.39380 -16.08013 -15.86757 -15.40013 -15.33139 -15.03874 -14.83151 -14.35459 -14.28712 -13.88445 -13.56683 -13.35099 -12.98299 -12.96288 -12.76513 -12.56665 -12.47337 -12.38271 -12.21633 -12.04510 -12.01024 -11.89343 -11.83120 -11.76279 -11.45386 -11.00039 -10.94417 -10.65757 -10.06847 -9.33178 -8.04395 -5.39594 1.38139 1.42990 1.50584 1.65099 2.19890 2.48152 2.89478 3.26669 3.40829 3.45115 3.56531 3.72131 3.93771 3.98597 4.00930 4.10715 4.12551 4.24364 4.27092 4.40417 4.49022 4.52857 4.60786 4.61148 4.72595 4.84407 4.88455 4.98324 5.00139 5.01453 5.10860 5.15749 5.18110 5.22372 5.24946 5.31289 5.58071 5.65957 5.72474 6.19030 6.58079 7.05915 7.28469 7.80083 8.02039 9.17299 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019290 B = 0.004004 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.175493 B = 6991.048409 C = 8028.438410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.148 3.852 3 H 0.059 0.941 4 C -0.122 4.122 5 C 0.156 3.844 6 N -0.756 5.756 7 C -0.243 4.243 8 H 0.048 0.952 9 C -0.064 4.064 10 N -0.985 5.985 11 Si 0.963 3.037 12 H -0.272 1.272 13 H -0.297 1.297 14 H -0.248 1.248 15 N -0.713 5.713 16 C 0.519 3.481 17 O -0.583 6.583 18 C -0.133 4.133 19 H 0.146 0.854 20 C -0.138 4.138 21 C 0.046 3.954 22 H 0.132 0.868 23 C -0.141 4.141 24 C -0.138 4.138 25 C 0.076 3.924 26 H 0.121 0.879 27 O -0.408 6.408 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.027 0.973 34 H 0.004 0.996 35 H 0.369 0.631 36 H 0.259 0.741 37 H 0.412 0.588 38 H 0.119 0.881 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.101 0.899 42 H 0.079 0.921 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.346 -3.364 -20.224 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.043 3.957 3 H 0.078 0.922 4 C -0.160 4.160 5 C 0.030 3.970 6 N -0.403 5.403 7 C -0.373 4.373 8 H 0.066 0.934 9 C -0.256 4.256 10 N -0.635 5.635 11 Si 0.789 3.211 12 H -0.198 1.198 13 H -0.224 1.224 14 H -0.173 1.173 15 N -0.365 5.365 16 C 0.306 3.694 17 O -0.463 6.463 18 C -0.154 4.154 19 H 0.163 0.837 20 C -0.176 4.176 21 C -0.011 4.011 22 H 0.149 0.851 23 C -0.178 4.178 24 C -0.176 4.176 25 C 0.018 3.982 26 H 0.139 0.861 27 O -0.328 6.328 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.022 0.978 35 H 0.203 0.797 36 H 0.068 0.932 37 H 0.248 0.752 38 H 0.137 0.863 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.256 -2.241 -20.268 25.467 hybrid contribution 0.253 -0.531 1.145 1.287 sum -15.003 -2.772 -19.123 24.463 Atomic orbital electron populations 1.22060 0.93261 1.03170 1.02358 1.20819 0.95091 0.96198 0.83610 0.92225 1.21968 0.93899 1.02445 0.97712 1.20729 0.93798 0.94072 0.88379 1.42669 1.03493 1.66667 1.27440 1.19007 0.83916 1.28300 1.06118 0.93377 1.25605 0.97694 1.01950 1.00310 1.69908 1.14406 1.49747 1.29455 0.85304 0.79184 0.79006 0.77628 1.19769 1.22370 1.17285 1.46064 1.66710 1.14584 1.09098 1.20933 0.76215 0.86780 0.85442 1.90667 1.51952 1.17854 1.85806 1.23147 0.99403 1.00031 0.92858 0.83673 1.23324 0.92176 1.02405 0.99669 1.24942 0.97888 0.82396 0.95843 0.85079 1.23254 0.96528 1.01876 0.96172 1.23318 0.97673 0.99715 0.96886 1.24710 0.85546 0.94507 0.93428 0.86119 1.90120 1.20760 1.29088 1.92855 0.90597 0.90595 0.93384 0.89498 0.89138 0.95524 0.97812 0.79728 0.93218 0.75154 0.86289 0.92480 0.90586 0.88026 0.90271 0.87805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.48 71.98 0.68 -2.29 16 2 C 0.15 3.68 2.57 44.99 0.12 3.80 16 3 H 0.06 1.86 7.58 -2.39 -0.02 1.84 16 4 C -0.12 -3.22 4.87 30.59 0.15 -3.07 16 5 C 0.16 5.93 6.15 86.38 0.53 6.46 16 6 N -0.76 -35.13 5.41 -343.44 -1.86 -36.99 16 7 C -0.24 -14.08 10.47 84.03 0.88 -13.20 16 8 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 9 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 10 N -0.99 -63.54 13.97 21.65 0.30 -63.24 16 11 Si 0.96 44.60 27.74 68.60 1.90 46.50 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 14 H -0.25 -10.23 6.52 99.48 0.65 -9.58 16 15 N -0.71 -16.18 4.44 -442.53 -1.97 -18.15 16 16 C 0.52 13.55 6.98 87.66 0.61 14.16 16 17 O -0.58 -20.47 15.55 -3.02 -0.05 -20.52 16 18 C -0.13 -2.45 2.89 -9.88 -0.03 -2.48 16 19 H 0.15 1.55 7.81 -2.39 -0.02 1.53 16 20 C -0.14 -2.50 6.11 32.25 0.20 -2.30 16 21 C 0.05 0.92 5.71 32.54 0.19 1.10 16 22 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 23 C -0.14 -1.82 6.51 32.25 0.21 -1.61 16 24 C -0.14 -1.79 6.55 32.41 0.21 -1.57 16 25 C 0.08 1.59 4.65 32.70 0.15 1.74 16 26 H 0.12 2.80 7.71 -2.39 -0.02 2.79 16 27 O -0.41 -11.48 11.65 -148.98 -1.74 -13.22 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 32 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.03 1.02 7.75 -2.39 -0.02 1.00 16 34 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.37 15.81 5.53 -92.71 -0.51 15.30 16 36 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 37 H 0.41 7.41 8.60 -92.71 -0.80 6.61 16 38 H 0.12 1.36 7.81 -2.39 -0.02 1.34 16 39 H 0.06 1.36 7.73 -2.39 -0.02 1.34 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.10 0.84 7.81 -2.39 -0.02 0.82 16 42 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.10 0.80 7.81 -2.38 -0.02 0.78 16 Total: -1.00 -79.24 343.71 0.60 -78.64 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.36 Total: 29.54 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 4.37 Total: -2.58 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -3.52 Total: -118.37 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.78 Total: -33.73 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.50 kcal Total: -79.24 0.60 -78.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699134348.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.566 kcal (2) G-P(sol) polarization free energy of solvation -79.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds