Wall clock time and date at job start Tue Mar 31 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42893 * 109.47122 * 2 1 4 4 C 1.42903 * 114.00132 * 184.64388 * 3 2 1 5 5 H 1.09001 * 109.46920 * 329.93846 * 4 3 2 6 6 C 1.50694 * 109.47012 * 89.93691 * 4 3 2 7 7 O 1.21281 * 120.00619 * 5.00371 * 6 4 3 8 8 N 1.34778 * 120.00033 * 184.99885 * 6 4 3 9 9 C 1.46502 * 120.00075 * 179.97438 * 8 6 4 10 10 H 1.08998 * 110.91352 * 37.45251 * 9 8 6 11 11 C 1.55161 * 111.00364 * 161.35213 * 9 8 6 12 12 C 1.54319 * 102.94286 * 153.57684 * 11 9 8 13 13 N 1.47288 * 107.30692 * 337.81637 * 12 11 9 14 14 C 1.36939 * 125.79399 * 178.92120 * 13 12 11 15 15 H 1.08001 * 120.00009 * 179.97438 * 14 13 12 16 16 C 1.38811 * 119.99955 * 0.02562 * 14 13 12 17 17 N 1.31618 * 119.99991 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99763 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47393 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47106 * 119.99807 * 18 16 14 21 21 H 1.48500 * 109.47086 * 239.99180 * 18 16 14 22 22 C 1.47429 * 108.55777 * 358.92701 * 13 12 11 23 23 C 1.53005 * 109.47093 * 209.93902 * 4 3 2 24 24 C 1.52999 * 117.49658 * 132.00740 * 23 4 3 25 25 C 1.52997 * 117.49866 * 63.34354 * 23 4 3 26 26 H 1.08996 * 109.46936 * 60.00095 * 1 2 3 27 27 H 1.09007 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47189 * 299.99602 * 1 2 3 29 29 H 1.08996 * 109.46906 * 239.99682 * 2 1 3 30 30 H 1.08996 * 109.46936 * 119.99905 * 2 1 3 31 31 H 0.96999 * 120.00095 * 0.02562 * 8 6 4 32 32 H 1.08997 * 110.71882 * 271.94251 * 11 9 8 33 33 H 1.09003 * 110.71897 * 35.21057 * 11 9 8 34 34 H 1.08994 * 109.88061 * 97.22681 * 12 11 9 35 35 H 1.09007 * 109.88402 * 218.23713 * 12 11 9 36 36 H 0.96996 * 120.00076 * 180.02562 * 17 16 14 37 37 H 1.08997 * 110.36744 * 265.25702 * 22 13 12 38 38 H 1.09003 * 110.36384 * 143.04650 * 22 13 12 39 39 H 1.09002 * 115.54616 * 277.66973 * 23 4 3 40 40 H 1.08995 * 117.50017 * 359.97438 * 24 23 4 41 41 H 1.09004 * 117.49712 * 145.01966 * 24 23 4 42 42 H 1.08999 * 117.49667 * 214.97720 * 25 23 4 43 43 H 1.09000 * 117.49928 * 359.97438 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4268 1.4615 -0.1057 5 1 3.8964 0.5904 0.3513 6 6 3.8178 1.5385 -1.5590 7 8 2.9609 1.5909 -2.4157 8 7 5.1199 1.5492 -1.9069 9 6 5.5000 1.6234 -3.3198 10 1 4.8242 2.2776 -3.8707 11 6 6.9726 2.0865 -3.4760 12 6 7.3869 1.4710 -4.8291 13 7 6.4812 0.3394 -5.0913 14 6 6.5006 -0.4611 -6.2021 15 1 5.7900 -1.2687 -6.2982 16 6 7.4343 -0.2354 -7.2042 17 7 8.3007 0.7484 -7.0868 18 14 7.4612 -1.3280 -8.7191 19 1 6.3929 -2.3535 -8.6088 20 1 7.2304 -0.5004 -9.9304 21 1 8.7820 -1.9987 -8.8223 22 6 5.5486 0.2122 -3.9566 23 6 3.8916 2.7285 0.6153 24 6 5.0721 2.5995 1.5801 25 6 3.6569 2.8085 2.1251 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 5.8053 1.5070 -1.2219 32 1 7.0330 3.1742 -3.5124 33 1 7.5887 1.6919 -2.6680 34 1 7.2891 2.2145 -5.6200 35 1 8.4173 1.1193 -4.7765 36 1 8.9529 0.9064 -7.7872 37 1 5.9234 -0.5159 -3.2373 38 1 4.5593 -0.0790 -4.3096 39 1 3.8078 3.6525 0.0432 40 1 5.5173 1.6120 1.7014 41 1 5.7646 3.4388 1.6430 42 1 3.4191 3.7853 2.5463 43 1 3.1710 1.9588 2.6046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714996470.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:01 Heat of formation + Delta-G solvation = -32.182649 kcal Electronic energy + Delta-G solvation = -22711.936420 eV Core-core repulsion = 19372.873666 eV Total energy + Delta-G solvation = -3339.062754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15420 -38.21212 -36.98128 -36.66884 -33.94166 -31.94055 -31.44931 -29.29149 -28.25128 -26.57538 -24.39820 -23.06933 -22.56831 -21.66171 -20.54524 -20.32688 -19.84463 -17.74336 -17.16164 -16.67111 -15.89602 -15.71193 -15.28564 -14.88068 -14.55688 -14.37368 -13.81130 -13.73312 -13.23755 -12.88048 -12.66918 -12.42456 -12.21018 -12.01815 -11.82047 -11.81197 -11.60592 -11.26543 -10.97213 -10.89224 -10.81664 -10.72980 -10.62029 -10.36662 -10.23809 -10.05914 -9.91290 -9.71004 -9.13215 -8.72138 -8.59433 -6.83292 -5.71050 -3.04303 2.72629 3.02583 3.32914 3.41478 3.47217 3.49691 3.93323 4.39455 4.50944 4.56160 4.66288 4.74119 4.91593 4.98557 5.07651 5.25220 5.29622 5.31325 5.35639 5.45517 5.55970 5.59987 5.62205 5.74813 5.80562 5.81053 5.81819 5.87424 6.01269 6.19434 6.33631 6.41831 6.60846 6.70953 6.90484 7.02922 7.53826 7.57340 7.73057 7.82597 8.24597 8.43597 9.22092 9.82144 10.47512 11.41219 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024047 B = 0.003760 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.110231 B = 7445.093137 C = 8373.265251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.353 6.353 4 C 0.107 3.893 5 H 0.083 0.917 6 C 0.490 3.510 7 O -0.523 6.523 8 N -0.712 5.712 9 C 0.128 3.872 10 H 0.093 0.907 11 C -0.148 4.148 12 C 0.179 3.821 13 N -0.604 5.604 14 C -0.226 4.226 15 H 0.079 0.921 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.290 1.290 21 H -0.291 1.291 22 C 0.130 3.870 23 C -0.152 4.152 24 C -0.172 4.172 25 C -0.161 4.161 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.397 0.603 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.252 0.748 37 H 0.018 0.982 38 H 0.042 0.958 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 2.625 20.246 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.045 3.955 5 H 0.100 0.900 6 C 0.274 3.726 7 O -0.398 6.398 8 N -0.365 5.365 9 C 0.023 3.977 10 H 0.111 0.889 11 C -0.187 4.187 12 C 0.054 3.946 13 N -0.331 5.331 14 C -0.354 4.354 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.743 3.257 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.218 1.218 22 C 0.002 3.998 23 C -0.171 4.171 24 C -0.209 4.209 25 C -0.198 4.198 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.116 0.884 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.201 2.792 19.422 21.266 hybrid contribution 0.629 -0.803 -0.593 1.180 sum -7.572 1.990 18.829 20.392 Atomic orbital electron populations 1.21701 0.93460 1.02175 1.03194 1.22578 0.96029 0.83551 1.00031 1.87995 1.18624 1.26692 1.93702 1.21463 0.83873 0.97943 0.92172 0.89960 1.21156 0.83046 0.76964 0.91401 1.90729 1.49542 1.48071 1.51463 1.46030 1.06854 1.74627 1.08979 1.22290 0.96510 0.99046 0.79857 0.88923 1.23165 0.94024 1.00359 1.01153 1.21181 0.93995 0.89506 0.89943 1.44460 1.35350 1.34928 1.18352 1.19126 1.13602 1.08291 0.94389 0.90340 1.24798 0.98172 0.98763 0.98749 1.69951 1.21438 1.31747 1.33981 0.86023 0.77269 0.79553 0.82812 1.20491 1.21705 1.21763 1.21810 0.94237 0.93349 0.90385 1.22085 1.03818 0.98308 0.92849 1.23117 0.91369 1.03743 1.02638 1.22863 0.98574 1.03550 0.94783 0.91474 0.91147 0.92033 0.92877 0.93550 0.76961 0.91564 0.92010 0.93245 0.93555 0.93796 0.96445 0.93949 0.86761 0.88353 0.87888 0.88387 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.05 16 2 C 0.05 0.61 6.43 37.16 0.24 0.85 16 3 O -0.35 -4.71 9.48 -55.09 -0.52 -5.23 16 4 C 0.11 1.27 2.69 -27.88 -0.07 1.19 16 5 H 0.08 0.79 7.61 -51.93 -0.40 0.40 16 6 C 0.49 7.63 7.11 -10.99 -0.08 7.55 16 7 O -0.52 -10.59 16.25 -14.30 -0.23 -10.82 16 8 N -0.71 -10.32 5.19 -51.73 -0.27 -10.59 16 9 C 0.13 2.36 3.32 -65.78 -0.22 2.14 16 10 H 0.09 1.91 7.73 -51.93 -0.40 1.51 16 11 C -0.15 -2.66 6.58 -24.90 -0.16 -2.82 16 12 C 0.18 4.31 5.38 -2.92 -0.02 4.30 16 13 N -0.60 -15.84 3.40 -169.86 -0.58 -16.42 16 14 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 15 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -27.26 10.33 55.49 0.57 -26.69 16 18 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 22 C 0.13 2.85 6.92 -2.53 -0.02 2.84 16 23 C -0.15 -1.47 5.31 -90.62 -0.48 -1.96 16 24 C -0.17 -1.21 10.18 -26.69 -0.27 -1.48 16 25 C -0.16 -1.24 10.21 -26.69 -0.27 -1.51 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 4.48 8.51 -40.82 -0.35 4.13 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 34 H 0.05 1.32 7.39 -51.93 -0.38 0.94 16 35 H 0.05 1.22 7.52 -51.92 -0.39 0.83 16 36 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.11 1.23 8.13 -51.93 -0.42 0.80 16 40 H 0.10 0.59 8.07 -51.93 -0.42 0.18 16 41 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 354.37 15.07 5.34 5.34 Total: -1.00 -33.69 354.37 -9.30 -42.99 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.37 Total: 0.90 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.22 Total: 3.09 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.27 Total: -53.69 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.75 Total: -16.05 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.69 -9.30 -42.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714996470.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.810 kcal (2) G-P(sol) polarization free energy of solvation -33.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds