Wall clock time and date at job start Tue Mar 31 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42910 * 109.46700 * 2 1 4 4 C 1.42896 * 113.99489 * 184.62251 * 3 2 1 5 5 H 1.09004 * 109.47270 * 27.79533 * 4 3 2 6 6 C 1.50696 * 109.47421 * 267.79294 * 4 3 2 7 7 O 1.21283 * 119.99967 * 0.02562 * 6 4 3 8 8 N 1.34776 * 120.00106 * 180.02562 * 6 4 3 9 9 C 1.46508 * 119.99946 * 179.97438 * 8 6 4 10 10 H 1.09000 * 110.91238 * 37.45226 * 9 8 6 11 11 C 1.55151 * 111.00141 * 161.34978 * 9 8 6 12 12 C 1.54329 * 102.94313 * 153.57933 * 11 9 8 13 13 N 1.47289 * 107.29999 * 337.81688 * 12 11 9 14 14 C 1.36942 * 125.79227 * 178.92606 * 13 12 11 15 15 H 1.07994 * 120.00054 * 174.78282 * 14 13 12 16 16 C 1.38811 * 119.99832 * 354.79082 * 14 13 12 17 17 N 1.31625 * 120.00101 * 7.67220 * 16 14 13 18 18 Si 1.86800 * 119.99985 * 187.68099 * 16 14 13 19 19 H 1.48496 * 109.47194 * 94.97795 * 18 16 14 20 20 H 1.48506 * 109.47050 * 214.97737 * 18 16 14 21 21 H 1.48503 * 109.47193 * 334.97462 * 18 16 14 22 22 C 1.47424 * 108.56234 * 358.92224 * 13 12 11 23 23 C 1.53008 * 109.47016 * 147.79039 * 4 3 2 24 24 C 1.53001 * 117.49515 * 3.53144 * 23 4 3 25 25 C 1.52999 * 59.99996 * 252.50886 * 24 23 4 26 26 H 1.09000 * 109.47759 * 59.99853 * 1 2 3 27 27 H 1.09000 * 109.47288 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47120 * 300.00220 * 1 2 3 29 29 H 1.08991 * 109.47033 * 240.00089 * 2 1 3 30 30 H 1.08999 * 109.47451 * 119.99431 * 2 1 3 31 31 H 0.96995 * 120.00359 * 0.02562 * 8 6 4 32 32 H 1.09006 * 110.72384 * 271.93836 * 11 9 8 33 33 H 1.09001 * 110.72512 * 35.21582 * 11 9 8 34 34 H 1.08997 * 109.88109 * 97.21938 * 12 11 9 35 35 H 1.08998 * 109.88269 * 218.23778 * 12 11 9 36 36 H 0.97001 * 119.99687 * 180.02562 * 17 16 14 37 37 H 1.09003 * 110.37021 * 265.26605 * 22 13 12 38 38 H 1.08997 * 110.36781 * 143.04919 * 22 13 12 39 39 H 1.08994 * 115.54818 * 149.23644 * 23 4 3 40 40 H 1.08997 * 117.49714 * 359.97438 * 24 23 4 41 41 H 1.08997 * 117.49655 * 145.01695 * 24 23 4 42 42 H 1.09003 * 117.49956 * 252.51402 * 25 24 23 43 43 H 1.08999 * 117.49584 * 107.48719 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4268 1.4616 -0.1052 5 1 3.8222 0.5977 -0.6394 6 6 4.0298 1.5182 1.2747 7 8 3.3136 1.4653 2.2521 8 7 5.3649 1.6275 1.4227 9 6 5.9511 1.6830 2.7642 10 1 5.4190 1.0226 3.4490 11 6 7.4639 1.3409 2.7246 12 6 8.0182 2.0807 3.9604 13 7 7.0697 3.1592 4.2871 14 6 7.1839 4.0370 5.3319 15 1 6.4772 4.8469 5.4365 16 6 8.2083 3.8859 6.2565 17 7 9.1560 2.9963 6.0492 18 14 8.2416 4.9450 7.7949 19 1 7.6002 4.2110 8.9151 20 1 9.6492 5.2581 8.1498 21 1 7.5021 6.2078 7.5426 22 6 5.9748 3.1362 3.3000 23 6 3.7805 2.7393 -0.8692 24 6 2.6281 3.6566 -1.2832 25 6 3.3596 2.8237 -2.3377 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 5.9377 1.6701 0.6411 32 1 7.6188 0.2658 2.8172 33 1 7.9214 1.7201 1.8108 34 1 8.0980 1.3909 4.8005 35 1 8.9973 2.5018 3.7322 36 1 9.8716 2.8905 6.6955 37 1 6.1797 3.8360 2.4898 38 1 5.0266 3.3792 3.7795 39 1 4.7225 3.2097 -0.5877 40 1 1.6181 3.3498 -1.0118 41 1 2.8119 4.7310 -1.2741 42 1 4.0247 3.3500 -3.0224 43 1 2.8308 1.9690 -2.7596 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714996471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:02 Heat of formation + Delta-G solvation = -53.106070 kcal Electronic energy + Delta-G solvation = -22740.476436 eV Core-core repulsion = 19400.506374 eV Total energy + Delta-G solvation = -3339.970062 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33439 -39.54759 -38.44703 -37.23781 -35.59736 -33.81058 -32.27115 -31.12559 -29.66668 -28.12709 -26.31392 -23.89400 -23.14302 -22.72828 -22.09643 -21.90615 -21.05429 -19.17355 -18.53280 -17.95171 -17.10721 -16.84360 -16.68313 -16.08239 -16.06779 -15.81478 -15.20378 -14.97423 -14.54998 -14.19955 -14.00010 -13.87172 -13.69591 -13.37997 -12.98500 -12.87791 -12.81172 -12.45482 -12.35914 -12.28041 -12.16681 -12.13667 -12.04042 -11.85198 -11.63704 -11.59436 -11.22870 -11.04848 -10.72483 -10.23283 -10.11157 -8.94497 -7.90893 -5.25241 1.43273 1.46251 1.51495 1.54959 1.98573 2.46853 2.65248 2.97206 3.28146 3.53678 3.64495 3.74241 3.89218 3.94019 4.04410 4.15411 4.17110 4.19349 4.26199 4.32157 4.47864 4.53267 4.56543 4.71921 4.81338 4.85484 4.88489 4.95734 5.02581 5.04943 5.06431 5.25280 5.26361 5.38872 5.39268 5.51021 5.61492 5.70665 6.07648 6.15738 6.58744 7.06118 7.25397 7.71219 8.35602 9.19992 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025842 B = 0.003540 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.226639 B = 7908.290962 C = 8030.626072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.047 3.953 3 O -0.372 6.372 4 C 0.114 3.886 5 H 0.123 0.877 6 C 0.488 3.512 7 O -0.577 6.577 8 N -0.697 5.697 9 C 0.147 3.853 10 H 0.069 0.931 11 C -0.125 4.125 12 C 0.182 3.818 13 N -0.626 5.626 14 C -0.251 4.251 15 H 0.075 0.925 16 C -0.059 4.059 17 N -0.945 5.945 18 Si 0.977 3.023 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.270 1.270 22 C 0.130 3.870 23 C -0.174 4.174 24 C -0.176 4.176 25 C -0.141 4.141 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.033 0.967 31 H 0.418 0.582 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.014 0.986 35 H 0.018 0.982 36 H 0.250 0.750 37 H 0.030 0.970 38 H 0.018 0.982 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.945 -6.663 -21.186 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.029 4.029 3 O -0.290 6.290 4 C 0.053 3.947 5 H 0.140 0.860 6 C 0.275 3.725 7 O -0.455 6.455 8 N -0.352 5.352 9 C 0.040 3.960 10 H 0.087 0.913 11 C -0.164 4.164 12 C 0.057 3.943 13 N -0.354 5.354 14 C -0.380 4.380 15 H 0.093 0.907 16 C -0.253 4.253 17 N -0.593 5.593 18 Si 0.805 3.195 19 H -0.215 1.215 20 H -0.214 1.214 21 H -0.195 1.195 22 C 0.003 3.997 23 C -0.193 4.193 24 C -0.213 4.213 25 C -0.177 4.177 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.256 0.744 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.134 0.866 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.474 -6.512 -20.330 24.235 hybrid contribution 0.631 0.481 1.311 1.532 sum -10.843 -6.031 -19.019 22.708 Atomic orbital electron populations 1.21724 0.92637 1.03382 1.02574 1.22777 0.96745 0.82801 1.00529 1.87988 1.18986 1.27972 1.94053 1.21465 0.82742 1.00579 0.89941 0.86000 1.22034 0.82360 0.75094 0.92975 1.90709 1.61523 1.50621 1.42658 1.45800 1.06979 1.73909 1.08473 1.21762 0.94261 0.95864 0.84097 0.91283 1.22986 0.92512 1.01462 0.99411 1.21011 0.91619 0.88604 0.93081 1.44740 1.23674 1.36188 1.30750 1.19401 1.10880 1.06353 1.01320 0.90710 1.25639 0.97030 1.00926 1.01672 1.70158 1.13744 1.38868 1.36546 0.85082 0.76771 0.78203 0.79417 1.21468 1.21450 1.19482 1.21895 0.90271 0.95759 0.91750 1.22352 1.01008 0.97173 0.98760 1.22889 0.97195 0.97429 1.03763 1.23049 1.02527 1.02585 0.89565 0.91094 0.89075 0.93610 0.90494 0.94851 0.74403 0.88963 0.88661 0.96733 0.96398 0.94100 0.95206 0.96355 0.85856 0.88888 0.88568 0.86612 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.05 0.91 6.52 71.98 0.47 1.38 16 3 O -0.37 -8.98 7.88 -129.94 -1.02 -10.01 16 4 C 0.11 2.38 2.88 29.85 0.09 2.47 16 5 H 0.12 1.70 7.69 -2.38 -0.02 1.68 16 6 C 0.49 14.56 7.20 87.66 0.63 15.19 16 7 O -0.58 -23.63 16.25 16.00 0.26 -23.37 16 8 N -0.70 -18.62 4.98 -435.96 -2.17 -20.79 16 9 C 0.15 5.30 3.32 46.38 0.15 5.46 16 10 H 0.07 2.87 7.73 -2.39 -0.02 2.85 16 11 C -0.13 -4.24 6.58 31.78 0.21 -4.03 16 12 C 0.18 8.93 5.39 86.68 0.47 9.40 16 13 N -0.63 -33.79 3.40 -691.31 -2.35 -36.15 16 14 C -0.25 -14.81 10.27 84.03 0.86 -13.95 16 15 H 0.08 4.33 7.84 -2.91 -0.02 4.30 16 16 C -0.06 -3.46 5.48 84.86 0.46 -2.99 16 17 N -0.94 -57.30 10.39 21.65 0.22 -57.07 16 18 Si 0.98 47.07 29.56 68.60 2.03 49.09 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 22 C 0.13 5.84 6.92 86.85 0.60 6.44 16 23 C -0.17 -3.08 5.62 -10.79 -0.06 -3.14 16 24 C -0.18 -3.22 9.87 30.59 0.30 -2.92 16 25 C -0.14 -1.76 10.24 30.59 0.31 -1.44 16 26 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.08 0.99 7.98 -2.39 -0.02 0.97 16 30 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.42 7.67 8.18 -92.71 -0.76 6.92 16 32 H 0.09 2.70 8.14 -2.38 -0.02 2.68 16 33 H 0.09 2.64 8.00 -2.39 -0.02 2.62 16 34 H 0.01 0.80 7.32 -2.39 -0.02 0.78 16 35 H 0.02 0.96 7.61 -2.39 -0.02 0.94 16 36 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.12 2.09 7.63 -2.39 -0.02 2.07 16 40 H 0.09 1.99 7.02 -2.39 -0.02 1.98 16 41 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.95 351.07 2.43 -74.52 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: 0.23 Total: 13.56 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.24 Total: 10.21 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -4.30 Total: -114.01 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.76 Total: -33.38 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.09 kcal Total: -76.95 2.43 -74.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714996471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.409 kcal (2) G-P(sol) polarization free energy of solvation -76.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds