Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50701 * 119.99619 * 2 1 4 4 H 1.08996 * 110.67559 * 357.03336 * 3 2 1 5 5 O 1.44379 * 110.61557 * 234.07189 * 3 2 1 6 6 C 1.43743 * 106.97459 * 201.43873 * 5 3 2 7 7 C 1.54107 * 107.29306 * 26.50938 * 6 5 3 8 8 C 1.54808 * 104.18698 * 357.97614 * 7 6 5 9 9 H 1.08995 * 110.91046 * 97.35284 * 8 7 6 10 10 C 1.50705 * 110.90625 * 220.91959 * 8 7 6 11 11 O 1.21277 * 120.00250 * 118.54017 * 10 8 7 12 12 N 1.34771 * 119.99819 * 298.54767 * 10 8 7 13 13 C 1.46506 * 120.00040 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47049 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.46650 * 179.97438 * 14 13 12 16 16 H 1.08998 * 109.47461 * 304.99245 * 15 14 13 17 17 C 1.53007 * 109.46829 * 184.99665 * 15 14 13 18 18 N 1.46498 * 109.47304 * 64.99995 * 15 14 13 19 19 C 1.36943 * 119.99727 * 204.99863 * 18 15 14 20 20 H 1.07998 * 120.00392 * 359.97438 * 19 18 15 21 21 C 1.38811 * 119.99586 * 179.97438 * 19 18 15 22 22 N 1.31618 * 120.00460 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99694 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00129 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00122 * 23 21 19 27 27 H 1.07991 * 120.00374 * 359.97438 * 1 2 3 28 28 H 1.08007 * 119.99381 * 180.02562 * 1 2 3 29 29 H 1.08002 * 120.00179 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.87721 * 267.09208 * 6 5 3 31 31 H 1.09004 * 110.00480 * 146.00205 * 6 5 3 32 32 H 1.08994 * 110.48918 * 239.29281 * 7 6 5 33 33 H 1.09000 * 110.48565 * 116.64924 * 7 6 5 34 34 H 0.97002 * 120.00412 * 359.97438 * 12 10 8 35 35 H 1.08996 * 109.47122 * 59.99627 * 13 12 10 36 36 H 1.08997 * 109.46576 * 299.99430 * 13 12 10 37 37 H 1.08997 * 109.47028 * 59.99468 * 14 13 12 38 38 H 1.09001 * 109.46783 * 299.99668 * 14 13 12 39 39 H 1.08998 * 109.46756 * 300.00011 * 17 15 14 40 40 H 1.09004 * 109.46844 * 60.00268 * 17 15 14 41 41 H 1.08998 * 109.46879 * 179.97438 * 17 15 14 42 42 H 0.96998 * 120.00095 * 24.99322 * 18 15 14 43 43 H 0.97001 * 119.99952 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3739 2.1476 -0.0528 5 8 3.0043 1.3490 -1.0942 6 6 4.0000 2.3278 -0.7526 7 6 4.0580 2.4048 0.7855 8 6 2.9645 1.4152 1.2563 9 1 3.3984 0.4482 1.5105 10 6 2.1947 1.9795 2.4225 11 8 1.0023 2.1778 2.3231 12 7 2.8312 2.2639 3.5759 13 6 2.0827 2.8120 4.7098 14 6 3.0343 3.0421 5.8856 15 6 2.2527 3.6151 7.0695 16 1 1.7249 4.5154 6.7550 17 6 3.2225 3.9616 8.2011 18 7 1.2852 2.6219 7.5425 19 6 0.1584 3.0263 8.2075 20 1 -0.0168 4.0773 8.3836 21 6 -0.7586 2.0853 8.6552 22 7 -0.5449 0.8043 8.4411 23 14 -2.2952 2.6368 9.5629 24 1 -3.1058 1.4484 9.9316 25 1 -3.0954 3.5282 8.6853 26 1 -1.9064 3.3724 10.7930 27 1 -0.5400 0.9352 0.0004 28 1 -0.5399 -0.9354 0.0004 29 1 1.8501 -0.9353 0.0004 30 1 3.7211 3.2987 -1.1619 31 1 4.9708 2.0251 -1.1454 32 1 3.8306 3.4149 1.1257 33 1 5.0374 2.0911 1.1465 34 1 3.7848 2.1051 3.6555 35 1 1.3041 2.1087 5.0052 36 1 1.6266 3.7587 4.4204 37 1 3.8132 3.7452 5.5904 38 1 3.4901 2.0952 6.1748 39 1 3.7502 3.0612 8.5157 40 1 3.9423 4.7006 7.8492 41 1 2.6657 4.3701 9.0444 42 1 1.4427 1.6779 7.3847 43 1 0.2533 0.5179 7.9701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700327811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = -60.714334 kcal Electronic energy + Delta-G solvation = -22304.768231 eV Core-core repulsion = 18964.468251 eV Total energy + Delta-G solvation = -3340.299981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56846 -38.67132 -36.72319 -34.60693 -33.90618 -32.83793 -32.22122 -29.30502 -28.62496 -27.93783 -24.34469 -23.43562 -22.64869 -22.12685 -20.57085 -20.17688 -19.71765 -17.65848 -17.36972 -16.51266 -16.01474 -15.92060 -15.29549 -14.94401 -14.67640 -14.37342 -13.92439 -13.77542 -13.60146 -13.46384 -13.11251 -12.65096 -12.62979 -12.23258 -12.07446 -11.75539 -11.56907 -11.29993 -11.11653 -11.07621 -10.92457 -10.68567 -10.56957 -10.24298 -10.02528 -9.94757 -9.75576 -9.47660 -9.14077 -8.97097 -8.87436 -7.02850 -6.07638 -3.07844 2.09361 2.63225 3.13294 3.53674 3.57578 3.74642 3.76770 4.18269 4.33887 4.50033 4.69331 4.77796 4.88015 4.96315 5.10108 5.16931 5.19810 5.26134 5.39511 5.42101 5.51012 5.57137 5.65734 5.68904 5.72480 5.83555 5.95924 6.06489 6.23502 6.28285 6.36474 6.49133 6.52805 6.54175 6.58588 6.72401 6.77303 6.96527 7.52792 7.83005 8.25149 8.77690 9.24030 10.10461 10.24810 11.40572 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.003626 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.585015 B = 7720.012176 C = 8817.669973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.161 4.161 3 C 0.128 3.872 4 H 0.087 0.913 5 O -0.370 6.370 6 C 0.048 3.952 7 C -0.148 4.148 8 C -0.139 4.139 9 H 0.113 0.887 10 C 0.520 3.480 11 O -0.529 6.529 12 N -0.727 5.727 13 C 0.123 3.877 14 C -0.133 4.133 15 C 0.180 3.820 16 H 0.050 0.950 17 C -0.163 4.163 18 N -0.735 5.735 19 C -0.331 4.331 20 H 0.064 0.936 21 C -0.044 4.044 22 N -0.943 5.943 23 Si 1.078 2.922 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.296 1.296 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.113 0.887 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.396 0.604 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.036 0.964 41 H 0.055 0.945 42 H 0.366 0.634 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.598 2.499 -16.548 20.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.179 4.179 3 C 0.070 3.930 4 H 0.105 0.895 5 O -0.289 6.289 6 C -0.029 4.029 7 C -0.186 4.186 8 C -0.161 4.161 9 H 0.131 0.869 10 C 0.304 3.696 11 O -0.405 6.405 12 N -0.378 5.378 13 C 0.000 4.000 14 C -0.172 4.172 15 C 0.069 3.931 16 H 0.068 0.932 17 C -0.223 4.223 18 N -0.378 5.378 19 C -0.461 4.461 20 H 0.082 0.918 21 C -0.242 4.242 22 N -0.589 5.589 23 Si 0.909 3.091 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.223 1.223 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.229 0.771 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.199 0.801 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.239 2.234 -16.007 19.133 hybrid contribution 2.119 0.337 -0.347 2.173 sum 12.358 2.571 -16.354 20.659 Atomic orbital electron populations 1.23937 0.95736 1.02462 0.96591 1.22514 0.95750 0.96662 1.03013 1.21982 0.90368 0.97347 0.83264 0.89535 1.88927 1.38502 1.60241 1.41247 1.23124 0.92963 0.92986 0.93820 1.22965 0.99056 1.00059 0.96484 1.22905 0.96967 1.01138 0.95042 0.86943 1.20105 0.87806 0.78176 0.83467 1.90746 1.14812 1.52265 1.82650 1.46115 1.12321 1.65866 1.13507 1.21440 0.94942 0.99596 0.84030 1.22080 0.98046 1.01483 0.95600 1.20087 0.89634 0.93017 0.90332 0.93190 1.22411 0.99138 0.99897 1.00853 1.42458 1.22748 1.03813 1.68791 1.20017 0.99440 0.94106 1.32586 0.91806 1.25730 1.02800 0.93973 1.01650 1.70888 1.29148 1.14526 1.44303 0.83266 0.75449 0.74808 0.75555 1.21070 1.22251 1.22346 0.87949 0.87849 0.86884 0.92074 0.89461 0.89972 0.89447 0.77062 0.90072 0.91734 0.91776 0.91752 0.93661 0.94454 0.92629 0.80072 0.93485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 14.33 29.01 0.42 -1.38 16 2 C -0.16 -1.93 9.24 -36.03 -0.33 -2.27 16 3 C 0.13 1.54 2.73 -26.83 -0.07 1.47 16 4 H 0.09 1.16 7.25 -51.93 -0.38 0.79 16 5 O -0.37 -4.29 11.21 -35.23 -0.39 -4.69 16 6 C 0.05 0.40 7.70 37.74 0.29 0.69 16 7 C -0.15 -1.15 6.55 -25.20 -0.16 -1.31 16 8 C -0.14 -1.47 2.94 -89.76 -0.26 -1.74 16 9 H 0.11 1.05 8.05 -51.93 -0.42 0.64 16 10 C 0.52 7.34 7.05 -10.99 -0.08 7.26 16 11 O -0.53 -9.81 15.80 5.56 0.09 -9.73 16 12 N -0.73 -9.28 5.50 -60.29 -0.33 -9.61 16 13 C 0.12 1.99 5.56 -4.04 -0.02 1.96 16 14 C -0.13 -1.98 4.87 -26.73 -0.13 -2.11 16 15 C 0.18 3.44 2.89 -67.93 -0.20 3.24 16 16 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 17 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 18 N -0.73 -17.95 4.57 -53.42 -0.24 -18.19 16 19 C -0.33 -9.25 9.93 -15.06 -0.15 -9.40 16 20 H 0.06 1.77 7.83 -52.49 -0.41 1.35 16 21 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 22 N -0.94 -29.36 13.70 55.49 0.76 -28.60 16 23 Si 1.08 26.27 29.92 -169.99 -5.09 21.19 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.30 -6.87 7.11 56.52 0.40 -6.46 16 27 H 0.10 1.28 7.87 -52.49 -0.41 0.87 16 28 H 0.10 1.05 8.06 -52.48 -0.42 0.63 16 29 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.65 7.85 -51.93 -0.41 0.24 16 33 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 35 H 0.08 1.66 7.75 -51.93 -0.40 1.26 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.37 9.28 6.63 -40.82 -0.27 9.01 16 43 H 0.25 7.78 6.77 -40.82 -0.28 7.50 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -33.98 356.74 -7.47 -41.44 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.19 Total: 10.26 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: -0.45 Total: -7.45 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.18 Total: -56.41 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.31 Total: -14.41 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -5.09 Total: 21.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.98 -7.47 -41.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700327811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.270 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds