Wall clock time and date at job start Tue Mar 31 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42894 * 109.47228 * 2 1 4 4 C 1.42904 * 114.00042 * 175.99301 * 3 2 1 5 5 C 1.53000 * 109.47007 * 182.27788 * 4 3 2 6 6 C 1.50694 * 115.55268 * 304.42221 * 5 4 3 7 7 O 1.21278 * 120.00633 * 245.72788 * 6 5 4 8 8 N 1.34784 * 119.99745 * 65.73294 * 6 5 4 9 9 C 1.46502 * 119.99899 * 185.21664 * 8 6 5 10 10 C 1.52997 * 109.47108 * 183.97994 * 9 8 6 11 11 N 1.46502 * 115.54971 * 80.44891 * 10 9 8 12 12 C 1.36937 * 119.99845 * 58.81649 * 11 10 9 13 13 H 1.07992 * 120.00252 * 355.37673 * 12 11 10 14 14 C 1.38810 * 119.99831 * 175.37634 * 12 11 10 15 15 N 1.31623 * 120.00489 * 5.55711 * 14 12 11 16 16 Si 1.86804 * 119.99995 * 185.56424 * 14 12 11 17 17 H 1.48508 * 109.47161 * 184.99223 * 16 14 12 18 18 H 1.48494 * 109.46919 * 304.98627 * 16 14 12 19 19 H 1.48496 * 109.47463 * 64.98883 * 16 14 12 20 20 C 1.52993 * 117.49841 * 226.11955 * 10 9 8 21 21 C 1.52998 * 117.49966 * 294.77849 * 10 9 8 22 22 C 1.53000 * 117.49601 * 90.09546 * 5 4 3 23 23 C 1.53000 * 117.49833 * 158.75003 * 5 4 3 24 24 H 1.09006 * 109.47045 * 62.35889 * 1 2 3 25 25 H 1.09001 * 109.47231 * 182.35220 * 1 2 3 26 26 H 1.08993 * 109.47331 * 302.35804 * 1 2 3 27 27 H 1.09000 * 109.47631 * 239.99679 * 2 1 3 28 28 H 1.09004 * 109.46723 * 119.99776 * 2 1 3 29 29 H 1.09001 * 109.47257 * 62.28082 * 4 3 2 30 30 H 1.09000 * 109.47308 * 302.27611 * 4 3 2 31 31 H 0.96997 * 120.00218 * 5.21421 * 8 6 5 32 32 H 1.08991 * 109.47125 * 63.97697 * 9 8 6 33 33 H 1.09009 * 109.46813 * 303.97834 * 9 8 6 34 34 H 0.96998 * 120.00252 * 238.81187 * 11 10 9 35 35 H 0.96993 * 120.00569 * 174.98188 * 15 14 12 36 36 H 1.09006 * 117.50194 * 214.99806 * 20 10 9 37 37 H 1.09004 * 117.49916 * 0.02562 * 20 10 9 38 38 H 1.08998 * 117.49520 * 359.97438 * 21 10 9 39 39 H 1.08998 * 117.49993 * 144.96870 * 21 10 9 40 40 H 1.09003 * 117.49847 * 215.00132 * 22 5 4 41 41 H 1.09001 * 117.50578 * 0.02562 * 22 5 4 42 42 H 1.09000 * 117.49783 * 359.97438 * 23 5 4 43 43 H 1.08997 * 117.49899 * 144.97354 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4279 1.4611 0.0912 5 6 3.8190 2.9395 0.1400 6 6 3.3140 3.7834 -1.0018 7 8 4.0981 4.2757 -1.7851 8 7 1.9908 3.9913 -1.1523 9 6 1.4917 4.7147 -2.3244 10 6 -0.0223 4.8990 -2.2034 11 7 -0.4578 6.0013 -1.3424 12 6 -0.0624 7.2830 -1.6183 13 1 0.6299 7.4727 -2.4251 14 6 -0.5516 8.3385 -0.8610 15 7 -1.3081 8.0999 0.1894 16 14 -0.1367 10.0977 -1.3328 17 1 -0.6739 11.0256 -0.3052 18 1 1.3378 10.2528 -1.4172 19 1 -0.7439 10.4132 -2.6506 20 6 -0.8726 4.5874 -3.4365 21 6 -0.8918 3.6405 -2.2340 22 6 3.9166 3.5993 1.5170 23 6 5.1890 3.2889 0.7248 24 1 -0.3633 0.4768 -0.9104 25 1 -0.3634 -1.0268 0.0422 26 1 -0.3633 0.5500 0.8680 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8866 0.9925 -0.7795 30 1 3.7749 0.9634 0.9968 31 1 1.3691 3.6619 -0.4847 32 1 1.7176 4.1455 -3.2260 33 1 1.9732 5.6911 -2.3809 34 1 -1.0263 5.8234 -0.5768 35 1 -1.5898 8.8315 0.7605 36 1 -1.7562 5.2025 -3.6072 37 1 -0.3534 4.2507 -4.3339 38 1 -0.3852 2.6813 -2.3408 39 1 -1.7876 3.6325 -1.6132 40 1 3.6155 4.6438 1.5970 41 1 3.7026 2.9801 2.3882 42 1 5.8114 2.4655 1.0751 43 1 5.7252 4.1289 0.2833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699655214.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:34 Heat of formation + Delta-G solvation = -45.468338 kcal Electronic energy + Delta-G solvation = -23087.279535 eV Core-core repulsion = 19747.640670 eV Total energy + Delta-G solvation = -3339.638865 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19908 -39.33037 -38.72913 -37.21442 -35.26491 -34.75410 -32.13212 -31.66859 -28.69784 -27.57272 -25.95730 -23.95878 -23.64372 -23.32884 -23.04791 -20.95140 -20.18641 -19.16531 -18.27419 -17.39079 -17.25174 -16.94970 -16.61440 -16.34918 -15.94574 -15.82178 -15.24892 -14.97006 -14.80061 -14.37664 -14.23032 -13.70161 -13.50379 -13.32767 -13.03209 -12.92054 -12.87082 -12.50380 -12.35848 -12.29105 -12.23661 -12.09988 -11.98153 -11.63129 -11.54252 -11.27406 -10.97208 -10.96387 -10.58608 -10.40639 -9.95199 -9.01580 -7.96018 -5.25514 1.44288 1.46110 1.52282 1.59259 2.13840 2.50905 2.52749 2.96007 3.10630 3.36650 3.64853 3.71559 3.76800 3.83915 3.90389 3.99331 4.16557 4.27232 4.32189 4.36624 4.50283 4.59363 4.62508 4.70708 4.72646 4.81306 4.86971 4.93408 4.94875 4.96348 5.02402 5.14420 5.16382 5.17482 5.36641 5.40879 5.52938 5.56071 6.25584 6.31944 6.67845 7.30904 7.31757 8.04538 8.28647 9.25175 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015240 B = 0.005259 C = 0.004520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.881622 B = 5323.421451 C = 6193.464914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.405 6.405 4 C 0.114 3.886 5 C -0.174 4.174 6 C 0.541 3.459 7 O -0.596 6.596 8 N -0.688 5.688 9 C 0.159 3.841 10 C 0.103 3.897 11 N -0.697 5.697 12 C -0.233 4.233 13 H 0.067 0.933 14 C -0.067 4.067 15 N -0.964 5.964 16 Si 0.965 3.035 17 H -0.292 1.292 18 H -0.284 1.284 19 H -0.279 1.279 20 C -0.188 4.188 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.126 4.126 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.411 0.589 32 H 0.069 0.931 33 H 0.037 0.963 34 H 0.377 0.623 35 H 0.252 0.748 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.376 -20.230 2.080 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.325 6.325 4 C 0.038 3.962 5 C -0.177 4.177 6 C 0.328 3.672 7 O -0.478 6.478 8 N -0.337 5.337 9 C 0.033 3.967 10 C 0.011 3.989 11 N -0.335 5.335 12 C -0.364 4.364 13 H 0.085 0.915 14 C -0.260 4.260 15 N -0.615 5.615 16 Si 0.794 3.206 17 H -0.218 1.218 18 H -0.210 1.210 19 H -0.206 1.206 20 C -0.228 4.228 21 C -0.186 4.186 22 C -0.184 4.184 23 C -0.163 4.163 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.248 0.752 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.210 0.790 35 H 0.061 0.939 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.774 -19.554 1.400 21.089 hybrid contribution -0.346 1.197 0.226 1.266 sum 7.429 -18.357 1.626 19.870 Atomic orbital electron populations 1.21777 0.93473 1.03108 1.02615 1.22601 0.95855 0.82579 1.00963 1.87877 1.21110 1.28228 1.95288 1.21831 0.81862 0.90426 1.02089 1.21433 1.05254 0.96147 0.94876 1.20049 0.82053 0.79736 0.85367 1.90630 1.56793 1.52911 1.47506 1.45776 1.07151 1.55474 1.25256 1.20933 0.92814 0.95155 0.87797 1.20310 0.89491 0.91517 0.97630 1.41812 1.59203 1.01665 1.30801 1.19363 1.19920 0.84414 1.12735 0.91534 1.25427 1.00700 1.01298 0.98545 1.69766 1.42208 1.31880 1.17603 0.85342 0.77421 0.80585 0.77222 1.21816 1.21000 1.20583 1.23436 1.02854 1.03310 0.93250 1.23084 1.01111 0.93477 1.00975 1.23166 1.00958 1.01385 0.92892 1.23094 0.89052 1.04144 1.00007 0.92667 0.89304 0.92508 0.92910 0.91745 0.92487 0.89212 0.75249 0.91339 0.94495 0.78962 0.93935 0.90209 0.87662 0.86683 0.89004 0.90359 0.84847 0.84176 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 10.28 71.98 0.74 -1.58 16 2 C 0.06 0.86 6.66 71.98 0.48 1.34 16 3 O -0.40 -8.73 8.89 -148.98 -1.32 -10.06 16 4 C 0.11 2.19 5.82 71.98 0.42 2.61 16 5 C -0.17 -4.43 2.23 -52.93 -0.12 -4.55 16 6 C 0.54 19.43 6.98 87.65 0.61 20.04 16 7 O -0.60 -26.01 16.69 -3.02 -0.05 -26.06 16 8 N -0.69 -24.68 5.18 -463.06 -2.40 -27.08 16 9 C 0.16 6.28 5.70 86.38 0.49 6.77 16 10 C 0.10 4.07 2.23 3.60 0.01 4.08 16 11 N -0.70 -34.94 5.52 -303.37 -1.68 -36.62 16 12 C -0.23 -13.11 9.46 84.03 0.79 -12.32 16 13 H 0.07 3.75 7.39 -2.91 -0.02 3.73 16 14 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 15 N -0.96 -58.77 13.06 21.65 0.28 -58.49 16 16 Si 0.96 47.40 29.56 68.60 2.03 49.43 16 17 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 18 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 19 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 20 C -0.19 -6.45 10.11 30.61 0.31 -6.14 16 21 C -0.15 -4.63 10.07 30.62 0.31 -4.32 16 22 C -0.15 -3.29 9.93 30.62 0.30 -2.99 16 23 C -0.13 -2.65 9.78 30.62 0.30 -2.35 16 24 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.15 8.10 -2.39 -0.02 1.13 16 31 H 0.41 14.07 7.46 -92.71 -0.69 13.38 16 32 H 0.07 2.48 7.94 -2.39 -0.02 2.47 16 33 H 0.04 1.75 7.24 -2.38 -0.02 1.73 16 34 H 0.38 20.17 8.03 -92.71 -0.74 19.42 16 35 H 0.25 14.96 8.32 -92.71 -0.77 14.19 16 36 H 0.08 2.99 8.14 -2.38 -0.02 2.97 16 37 H 0.11 3.10 8.08 -2.38 -0.02 3.08 16 38 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.09 2.23 8.00 -2.39 -0.02 2.21 16 Total: -1.00 -70.86 363.23 1.54 -69.32 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: -0.44 Total: 42.38 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.12 Total: -2.82 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -3.79 Total: -122.18 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.37 Total: -36.12 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -70.86 1.54 -69.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699655214.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.847 kcal (2) G-P(sol) polarization free energy of solvation -70.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds