Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47347 * 2 1 4 4 C 1.52999 * 109.46653 * 240.00271 * 2 1 3 5 5 N 1.46500 * 109.47146 * 185.00061 * 4 2 1 6 6 C 1.46507 * 120.00377 * 270.00399 * 5 4 2 7 7 C 1.36939 * 120.00387 * 90.00108 * 5 4 2 8 8 H 1.08004 * 119.99416 * 341.12513 * 7 5 4 9 9 C 1.38810 * 120.00406 * 160.84930 * 7 5 4 10 10 N 1.31614 * 119.99909 * 344.45603 * 9 7 5 11 11 Si 1.86796 * 119.99907 * 164.45984 * 9 7 5 12 12 H 1.48499 * 109.47400 * 94.64219 * 11 9 7 13 13 H 1.48500 * 109.46921 * 214.64183 * 11 9 7 14 14 H 1.48503 * 109.47364 * 334.64038 * 11 9 7 15 15 N 1.46494 * 109.47315 * 120.00734 * 2 1 3 16 16 C 1.34782 * 120.00077 * 274.99980 * 15 2 1 17 17 O 1.21280 * 119.99370 * 359.97438 * 16 15 2 18 18 C 1.50697 * 120.00148 * 180.02562 * 16 15 2 19 19 H 1.08995 * 110.66802 * 59.29307 * 18 16 15 20 20 C 1.55002 * 110.74621 * 296.07562 * 18 16 15 21 21 C 1.55822 * 102.78809 * 241.67796 * 20 18 16 22 22 H 1.09000 * 115.38267 * 158.84083 * 21 20 18 23 23 C 1.55824 * 105.32743 * 287.31083 * 21 20 18 24 24 C 1.55001 * 102.78484 * 72.69098 * 23 21 20 25 25 C 1.55726 * 102.96259 * 359.93076 * 24 23 21 26 26 H 1.09003 * 115.48557 * 158.97988 * 25 24 23 27 27 O 1.46527 * 101.24632 * 32.42228 * 21 20 18 28 28 H 1.09004 * 109.47226 * 59.99194 * 1 2 3 29 29 H 1.08998 * 109.47858 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46609 * 299.99610 * 1 2 3 31 31 H 1.08999 * 109.47478 * 65.00319 * 4 2 1 32 32 H 1.08998 * 109.47411 * 304.99932 * 4 2 1 33 33 H 1.09003 * 109.46962 * 264.88119 * 6 5 4 34 34 H 1.08999 * 109.46644 * 24.87660 * 6 5 4 35 35 H 1.08989 * 109.47353 * 144.87656 * 6 5 4 36 36 H 0.97001 * 119.99752 * 180.02562 * 10 9 7 37 37 H 0.96998 * 120.00493 * 94.99364 * 15 2 1 38 38 H 1.08997 * 110.74788 * 0.02562 * 20 18 16 39 39 H 1.09009 * 110.74647 * 123.17262 * 20 18 16 40 40 H 1.08994 * 110.74929 * 191.01594 * 23 21 20 41 41 H 1.09004 * 110.74835 * 314.18340 * 23 21 20 42 42 H 1.09002 * 110.74778 * 118.32374 * 24 23 21 43 43 H 1.09004 * 110.75002 * 241.49217 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.3343 0.2340 -1.7614 7 6 4.0849 -1.9159 -0.6026 8 1 3.5149 -2.5352 0.0743 9 6 5.4086 -2.2278 -0.8808 10 7 6.0088 -1.6839 -1.9181 11 14 6.3379 -3.4196 0.2171 12 1 6.2576 -4.7868 -0.3568 13 1 7.7605 -3.0032 0.3070 14 1 5.7345 -3.4161 1.5740 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0185 2.3571 17 8 1.8590 1.1583 2.4115 18 6 2.6500 -0.7289 3.5873 19 1 3.6447 -1.1398 3.4147 20 6 1.6631 -1.8431 4.0200 21 6 1.2235 -1.3814 5.4418 22 1 0.2816 -1.7985 5.7982 23 6 2.4573 -1.6385 6.3582 24 6 3.4441 -0.5243 5.9255 25 6 2.6543 0.2300 4.8155 26 1 2.9871 1.2480 4.6125 27 8 1.2737 0.0759 5.2973 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7515 -0.1582 -2.1370 32 1 1.6052 -1.7197 -1.2953 33 1 4.6177 -0.0346 -2.7790 34 1 3.7743 1.1691 -1.7750 35 1 5.2314 0.3566 -1.1547 36 1 6.9337 -1.9021 -2.1127 37 1 2.2490 -1.6319 1.1524 38 1 0.8079 -1.8846 3.3455 39 1 2.1662 -2.8092 4.0630 40 1 2.1877 -1.5290 7.4086 41 1 2.8788 -2.6260 6.1702 42 1 3.6662 0.1404 6.7604 43 1 4.3607 -0.9553 5.5226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699460729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -49.104475 kcal Electronic energy + Delta-G solvation = -23783.168386 eV Core-core repulsion = 20443.371847 eV Total energy + Delta-G solvation = -3339.796539 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95754 -38.72576 -36.29528 -34.01761 -32.46247 -31.58041 -30.79136 -29.73295 -29.51287 -26.19971 -25.63776 -23.52903 -21.98818 -21.47826 -20.60949 -19.93938 -19.47699 -17.34973 -16.71010 -16.31125 -15.78576 -15.15176 -15.06311 -14.90402 -14.10531 -13.94061 -13.71158 -13.20838 -12.99699 -12.92875 -12.59430 -12.21792 -11.98634 -11.83121 -11.63129 -11.60838 -11.40366 -11.08722 -11.06864 -11.01084 -10.90956 -10.83496 -10.51041 -10.40796 -10.31127 -10.04322 -9.91876 -9.90018 -9.15989 -8.59181 -8.36979 -6.81892 -5.78058 -3.20537 3.19166 3.30463 3.35118 3.39001 3.62707 3.93846 4.42389 4.47330 4.56006 4.66726 4.84561 5.09160 5.10345 5.15441 5.28444 5.31200 5.45169 5.47846 5.59248 5.65998 5.73094 5.77736 5.84069 5.92624 5.95164 5.97087 6.06266 6.11967 6.15532 6.21994 6.47240 6.49460 6.57012 6.75567 6.83388 7.19192 7.38206 7.62596 7.75071 8.18890 8.31261 8.84389 9.16851 9.81702 10.30843 11.26906 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.006338 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.577675 B = 4417.008680 C = 5605.267240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.118 3.882 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.600 5.600 6 C 0.165 3.835 7 C -0.249 4.249 8 H 0.065 0.935 9 C 0.001 3.999 10 N -0.903 5.903 11 Si 0.899 3.101 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.280 1.280 15 N -0.695 5.695 16 C 0.525 3.475 17 O -0.553 6.553 18 C -0.142 4.142 19 H 0.109 0.891 20 C -0.138 4.138 21 C 0.059 3.941 22 H 0.128 0.872 23 C -0.148 4.148 24 C -0.151 4.151 25 C 0.092 3.908 26 H 0.137 0.863 27 O -0.367 6.367 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.029 0.971 34 H -0.003 1.003 35 H 0.042 0.958 36 H 0.252 0.748 37 H 0.402 0.598 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.896 -1.117 12.004 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.010 3.990 3 H 0.094 0.906 4 C 0.013 3.987 5 N -0.322 5.322 6 C 0.020 3.980 7 C -0.379 4.379 8 H 0.083 0.917 9 C -0.198 4.198 10 N -0.549 5.549 11 Si 0.729 3.271 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.206 1.206 15 N -0.345 5.345 16 C 0.311 3.689 17 O -0.432 6.432 18 C -0.164 4.164 19 H 0.127 0.873 20 C -0.176 4.176 21 C 0.001 3.999 22 H 0.146 0.854 23 C -0.186 4.186 24 C -0.189 4.189 25 C 0.034 3.966 26 H 0.154 0.846 27 O -0.285 6.285 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.238 0.762 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.073 -0.126 11.973 14.441 hybrid contribution 1.028 -1.340 0.389 1.733 sum -7.045 -1.466 12.362 14.304 Atomic orbital electron populations 1.22121 0.96640 1.01318 1.01637 1.21836 0.92138 0.98257 0.86750 0.90597 1.21052 0.86000 0.98209 0.93401 1.43857 0.98919 1.21129 1.68302 1.20774 0.92903 0.86203 0.98133 1.19009 0.95031 1.04408 1.19460 0.91686 1.24921 0.98500 0.99177 0.97159 1.70094 1.12163 1.46509 1.26087 0.86342 0.79693 0.80745 0.80323 1.21569 1.21625 1.20590 1.45907 1.65566 1.14290 1.08763 1.20104 0.77469 0.87054 0.84280 1.90633 1.51179 1.16103 1.85291 1.23061 1.01403 0.97277 0.94631 0.87262 1.23249 0.99107 0.97928 0.97273 1.24643 0.98454 0.82364 0.94428 0.85392 1.23252 0.96009 0.99226 1.00090 1.23256 0.98752 0.97798 0.99080 1.24528 0.82099 0.99451 0.90510 0.84559 1.90179 1.30505 1.21407 1.86448 0.92188 0.93000 0.92863 0.93049 0.93102 0.95316 0.98440 0.93893 0.93750 0.76242 0.90372 0.89753 0.90996 0.90526 0.90661 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.13 2.88 -67.94 -0.20 1.93 16 3 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 4 C 0.14 2.75 5.30 -4.04 -0.02 2.73 16 5 N -0.60 -14.31 2.82 -181.12 -0.51 -14.82 16 6 C 0.16 4.04 8.98 59.85 0.54 4.58 16 7 C -0.25 -6.31 8.81 -15.06 -0.13 -6.45 16 8 H 0.07 1.54 6.35 -52.48 -0.33 1.20 16 9 C 0.00 0.02 5.06 -17.43 -0.09 -0.06 16 10 N -0.90 -25.67 10.63 55.49 0.59 -25.08 16 11 Si 0.90 20.73 29.58 -169.99 -5.03 15.71 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 15 N -0.70 -12.42 4.47 -53.81 -0.24 -12.66 16 16 C 0.53 9.61 6.95 -10.98 -0.08 9.53 16 17 O -0.55 -11.89 15.57 5.56 0.09 -11.80 16 18 C -0.14 -2.10 2.88 -89.21 -0.26 -2.35 16 19 H 0.11 1.58 7.82 -51.93 -0.41 1.18 16 20 C -0.14 -1.66 6.13 -24.17 -0.15 -1.81 16 21 C 0.06 0.67 5.71 -23.72 -0.14 0.54 16 22 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 23 C -0.15 -1.45 6.52 -24.17 -0.16 -1.61 16 24 C -0.15 -1.67 6.50 -24.22 -0.16 -1.83 16 25 C 0.09 1.31 4.64 -23.77 -0.11 1.20 16 26 H 0.14 2.05 7.77 -51.93 -0.40 1.64 16 27 O -0.37 -5.62 11.66 -35.23 -0.41 -6.03 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 33 H 0.03 0.75 7.43 -51.93 -0.39 0.37 16 34 H 0.00 -0.07 8.03 -51.93 -0.42 -0.48 16 35 H 0.04 1.14 7.14 -51.93 -0.37 0.77 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.40 7.00 6.56 -40.82 -0.27 6.73 16 38 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 39 H 0.08 0.87 7.82 -51.92 -0.41 0.46 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.66 7.81 -51.93 -0.41 0.26 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.82 7.82 -51.93 -0.41 0.41 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -31.21 339.05 -8.10 -39.31 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.11 Total: 5.91 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -0.59 Total: 4.36 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.16 Total: -52.56 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.32 Total: -17.83 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.21 -8.10 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699460729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.795 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds