Wall clock time and date at job start Tue Mar 31 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42910 * 109.46700 * 2 1 4 4 C 1.42896 * 113.99489 * 184.62251 * 3 2 1 5 5 H 1.09004 * 109.47270 * 27.79533 * 4 3 2 6 6 C 1.50696 * 109.47421 * 267.79294 * 4 3 2 7 7 O 1.21283 * 119.99967 * 0.02562 * 6 4 3 8 8 N 1.34776 * 120.00106 * 180.02562 * 6 4 3 9 9 C 1.46508 * 119.99946 * 179.97438 * 8 6 4 10 10 H 1.09000 * 110.91238 * 37.45226 * 9 8 6 11 11 C 1.55151 * 111.00141 * 161.34978 * 9 8 6 12 12 C 1.54329 * 102.94313 * 153.57933 * 11 9 8 13 13 N 1.47289 * 107.29999 * 337.81688 * 12 11 9 14 14 C 1.36942 * 125.79227 * 178.92606 * 13 12 11 15 15 H 1.07994 * 120.00054 * 174.78282 * 14 13 12 16 16 C 1.38811 * 119.99832 * 354.79082 * 14 13 12 17 17 N 1.31625 * 120.00101 * 7.67220 * 16 14 13 18 18 Si 1.86800 * 119.99985 * 187.68099 * 16 14 13 19 19 H 1.48496 * 109.47194 * 94.97795 * 18 16 14 20 20 H 1.48506 * 109.47050 * 214.97737 * 18 16 14 21 21 H 1.48503 * 109.47193 * 334.97462 * 18 16 14 22 22 C 1.47424 * 108.56234 * 358.92224 * 13 12 11 23 23 C 1.53008 * 109.47016 * 147.79039 * 4 3 2 24 24 C 1.53001 * 117.49515 * 3.53144 * 23 4 3 25 25 C 1.52999 * 59.99996 * 252.50886 * 24 23 4 26 26 H 1.09000 * 109.47759 * 59.99853 * 1 2 3 27 27 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47120 * 300.00220 * 1 2 3 29 29 H 1.08991 * 109.47033 * 240.00089 * 2 1 3 30 30 H 1.08999 * 109.47451 * 119.99431 * 2 1 3 31 31 H 0.96995 * 120.00359 * 0.02562 * 8 6 4 32 32 H 1.09006 * 110.72384 * 271.93836 * 11 9 8 33 33 H 1.09001 * 110.72512 * 35.21582 * 11 9 8 34 34 H 1.08997 * 109.88109 * 97.21938 * 12 11 9 35 35 H 1.08998 * 109.88269 * 218.23778 * 12 11 9 36 36 H 0.97001 * 119.99687 * 180.02562 * 17 16 14 37 37 H 1.09003 * 110.37021 * 265.26605 * 22 13 12 38 38 H 1.08997 * 110.36781 * 143.04919 * 22 13 12 39 39 H 1.08994 * 115.54818 * 149.23644 * 23 4 3 40 40 H 1.08997 * 117.49714 * 359.97438 * 24 23 4 41 41 H 1.08997 * 117.49655 * 145.01695 * 24 23 4 42 42 H 1.09003 * 117.49956 * 252.51402 * 25 24 23 43 43 H 1.08999 * 117.49584 * 107.48719 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4268 1.4616 -0.1052 5 1 3.8222 0.5977 -0.6394 6 6 4.0298 1.5182 1.2747 7 8 3.3136 1.4653 2.2521 8 7 5.3649 1.6275 1.4227 9 6 5.9511 1.6830 2.7642 10 1 5.4190 1.0226 3.4490 11 6 7.4639 1.3409 2.7246 12 6 8.0182 2.0807 3.9604 13 7 7.0697 3.1592 4.2871 14 6 7.1839 4.0370 5.3319 15 1 6.4772 4.8469 5.4365 16 6 8.2083 3.8859 6.2565 17 7 9.1560 2.9963 6.0492 18 14 8.2416 4.9450 7.7949 19 1 7.6002 4.2110 8.9151 20 1 9.6492 5.2581 8.1498 21 1 7.5021 6.2078 7.5426 22 6 5.9748 3.1362 3.3000 23 6 3.7805 2.7393 -0.8692 24 6 2.6281 3.6566 -1.2832 25 6 3.3596 2.8237 -2.3377 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 5.9377 1.6701 0.6411 32 1 7.6188 0.2658 2.8172 33 1 7.9214 1.7201 1.8108 34 1 8.0980 1.3909 4.8005 35 1 8.9973 2.5018 3.7322 36 1 9.8716 2.8905 6.6955 37 1 6.1797 3.8360 2.4898 38 1 5.0266 3.3792 3.7795 39 1 4.7225 3.2097 -0.5877 40 1 1.6181 3.3498 -1.0118 41 1 2.8119 4.7310 -1.2741 42 1 4.0247 3.3500 -3.0224 43 1 2.8308 1.9690 -2.7596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714996471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:03 Heat of formation + Delta-G solvation = -31.210000 kcal Electronic energy + Delta-G solvation = -22739.526951 eV Core-core repulsion = 19400.506374 eV Total energy + Delta-G solvation = -3339.020577 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17604 -38.28669 -36.94992 -36.43821 -33.95966 -31.96295 -31.43917 -29.32504 -28.33748 -26.57937 -24.36762 -23.13136 -22.40281 -21.63919 -20.55700 -20.35584 -19.71534 -17.74290 -17.01477 -16.71599 -15.94327 -15.74137 -15.18772 -14.99264 -14.56538 -14.20938 -13.94356 -13.71630 -13.11381 -12.96566 -12.64441 -12.41565 -12.23490 -12.00831 -11.80566 -11.68635 -11.55292 -11.39363 -10.95351 -10.91864 -10.75155 -10.70745 -10.41577 -10.29921 -10.28611 -10.07157 -9.90868 -9.71351 -9.10960 -8.71926 -8.55929 -6.82159 -5.71707 -3.03292 2.68827 3.12245 3.42966 3.48469 3.49932 3.58039 3.70540 4.43884 4.53515 4.66000 4.69817 4.86619 4.97083 5.01279 5.07610 5.20253 5.26269 5.32882 5.45537 5.48376 5.49983 5.60465 5.72785 5.74817 5.78010 5.81845 5.92432 5.94628 6.12095 6.19015 6.33621 6.40984 6.61533 6.74067 6.89592 7.02460 7.52081 7.59256 7.72105 7.82852 8.25297 8.43383 9.22599 9.83014 10.48790 11.41010 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.003540 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.226639 B = 7908.290962 C = 8030.626072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.107 3.893 5 H 0.088 0.912 6 C 0.492 3.508 7 O -0.523 6.523 8 N -0.715 5.715 9 C 0.128 3.872 10 H 0.092 0.908 11 C -0.149 4.149 12 C 0.178 3.822 13 N -0.604 5.604 14 C -0.227 4.227 15 H 0.079 0.921 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.911 3.089 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.130 3.870 23 C -0.162 4.162 24 C -0.157 4.157 25 C -0.171 4.171 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.396 0.604 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.252 0.748 37 H 0.018 0.982 38 H 0.043 0.957 39 H 0.120 0.880 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -6.162 -18.572 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.270 6.270 4 C 0.045 3.955 5 H 0.105 0.895 6 C 0.276 3.724 7 O -0.398 6.398 8 N -0.368 5.368 9 C 0.023 3.977 10 H 0.110 0.890 11 C -0.187 4.187 12 C 0.053 3.947 13 N -0.331 5.331 14 C -0.355 4.355 15 H 0.097 0.903 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.003 3.997 23 C -0.181 4.181 24 C -0.193 4.193 25 C -0.208 4.208 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.230 0.770 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.036 0.964 38 H 0.062 0.938 39 H 0.138 0.862 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.409 -6.009 -17.650 21.859 hybrid contribution 0.665 0.309 0.504 0.890 sum -10.744 -5.700 -17.146 21.022 Atomic orbital electron populations 1.21708 0.93522 1.02173 1.03173 1.22588 0.95876 0.83645 1.00096 1.87982 1.18388 1.26497 1.94178 1.21374 0.83227 0.98373 0.92512 0.89478 1.21131 0.82669 0.76824 0.91742 1.90726 1.60308 1.48262 1.40455 1.46066 1.06774 1.74556 1.09437 1.22283 0.93758 0.99166 0.82447 0.88964 1.23168 0.93759 1.00601 1.01212 1.21188 0.92530 0.89492 0.91488 1.44455 1.22059 1.36164 1.30428 1.19083 1.10812 1.05639 0.99976 0.90345 1.24816 0.97323 0.99298 0.98924 1.69963 1.13460 1.37571 1.35925 0.86106 0.76790 0.79496 0.83463 1.21569 1.21788 1.20598 1.21808 0.92615 0.92878 0.92415 1.22323 1.01003 0.97768 0.96994 1.22873 0.97797 0.97006 1.01666 1.22968 1.03862 1.03205 0.90801 0.92048 0.91166 0.91510 0.93561 0.92827 0.76983 0.91614 0.91993 0.93181 0.93698 0.93755 0.96408 0.93821 0.86163 0.87382 0.88767 0.88502 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.56 6.52 37.16 0.24 0.81 16 3 O -0.35 -4.49 7.88 -55.14 -0.43 -4.92 16 4 C 0.11 1.24 2.88 -27.88 -0.08 1.16 16 5 H 0.09 0.79 7.69 -51.93 -0.40 0.39 16 6 C 0.49 7.59 7.20 -10.99 -0.08 7.51 16 7 O -0.52 -10.52 16.25 -14.35 -0.23 -10.75 16 8 N -0.72 -10.27 4.98 -51.73 -0.26 -10.53 16 9 C 0.13 2.37 3.32 -65.78 -0.22 2.15 16 10 H 0.09 1.89 7.73 -51.93 -0.40 1.49 16 11 C -0.15 -2.65 6.58 -24.90 -0.16 -2.82 16 12 C 0.18 4.30 5.39 -2.91 -0.02 4.28 16 13 N -0.60 -15.90 3.40 -169.86 -0.58 -16.48 16 14 C -0.23 -6.53 10.27 -15.06 -0.15 -6.68 16 15 H 0.08 2.21 7.84 -52.49 -0.41 1.79 16 16 C -0.01 -0.22 5.48 -17.43 -0.10 -0.31 16 17 N -0.92 -27.27 10.39 55.49 0.58 -26.70 16 18 Si 0.91 22.55 29.56 -169.99 -5.02 17.52 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.13 2.89 6.92 -2.53 -0.02 2.87 16 23 C -0.16 -1.65 5.62 -90.61 -0.51 -2.16 16 24 C -0.16 -1.57 9.87 -26.73 -0.26 -1.83 16 25 C -0.17 -1.39 10.24 -26.73 -0.27 -1.66 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.38 7.98 -51.93 -0.41 -0.04 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.40 4.37 8.18 -40.82 -0.33 4.03 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.97 8.00 -51.93 -0.42 0.56 16 34 H 0.05 1.34 7.32 -51.93 -0.38 0.96 16 35 H 0.04 1.18 7.61 -51.93 -0.40 0.79 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.12 1.19 7.63 -51.93 -0.40 0.80 16 40 H 0.11 1.20 7.02 -51.93 -0.36 0.83 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -33.67 351.07 -9.18 -42.86 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.28 Total: 1.32 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -1.25 Total: 2.40 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.26 Total: -53.70 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.67 Total: -15.67 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.67 -9.18 -42.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714996471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.646 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds