Wall clock time and date at job start Tue Mar 31 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42894 * 109.47228 * 2 1 4 4 C 1.42904 * 114.00042 * 175.99301 * 3 2 1 5 5 C 1.53000 * 109.47007 * 182.27788 * 4 3 2 6 6 C 1.50694 * 115.55268 * 304.42221 * 5 4 3 7 7 O 1.21278 * 120.00633 * 245.72788 * 6 5 4 8 8 N 1.34784 * 119.99745 * 65.73294 * 6 5 4 9 9 C 1.46502 * 119.99899 * 185.21664 * 8 6 5 10 10 C 1.52997 * 109.47108 * 183.97994 * 9 8 6 11 11 N 1.46502 * 115.54971 * 80.44891 * 10 9 8 12 12 C 1.36937 * 119.99845 * 58.81649 * 11 10 9 13 13 H 1.07992 * 120.00252 * 355.37673 * 12 11 10 14 14 C 1.38810 * 119.99831 * 175.37634 * 12 11 10 15 15 N 1.31623 * 120.00489 * 5.55711 * 14 12 11 16 16 Si 1.86804 * 119.99995 * 185.56424 * 14 12 11 17 17 H 1.48508 * 109.47161 * 184.99223 * 16 14 12 18 18 H 1.48494 * 109.46919 * 304.98627 * 16 14 12 19 19 H 1.48496 * 109.47463 * 64.98883 * 16 14 12 20 20 C 1.52993 * 117.49841 * 226.11955 * 10 9 8 21 21 C 1.52998 * 117.49966 * 294.77849 * 10 9 8 22 22 C 1.53000 * 117.49601 * 90.09546 * 5 4 3 23 23 C 1.53000 * 117.49833 * 158.75003 * 5 4 3 24 24 H 1.09006 * 109.47045 * 62.35889 * 1 2 3 25 25 H 1.09001 * 109.47231 * 182.35220 * 1 2 3 26 26 H 1.08993 * 109.47331 * 302.35804 * 1 2 3 27 27 H 1.09000 * 109.47631 * 239.99679 * 2 1 3 28 28 H 1.09004 * 109.46723 * 119.99776 * 2 1 3 29 29 H 1.09001 * 109.47257 * 62.28082 * 4 3 2 30 30 H 1.09000 * 109.47308 * 302.27611 * 4 3 2 31 31 H 0.96997 * 120.00218 * 5.21421 * 8 6 5 32 32 H 1.08991 * 109.47125 * 63.97697 * 9 8 6 33 33 H 1.09009 * 109.46813 * 303.97834 * 9 8 6 34 34 H 0.96998 * 120.00252 * 238.81187 * 11 10 9 35 35 H 0.96993 * 120.00569 * 174.98188 * 15 14 12 36 36 H 1.09006 * 117.50194 * 214.99806 * 20 10 9 37 37 H 1.09004 * 117.49916 * 0.02562 * 20 10 9 38 38 H 1.08998 * 117.49520 * 359.97438 * 21 10 9 39 39 H 1.08998 * 117.49993 * 144.96870 * 21 10 9 40 40 H 1.09003 * 117.49847 * 215.00132 * 22 5 4 41 41 H 1.09001 * 117.50578 * 0.02562 * 22 5 4 42 42 H 1.09000 * 117.49783 * 359.97438 * 23 5 4 43 43 H 1.08997 * 117.49899 * 144.97354 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4279 1.4611 0.0912 5 6 3.8190 2.9395 0.1400 6 6 3.3140 3.7834 -1.0018 7 8 4.0981 4.2757 -1.7851 8 7 1.9908 3.9913 -1.1523 9 6 1.4917 4.7147 -2.3244 10 6 -0.0223 4.8990 -2.2034 11 7 -0.4578 6.0013 -1.3424 12 6 -0.0624 7.2830 -1.6183 13 1 0.6299 7.4727 -2.4251 14 6 -0.5516 8.3385 -0.8610 15 7 -1.3081 8.0999 0.1894 16 14 -0.1367 10.0977 -1.3328 17 1 -0.6739 11.0256 -0.3052 18 1 1.3378 10.2528 -1.4172 19 1 -0.7439 10.4132 -2.6506 20 6 -0.8726 4.5874 -3.4365 21 6 -0.8918 3.6405 -2.2340 22 6 3.9166 3.5993 1.5170 23 6 5.1890 3.2889 0.7248 24 1 -0.3633 0.4768 -0.9104 25 1 -0.3634 -1.0268 0.0422 26 1 -0.3633 0.5500 0.8680 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8866 0.9925 -0.7795 30 1 3.7749 0.9634 0.9968 31 1 1.3691 3.6619 -0.4847 32 1 1.7176 4.1455 -3.2260 33 1 1.9732 5.6911 -2.3809 34 1 -1.0263 5.8234 -0.5768 35 1 -1.5898 8.8315 0.7605 36 1 -1.7562 5.2025 -3.6072 37 1 -0.3534 4.2507 -4.3339 38 1 -0.3852 2.6813 -2.3408 39 1 -1.7876 3.6325 -1.6132 40 1 3.6155 4.6438 1.5970 41 1 3.7026 2.9801 2.3882 42 1 5.8114 2.4655 1.0751 43 1 5.7252 4.1289 0.2833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699655214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:35 Heat of formation + Delta-G solvation = -23.811429 kcal Electronic energy + Delta-G solvation = -23086.340421 eV Core-core repulsion = 19747.640670 eV Total energy + Delta-G solvation = -3338.699751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.93249 -38.10571 -37.46332 -36.12690 -33.53693 -32.94737 -31.43451 -29.66021 -27.50069 -26.40520 -23.85888 -22.93783 -22.68488 -22.40418 -21.66742 -19.44801 -18.73852 -17.25562 -17.02182 -16.50175 -16.08164 -15.70057 -15.26204 -15.02219 -14.46557 -14.16238 -13.84080 -13.55929 -13.41329 -13.21410 -12.99476 -12.62123 -12.10716 -11.96329 -11.85336 -11.64201 -11.53748 -11.33600 -10.93653 -10.90958 -10.84802 -10.60852 -10.36664 -10.25669 -10.19010 -9.76041 -9.65647 -9.45431 -9.24161 -8.78531 -8.40841 -7.00254 -5.78162 -3.08838 2.90788 3.27703 3.45458 3.49534 3.51099 3.59948 3.89139 4.49493 4.61615 4.64687 4.81970 4.85150 4.90801 5.03061 5.08006 5.21239 5.22295 5.32479 5.35983 5.48450 5.53284 5.55982 5.59042 5.71218 5.77859 5.80891 5.88140 5.91508 6.03695 6.09725 6.19570 6.33538 6.49180 6.64417 6.73650 6.83654 7.04289 7.04920 7.73556 8.10727 8.39107 8.72768 9.50162 10.04128 10.39426 11.42756 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.005259 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.881622 B = 5323.421451 C = 6193.464914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.380 6.380 4 C 0.110 3.890 5 C -0.160 4.160 6 C 0.550 3.450 7 O -0.554 6.554 8 N -0.692 5.692 9 C 0.148 3.852 10 C 0.134 3.866 11 N -0.687 5.687 12 C -0.237 4.237 13 H 0.072 0.928 14 C -0.009 4.009 15 N -0.933 5.933 16 Si 0.907 3.093 17 H -0.291 1.291 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.195 4.195 21 C -0.183 4.183 22 C -0.152 4.152 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.407 0.593 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.388 0.612 35 H 0.256 0.744 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 -17.853 1.855 19.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 O -0.300 6.300 4 C 0.033 3.967 5 C -0.164 4.164 6 C 0.334 3.666 7 O -0.433 6.433 8 N -0.341 5.341 9 C 0.023 3.977 10 C 0.039 3.961 11 N -0.326 5.326 12 C -0.368 4.368 13 H 0.090 0.910 14 C -0.205 4.205 15 N -0.580 5.580 16 Si 0.738 3.262 17 H -0.217 1.217 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.236 4.236 21 C -0.221 4.221 22 C -0.189 4.189 23 C -0.176 4.176 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.243 0.757 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.223 0.777 35 H 0.066 0.934 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.242 -17.136 1.202 18.643 hybrid contribution -0.200 0.523 0.348 0.659 sum 7.043 -16.613 1.550 18.111 Atomic orbital electron populations 1.21753 0.93453 1.02066 1.03726 1.22434 0.95847 0.83608 0.99713 1.87910 1.20601 1.26437 1.95030 1.21788 0.82052 0.92450 1.00417 1.21386 1.03638 0.95181 0.96170 1.19189 0.82625 0.80077 0.84667 1.90662 1.55980 1.51118 1.45541 1.45767 1.06723 1.55938 1.25658 1.21184 0.93408 0.96726 0.86400 1.20121 0.89063 0.90615 0.96266 1.41788 1.59233 1.01326 1.30249 1.19137 1.21087 0.82861 1.13687 0.91010 1.24739 0.99797 0.97897 0.98107 1.69636 1.40543 1.31344 1.16513 0.86263 0.77817 0.84628 0.77507 1.21726 1.21093 1.21248 1.23435 1.04156 1.03440 0.92583 1.23040 1.02341 0.93903 1.02830 1.23118 1.00748 1.02416 0.92607 1.22979 0.89452 1.03751 1.01371 0.91505 0.91357 0.91531 0.93610 0.93631 0.92660 0.92480 0.75735 0.92749 0.90424 0.77731 0.93390 0.88789 0.90095 0.89374 0.89177 0.87727 0.87856 0.88052 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.06 0.55 6.66 37.16 0.25 0.80 16 3 O -0.38 -4.56 8.89 -35.23 -0.31 -4.88 16 4 C 0.11 1.21 5.82 37.16 0.22 1.43 16 5 C -0.16 -2.16 2.23 -155.66 -0.35 -2.51 16 6 C 0.55 9.82 6.98 -10.98 -0.08 9.74 16 7 O -0.55 -11.78 16.69 5.56 0.09 -11.69 16 8 N -0.69 -12.37 5.18 -60.30 -0.31 -12.68 16 9 C 0.15 2.90 5.70 -4.04 -0.02 2.88 16 10 C 0.13 2.66 2.23 -131.82 -0.29 2.37 16 11 N -0.69 -16.93 5.52 -47.24 -0.26 -17.19 16 12 C -0.24 -6.54 9.46 -15.06 -0.14 -6.68 16 13 H 0.07 1.97 7.39 -52.49 -0.39 1.58 16 14 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 15 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 16 Si 0.91 22.64 29.56 -169.99 -5.03 17.62 16 17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 18 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 C -0.19 -3.49 10.11 -26.70 -0.27 -3.76 16 21 C -0.18 -3.03 10.07 -26.70 -0.27 -3.30 16 22 C -0.15 -1.82 9.93 -26.70 -0.27 -2.08 16 23 C -0.14 -1.58 9.78 -26.70 -0.26 -1.85 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.41 7.02 7.46 -40.82 -0.30 6.72 16 32 H 0.05 1.00 7.94 -51.93 -0.41 0.59 16 33 H 0.08 1.76 7.24 -51.92 -0.38 1.39 16 34 H 0.39 10.14 8.03 -40.82 -0.33 9.81 16 35 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 36 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 37 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 41 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.11 1.40 8.00 -51.93 -0.42 0.99 16 LS Contribution 363.23 15.07 5.47 5.47 Total: -1.00 -31.81 363.23 -8.09 -39.90 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.27 Total: 14.82 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.20 Total: -4.27 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.15 Total: -56.98 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.22 Total: -16.56 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.81 -8.09 -39.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699655214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.086 kcal (2) G-P(sol) polarization free energy of solvation -31.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds