Wall clock time and date at job start Tue Mar 31 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47347 * 2 1 4 4 C 1.52999 * 109.46653 * 240.00271 * 2 1 3 5 5 N 1.46500 * 109.47146 * 185.00061 * 4 2 1 6 6 C 1.46507 * 120.00377 * 270.00399 * 5 4 2 7 7 C 1.36939 * 120.00387 * 90.00108 * 5 4 2 8 8 H 1.08004 * 119.99416 * 341.12513 * 7 5 4 9 9 C 1.38810 * 120.00406 * 160.84930 * 7 5 4 10 10 N 1.31614 * 119.99909 * 344.45603 * 9 7 5 11 11 Si 1.86796 * 119.99907 * 164.45984 * 9 7 5 12 12 H 1.48499 * 109.47400 * 94.64219 * 11 9 7 13 13 H 1.48500 * 109.46921 * 214.64183 * 11 9 7 14 14 H 1.48503 * 109.47364 * 334.64038 * 11 9 7 15 15 N 1.46494 * 109.47315 * 120.00734 * 2 1 3 16 16 C 1.34782 * 120.00077 * 274.99980 * 15 2 1 17 17 O 1.21280 * 119.99370 * 359.97438 * 16 15 2 18 18 C 1.50697 * 120.00148 * 180.02562 * 16 15 2 19 19 H 1.08995 * 110.66802 * 59.29307 * 18 16 15 20 20 C 1.55002 * 110.74621 * 296.07562 * 18 16 15 21 21 C 1.55822 * 102.78809 * 241.67796 * 20 18 16 22 22 H 1.09000 * 115.38267 * 158.84083 * 21 20 18 23 23 C 1.55824 * 105.32743 * 287.31083 * 21 20 18 24 24 C 1.55001 * 102.78484 * 72.69098 * 23 21 20 25 25 C 1.55726 * 102.96259 * 359.93076 * 24 23 21 26 26 H 1.09003 * 115.48557 * 158.97988 * 25 24 23 27 27 O 1.46527 * 101.24632 * 32.42228 * 21 20 18 28 28 H 1.09004 * 109.47226 * 59.99194 * 1 2 3 29 29 H 1.08998 * 109.47858 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46609 * 299.99610 * 1 2 3 31 31 H 1.08999 * 109.47478 * 65.00319 * 4 2 1 32 32 H 1.08998 * 109.47411 * 304.99932 * 4 2 1 33 33 H 1.09003 * 109.46962 * 264.88119 * 6 5 4 34 34 H 1.08999 * 109.46644 * 24.87660 * 6 5 4 35 35 H 1.08989 * 109.47353 * 144.87656 * 6 5 4 36 36 H 0.97001 * 119.99752 * 180.02562 * 10 9 7 37 37 H 0.96998 * 120.00493 * 94.99364 * 15 2 1 38 38 H 1.08997 * 110.74788 * 0.02562 * 20 18 16 39 39 H 1.09009 * 110.74647 * 123.17262 * 20 18 16 40 40 H 1.08994 * 110.74929 * 191.01594 * 23 21 20 41 41 H 1.09004 * 110.74835 * 314.18340 * 23 21 20 42 42 H 1.09002 * 110.74778 * 118.32374 * 24 23 21 43 43 H 1.09004 * 110.75002 * 241.49217 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0398 -0.7212 -1.2493 5 7 3.4999 -0.8264 -1.1907 6 6 4.3343 0.2340 -1.7614 7 6 4.0849 -1.9159 -0.6026 8 1 3.5149 -2.5352 0.0743 9 6 5.4086 -2.2278 -0.8808 10 7 6.0088 -1.6839 -1.9181 11 14 6.3379 -3.4196 0.2171 12 1 6.2576 -4.7868 -0.3568 13 1 7.7605 -3.0032 0.3070 14 1 5.7345 -3.4161 1.5740 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0185 2.3571 17 8 1.8590 1.1583 2.4115 18 6 2.6500 -0.7289 3.5873 19 1 3.6447 -1.1398 3.4147 20 6 1.6631 -1.8431 4.0200 21 6 1.2235 -1.3814 5.4418 22 1 0.2816 -1.7985 5.7982 23 6 2.4573 -1.6385 6.3582 24 6 3.4441 -0.5243 5.9255 25 6 2.6543 0.2300 4.8155 26 1 2.9871 1.2480 4.6125 27 8 1.2737 0.0759 5.2973 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.7515 -0.1582 -2.1370 32 1 1.6052 -1.7197 -1.2953 33 1 4.6177 -0.0346 -2.7790 34 1 3.7743 1.1691 -1.7750 35 1 5.2314 0.3566 -1.1547 36 1 6.9337 -1.9021 -2.1127 37 1 2.2490 -1.6319 1.1524 38 1 0.8079 -1.8846 3.3455 39 1 2.1662 -2.8092 4.0630 40 1 2.1877 -1.5290 7.4086 41 1 2.8788 -2.6260 6.1702 42 1 3.6662 0.1404 6.7604 43 1 4.3607 -0.9553 5.5226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699460729.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:39 Heat of formation + Delta-G solvation = -69.576758 kcal Electronic energy + Delta-G solvation = -23784.056131 eV Core-core repulsion = 20443.371847 eV Total energy + Delta-G solvation = -3340.684284 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.03080 -40.11572 -37.99013 -35.72408 -33.68381 -33.01197 -32.22139 -30.90000 -30.57313 -28.07906 -27.39054 -24.71729 -23.47783 -22.67570 -21.72680 -21.34727 -20.75443 -18.84498 -18.19892 -17.61026 -17.05548 -16.91295 -16.24469 -16.14575 -15.60833 -15.24153 -15.15209 -14.78979 -14.60583 -14.31408 -13.75979 -13.53907 -13.51804 -13.13027 -12.86785 -12.76622 -12.68475 -12.56778 -12.53586 -12.40203 -12.20248 -12.06564 -12.01746 -11.87699 -11.86074 -11.77389 -11.43302 -10.93129 -10.58586 -10.55942 -9.86213 -8.78277 -7.78229 -5.22568 1.48913 1.50505 1.58821 1.78146 2.36656 2.54200 2.89422 3.36103 3.46923 3.58972 3.70304 3.73441 3.93881 4.00758 4.13731 4.15572 4.27319 4.39428 4.43165 4.49961 4.53146 4.59438 4.74273 4.82772 4.86270 4.88832 4.97925 4.99156 5.00689 5.10921 5.14072 5.16943 5.23853 5.28966 5.42572 5.61119 5.63623 5.69149 5.76950 6.32650 6.75322 7.15772 7.42604 7.88889 8.35159 9.26458 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015538 B = 0.006338 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.577675 B = 4417.008680 C = 5605.267240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 H 0.046 0.954 4 C 0.143 3.857 5 N -0.614 5.614 6 C 0.180 3.820 7 C -0.243 4.243 8 H 0.085 0.915 9 C -0.062 4.062 10 N -0.943 5.943 11 Si 0.960 3.040 12 H -0.289 1.289 13 H -0.306 1.306 14 H -0.255 1.255 15 N -0.693 5.693 16 C 0.518 3.482 17 O -0.593 6.593 18 C -0.142 4.142 19 H 0.114 0.886 20 C -0.132 4.132 21 C 0.056 3.944 22 H 0.151 0.849 23 C -0.140 4.140 24 C -0.146 4.146 25 C 0.082 3.918 26 H 0.114 0.886 27 O -0.399 6.399 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.005 0.995 34 H 0.019 0.981 35 H 0.012 0.988 36 H 0.244 0.756 37 H 0.405 0.595 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.120 -3.158 13.787 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.064 0.936 4 C 0.016 3.984 5 N -0.337 5.337 6 C 0.035 3.965 7 C -0.373 4.373 8 H 0.103 0.897 9 C -0.256 4.256 10 N -0.591 5.591 11 Si 0.788 3.212 12 H -0.216 1.216 13 H -0.233 1.233 14 H -0.178 1.178 15 N -0.343 5.343 16 C 0.305 3.695 17 O -0.474 6.474 18 C -0.163 4.163 19 H 0.132 0.868 20 C -0.170 4.170 21 C -0.001 4.001 22 H 0.169 0.831 23 C -0.178 4.178 24 C -0.183 4.183 25 C 0.024 3.976 26 H 0.132 0.868 27 O -0.319 6.319 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.024 0.976 34 H 0.037 0.963 35 H 0.031 0.969 36 H 0.053 0.947 37 H 0.242 0.758 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.346 -2.191 13.776 16.791 hybrid contribution 1.320 -0.636 -0.210 1.481 sum -8.025 -2.827 13.566 16.013 Atomic orbital electron populations 1.21998 0.93942 1.02613 1.01908 1.21646 0.94107 0.96306 0.86291 0.93593 1.21217 0.83376 0.99316 0.94478 1.44098 1.00786 1.20594 1.68179 1.20469 0.92357 0.87514 0.96188 1.19484 0.95084 1.03994 1.18693 0.89698 1.25726 0.99769 1.01526 0.98560 1.70274 1.11859 1.48815 1.28144 0.85361 0.77537 0.78375 0.79890 1.21631 1.23306 1.17844 1.45928 1.65359 1.14349 1.08696 1.20790 0.76684 0.86731 0.85263 1.90610 1.52939 1.17932 1.85967 1.23105 1.02102 0.98106 0.92992 0.86797 1.23294 0.98296 0.97912 0.97504 1.24965 1.00383 0.80337 0.94432 0.83116 1.23259 0.94647 0.99509 1.00381 1.23241 0.98949 0.98089 0.98059 1.24523 0.82701 0.98814 0.91575 0.86798 1.90150 1.31020 1.24097 1.86597 0.90325 0.91122 0.94199 0.91786 0.91749 0.97646 0.96292 0.96907 0.94721 0.75795 0.90997 0.87165 0.89733 0.88538 0.89971 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.48 71.98 0.68 -3.42 16 2 C 0.12 4.34 2.88 44.99 0.13 4.47 16 3 H 0.05 1.90 7.58 -2.39 -0.02 1.88 16 4 C 0.14 5.30 5.30 86.38 0.46 5.75 16 5 N -0.61 -28.94 2.82 -726.93 -2.05 -30.99 16 6 C 0.18 8.99 8.98 127.77 1.15 10.14 16 7 C -0.24 -12.00 8.81 84.03 0.74 -11.26 16 8 H 0.09 3.79 6.35 -2.91 -0.02 3.77 16 9 C -0.06 -3.27 5.06 84.86 0.43 -2.84 16 10 N -0.94 -54.76 10.63 21.65 0.23 -54.53 16 11 Si 0.96 42.11 29.58 68.60 2.03 44.14 16 12 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.31 -14.10 7.11 99.48 0.71 -13.40 16 14 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 15 N -0.69 -23.96 4.47 -442.55 -1.98 -25.93 16 16 C 0.52 18.79 6.95 87.66 0.61 19.40 16 17 O -0.59 -26.05 15.57 -3.03 -0.05 -26.09 16 18 C -0.14 -3.98 2.88 -9.88 -0.03 -4.01 16 19 H 0.11 3.07 7.82 -2.39 -0.02 3.05 16 20 C -0.13 -2.81 6.13 32.25 0.20 -2.61 16 21 C 0.06 1.11 5.71 32.55 0.19 1.30 16 22 H 0.15 2.24 8.14 -2.39 -0.02 2.22 16 23 C -0.14 -2.24 6.52 32.26 0.21 -2.03 16 24 C -0.15 -2.89 6.50 32.22 0.21 -2.68 16 25 C 0.08 2.28 4.64 32.51 0.15 2.43 16 26 H 0.11 3.58 7.77 -2.39 -0.02 3.56 16 27 O -0.40 -11.84 11.66 -148.98 -1.74 -13.57 16 28 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.06 2.22 8.07 -2.39 -0.02 2.20 16 32 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 33 H 0.01 0.29 7.43 -2.39 -0.02 0.27 16 34 H 0.02 0.83 8.03 -2.39 -0.02 0.81 16 35 H 0.01 0.68 7.14 -2.39 -0.02 0.66 16 36 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 37 H 0.41 13.25 6.56 -92.71 -0.61 12.65 16 38 H 0.07 1.62 7.76 -2.39 -0.02 1.60 16 39 H 0.11 1.78 7.82 -2.38 -0.02 1.76 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.19 7.81 -2.39 -0.02 1.17 16 42 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.09 1.57 7.82 -2.38 -0.02 1.55 16 Total: -1.00 -68.87 339.05 1.95 -66.92 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.39 Total: 25.42 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: 5.12 Total: 14.64 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -3.80 Total: -111.45 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -1.78 Total: -39.66 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -68.87 1.95 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699460729.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.658 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds